Wall clock time and date at job start Tue Mar 31 2020 10:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47969 * 2 1 4 4 C 1.53088 * 109.48344 * 239.96523 * 2 1 3 5 5 C 1.53169 * 109.16679 * 182.40650 * 4 2 1 6 6 H 1.09001 * 109.61810 * 176.88938 * 5 4 2 7 7 C 1.50699 * 109.54653 * 297.11125 * 5 4 2 8 8 O 1.21279 * 119.99810 * 359.55765 * 7 5 4 9 9 N 1.34774 * 120.00385 * 179.55363 * 7 5 4 10 10 C 1.46498 * 120.00394 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47518 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49579 * 54.93301 * 11 10 9 13 13 C 1.53035 * 109.49623 * 175.00171 * 11 10 9 14 14 C 1.53048 * 109.53493 * 181.31934 * 13 11 10 15 15 C 1.53195 * 109.31089 * 298.63473 * 14 13 11 16 16 N 1.46920 * 108.77874 * 54.63298 * 15 14 13 17 17 C 1.36936 * 120.63054 * 126.36723 * 16 15 14 18 18 H 1.07998 * 120.00244 * 332.51082 * 17 16 15 19 19 C 1.38814 * 120.00017 * 152.50689 * 17 16 15 20 20 N 1.31618 * 119.99798 * 335.02747 * 19 17 16 21 21 Si 1.86804 * 119.99785 * 155.02721 * 19 17 16 22 22 H 1.48497 * 109.47193 * 90.00159 * 21 19 17 23 23 H 1.48503 * 109.47075 * 329.99960 * 21 19 17 24 24 H 1.48503 * 109.46931 * 209.99997 * 21 19 17 25 25 C 1.46929 * 118.73789 * 306.64787 * 16 15 14 26 26 C 1.53180 * 109.03434 * 56.98025 * 5 4 2 27 27 C 1.53084 * 109.16144 * 303.01626 * 26 5 4 28 28 O 1.42899 * 109.48214 * 120.02171 * 2 1 3 29 29 H 1.08997 * 109.47157 * 299.97787 * 1 2 3 30 30 H 1.08996 * 109.47055 * 59.97761 * 1 2 3 31 31 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.52242 * 62.49743 * 4 2 1 33 33 H 1.09004 * 109.52286 * 302.31643 * 4 2 1 34 34 H 0.96997 * 120.00036 * 0.02562 * 9 7 5 35 35 H 1.09002 * 109.46930 * 60.00042 * 10 9 7 36 36 H 1.09006 * 109.46958 * 300.00453 * 10 9 7 37 37 H 1.08998 * 109.46672 * 61.29849 * 13 11 10 38 38 H 1.08999 * 109.44905 * 301.32617 * 13 11 10 39 39 H 1.08999 * 109.49471 * 178.68673 * 14 13 11 40 40 H 1.08995 * 109.49947 * 58.58459 * 14 13 11 41 41 H 1.09011 * 109.58316 * 294.84413 * 15 14 13 42 42 H 1.08995 * 109.58664 * 174.42710 * 15 14 13 43 43 H 0.96992 * 120.00199 * 354.25811 * 20 19 17 44 44 H 1.09005 * 109.58534 * 173.14297 * 25 16 15 45 45 H 1.08999 * 109.58601 * 293.56296 * 25 16 15 46 46 H 1.09004 * 109.52210 * 62.92981 * 26 5 4 47 47 H 1.09007 * 109.52308 * 183.11087 * 26 5 4 48 48 H 1.09008 * 109.47993 * 177.59193 * 27 26 5 49 49 H 1.08995 * 109.48799 * 297.61640 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5710 -0.7709 -1.2121 6 1 3.9405 -1.3320 -2.0705 7 6 4.1211 0.6315 -1.2519 8 8 3.3651 1.5779 -1.3131 9 7 5.4531 0.8342 -1.2195 10 6 5.9879 2.1975 -1.2576 11 6 7.5163 2.1475 -1.2098 12 1 7.8849 1.5127 -2.0155 13 6 8.0790 3.5610 -1.3750 14 6 9.6085 3.5080 -1.3602 15 6 10.0831 2.9528 -0.0135 16 7 9.4321 1.6566 0.2196 17 6 10.1764 0.5436 0.5064 18 1 11.1923 0.4662 0.1481 19 6 9.6253 -0.4853 1.2579 20 7 8.6368 -0.2357 2.0903 21 14 10.2866 -2.2240 1.0875 22 1 11.3856 -2.4335 2.0640 23 1 10.8036 -2.4243 -0.2901 24 1 9.1963 -3.1966 1.3533 25 6 7.9676 1.5759 0.1330 26 6 4.0176 -1.4600 0.0811 27 6 3.4307 -0.7090 1.2791 28 8 2.0066 -0.6740 1.1664 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7148 -0.1845 -2.1399 33 1 1.6443 -1.7376 -1.2707 34 1 6.0578 0.0773 -1.1709 35 1 5.6153 2.7580 -0.4002 36 1 5.6693 2.6871 -2.1780 37 1 7.7295 4.1892 -0.5556 38 1 7.7393 3.9784 -2.3229 39 1 10.0086 4.5120 -1.5012 40 1 9.9578 2.8602 -2.1642 41 1 9.8129 3.6461 0.7831 42 1 11.1648 2.8202 -0.0338 43 1 8.3488 0.6781 2.2411 44 1 7.6538 0.5347 0.2094 45 1 7.5213 2.1543 0.9419 46 1 3.6613 -2.4902 0.0867 47 1 5.1059 -1.4497 0.1423 48 1 3.7100 -1.2199 2.2006 49 1 3.8194 0.3091 1.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345322708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:05 Heat of formation + Delta-G solvation = -106.963134 kcal Electronic energy + Delta-G solvation = -27726.963542 eV Core-core repulsion = 24073.582824 eV Total energy + Delta-G solvation = -3653.380717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75106 -39.94597 -39.09164 -36.31755 -35.13396 -34.70454 -33.70231 -32.42518 -31.44513 -28.87866 -27.54595 -26.94772 -25.28926 -23.93869 -23.65097 -22.76280 -22.20844 -21.04259 -20.28145 -19.36785 -17.76071 -17.33828 -17.26800 -16.97016 -16.64769 -16.23100 -16.00715 -15.65559 -15.42010 -15.20034 -15.05636 -14.89375 -14.66423 -14.19909 -13.99422 -13.70916 -13.55408 -13.37154 -13.29809 -13.25846 -12.94108 -12.82403 -12.66417 -12.43776 -12.07784 -11.98678 -11.88234 -11.76210 -11.74037 -11.70110 -11.55899 -11.40526 -11.12199 -10.80986 -10.45262 -10.28121 -10.08676 -8.91848 -8.22631 -5.38124 1.55882 1.61329 1.66681 1.85430 2.18684 2.66040 2.81071 3.20196 3.47910 3.54412 3.65855 3.76417 3.86122 3.93917 3.94685 3.98524 4.09053 4.21977 4.23090 4.39782 4.42180 4.49801 4.52603 4.64435 4.65389 4.68407 4.74668 4.75973 4.79715 4.82519 4.85806 4.95122 5.02480 5.03713 5.04070 5.09727 5.17645 5.22873 5.24510 5.25771 5.29653 5.43884 5.54048 5.85914 6.26398 6.39423 6.46851 7.06550 7.16074 7.79293 8.23668 9.00305 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.004542 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.071322 B = 6163.832449 C = 7607.660115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.120 4.120 5 C -0.109 4.109 6 H 0.129 0.871 7 C 0.513 3.487 8 O -0.574 6.574 9 N -0.720 5.720 10 C 0.138 3.862 11 C -0.106 4.106 12 H 0.072 0.928 13 C -0.099 4.099 14 C -0.121 4.121 15 C 0.137 3.863 16 N -0.618 5.618 17 C -0.359 4.359 18 H 0.047 0.953 19 C -0.067 4.067 20 N -0.933 5.933 21 Si 1.111 2.889 22 H -0.290 1.290 23 H -0.276 1.276 24 H -0.283 1.283 25 C 0.171 3.829 26 C -0.141 4.141 27 C 0.060 3.940 28 O -0.394 6.394 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.407 0.593 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.010 0.990 42 H 0.047 0.953 43 H 0.251 0.749 44 H 0.056 0.944 45 H -0.010 1.010 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -0.528 -9.659 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.158 4.158 5 C -0.130 4.130 6 H 0.147 0.853 7 C 0.300 3.700 8 O -0.454 6.454 9 N -0.371 5.371 10 C 0.013 3.987 11 C -0.126 4.126 12 H 0.091 0.909 13 C -0.137 4.137 14 C -0.160 4.160 15 C 0.012 3.988 16 N -0.343 5.343 17 C -0.489 4.489 18 H 0.064 0.936 19 C -0.264 4.264 20 N -0.575 5.575 21 Si 0.935 3.065 22 H -0.217 1.217 23 H -0.202 1.202 24 H -0.209 1.209 25 C 0.045 3.955 26 C -0.179 4.179 27 C -0.017 4.017 28 O -0.313 6.313 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.243 0.757 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.008 0.992 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.119 0.881 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.484 -1.490 -9.085 14.719 hybrid contribution 1.178 1.726 0.021 2.089 sum -10.307 0.235 -9.064 13.727 Atomic orbital electron populations 1.21726 0.91596 1.03274 1.02773 1.22447 0.96282 0.95571 0.84816 0.92961 1.21975 0.92363 1.02622 0.98842 1.21513 0.97924 0.92248 1.01355 0.85311 1.21097 0.81900 0.92227 0.74730 1.90608 1.58156 1.45281 1.51405 1.46129 1.07187 1.09695 1.74057 1.21250 0.92745 0.83306 1.01350 1.21730 0.92919 0.98846 0.99137 0.90918 1.21364 0.95518 0.94635 1.02179 1.21860 0.95794 1.00992 0.97352 1.21104 0.96096 0.86472 0.95168 1.44360 1.02107 1.05290 1.82501 1.20215 0.99279 0.98409 1.30973 0.93566 1.27060 0.99242 1.07425 0.92716 1.70887 1.32135 1.22187 1.32266 0.82926 0.75271 0.71982 0.76282 1.21701 1.20170 1.20889 1.20685 0.83404 0.98694 0.92720 1.22152 1.01630 1.01246 0.92873 1.22514 0.80960 0.98610 0.99594 1.87866 1.20905 1.78192 1.44381 0.92533 0.89818 0.90989 0.89942 0.88480 0.75737 0.93462 0.90585 0.92683 0.89844 0.89773 0.92502 0.97246 0.93415 0.93904 0.92531 0.99225 0.87757 0.90493 0.88066 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.56 71.98 0.69 -2.13 16 2 C 0.07 1.76 2.97 30.62 0.09 1.85 16 3 H 0.05 1.72 5.82 -2.39 -0.01 1.70 16 4 C -0.12 -2.63 4.56 30.68 0.14 -2.49 16 5 C -0.11 -2.54 3.04 -11.42 -0.03 -2.58 16 6 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 7 C 0.51 15.30 5.82 87.66 0.51 15.81 16 8 O -0.57 -20.31 13.85 -3.03 -0.04 -20.35 16 9 N -0.72 -21.57 5.21 -463.07 -2.41 -23.99 16 10 C 0.14 4.28 5.07 86.38 0.44 4.71 16 11 C -0.11 -3.56 2.36 -10.86 -0.03 -3.59 16 12 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 13 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 14 C -0.12 -3.79 6.08 30.68 0.19 -3.60 16 15 C 0.14 5.59 6.52 86.36 0.56 6.15 16 16 N -0.62 -29.98 2.86 -699.92 -2.00 -31.98 16 17 C -0.36 -19.45 9.49 84.03 0.80 -18.65 16 18 H 0.05 2.54 7.94 -2.91 -0.02 2.51 16 19 C -0.07 -3.65 4.69 84.86 0.40 -3.25 16 20 N -0.93 -53.95 12.41 21.65 0.27 -53.68 16 21 Si 1.11 48.26 29.99 68.60 2.06 50.32 16 22 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.17 7.53 3.75 86.22 0.32 7.86 16 26 C -0.14 -3.48 5.56 30.68 0.17 -3.31 16 27 C 0.06 1.78 6.62 72.01 0.48 2.26 16 28 O -0.39 -11.75 10.41 -148.98 -1.55 -13.30 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.75 8.02 -2.38 -0.02 1.73 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 11.95 7.08 -92.71 -0.66 11.29 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 43 H 0.25 15.13 6.71 -92.71 -0.62 14.50 16 44 H 0.06 2.73 5.50 -2.38 -0.01 2.71 16 45 H -0.01 -0.49 7.87 -2.39 -0.02 -0.51 16 46 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 47 H 0.08 2.05 7.50 -2.38 -0.02 2.04 16 48 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 49 H 0.02 0.77 7.38 -2.39 -0.02 0.75 16 Total: -1.00 -66.19 371.18 1.61 -64.58 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.41 Total: 32.13 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 4.88 Total: -3.73 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.14 Total: -109.64 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.59 Total: -33.65 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.06 Total: 50.32 kcal Total: -66.19 1.61 -64.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345322708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.386 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds