Wall clock time and date at job start Tue Mar 31 2020 09:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47092 * 2 1 4 4 C 1.50703 * 109.46917 * 119.99479 * 2 1 3 5 5 O 1.21280 * 120.00128 * 119.99804 * 4 2 1 6 6 N 1.34777 * 119.99909 * 300.27977 * 4 2 1 7 7 C 1.46505 * 119.99816 * 179.72357 * 6 4 2 8 8 C 1.53006 * 109.47052 * 274.99823 * 7 6 4 9 9 C 1.52994 * 109.46992 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47177 * 60.00145 * 9 8 7 11 11 C 1.52996 * 109.47133 * 299.99821 * 10 9 8 12 12 C 1.52997 * 109.47203 * 154.99916 * 7 6 4 13 13 N 1.46896 * 109.47341 * 239.99767 * 2 1 3 14 14 C 1.47444 * 110.99968 * 55.27709 * 13 2 1 15 15 C 1.54319 * 107.23014 * 123.25913 * 14 13 2 16 16 C 1.55141 * 103.02258 * 22.28177 * 15 14 13 17 17 O 1.42902 * 110.99004 * 82.43449 * 16 15 14 18 18 C 1.50697 * 110.98971 * 206.21658 * 16 15 14 19 19 H 1.07999 * 119.99949 * 27.82906 * 18 16 15 20 20 C 1.37877 * 119.99517 * 207.82531 * 18 16 15 21 21 N 1.31524 * 119.99670 * 171.71574 * 20 18 16 22 22 Si 1.86794 * 120.00566 * 351.71724 * 20 18 16 23 23 H 1.48502 * 109.47221 * 84.91705 * 22 20 18 24 24 H 1.48499 * 109.47549 * 204.92111 * 22 20 18 25 25 H 1.48501 * 109.46965 * 324.92039 * 22 20 18 26 26 C 1.47844 * 110.99790 * 176.11975 * 13 2 1 27 27 H 1.09000 * 109.46758 * 53.74892 * 1 2 3 28 28 H 1.08997 * 109.47156 * 173.74717 * 1 2 3 29 29 H 1.08993 * 109.47356 * 293.75136 * 1 2 3 30 30 H 0.97002 * 120.00431 * 359.71946 * 6 4 2 31 31 H 1.08999 * 109.47085 * 34.99893 * 7 6 4 32 32 H 1.08995 * 109.46771 * 300.00101 * 8 7 6 33 33 H 1.09003 * 109.46813 * 60.00009 * 8 7 6 34 34 H 1.08995 * 109.47500 * 299.99722 * 9 8 7 35 35 H 1.09003 * 109.47130 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47376 * 179.97438 * 10 9 8 37 37 H 1.09008 * 109.47336 * 59.99736 * 10 9 8 38 38 H 1.08999 * 109.47189 * 300.00044 * 11 10 9 39 39 H 1.09004 * 109.47428 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.46927 * 300.00212 * 12 7 6 41 41 H 1.08999 * 109.47119 * 59.99997 * 12 7 6 42 42 H 1.09002 * 109.88323 * 242.66294 * 14 13 2 43 43 H 1.08991 * 109.88946 * 3.68924 * 14 13 2 44 44 H 1.09000 * 110.70457 * 140.66765 * 15 14 13 45 45 H 1.08999 * 110.70482 * 263.72200 * 15 14 13 46 46 H 0.96708 * 113.99463 * 64.67026 * 17 16 15 47 47 H 0.96998 * 119.99594 * 179.97438 * 21 20 18 48 48 H 1.08999 * 110.37692 * 332.46805 * 26 13 2 49 49 H 1.09004 * 110.37564 * 94.80568 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7020 -0.2530 2.4546 7 6 2.1854 -0.9471 3.6508 8 6 1.2394 -2.1015 3.9878 9 6 1.7445 -2.8268 5.2367 10 6 1.7922 -1.8472 6.4110 11 6 2.7381 -0.6928 6.0741 12 6 2.2326 0.0328 4.8249 13 7 2.0197 -0.6925 -1.1994 14 6 1.4567 -0.0925 -2.4229 15 6 2.6443 0.3359 -3.3102 16 6 3.8042 -0.5575 -2.7970 17 8 3.7537 -1.8549 -3.3940 18 6 5.1393 0.0961 -3.0449 19 1 5.2136 1.1726 -3.0887 20 6 6.2658 -0.6804 -3.2156 21 7 7.3967 -0.1245 -3.5922 22 14 6.1859 -2.5218 -2.9122 23 1 5.7007 -3.2049 -4.1382 24 1 7.5394 -3.0259 -2.5673 25 1 5.2538 -2.7984 -1.7896 26 6 3.4947 -0.6318 -1.2810 27 1 -0.3633 0.6077 -0.8288 28 1 -0.3633 -1.0215 -0.1119 29 1 -0.3634 0.4139 0.9405 30 1 1.1444 0.5357 2.5436 31 1 3.1852 -1.3392 3.4644 32 1 0.2397 -1.7094 4.1742 33 1 1.2058 -2.7996 3.1513 34 1 2.7441 -3.2190 5.0498 35 1 1.0704 -3.6489 5.4770 36 1 2.1517 -2.3640 7.3009 37 1 0.7925 -1.4550 6.5979 38 1 3.7378 -1.0850 5.8872 39 1 2.7718 0.0053 6.9105 40 1 2.9065 0.8552 4.5848 41 1 1.2328 0.4248 5.0114 42 1 0.8466 -0.8268 -2.9489 43 1 0.8510 0.7761 -2.1650 44 1 2.4349 0.1303 -4.3600 45 1 2.8736 1.3914 -3.1640 46 1 3.8946 -1.8534 -4.3507 47 1 8.1893 -0.6707 -3.7120 48 1 3.8666 0.2583 -0.7737 49 1 3.9360 -1.5291 -0.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:01 Heat of formation + Delta-G solvation = -93.015293 kcal Electronic energy + Delta-G solvation = -27438.066456 eV Core-core repulsion = 23785.290562 eV Total energy + Delta-G solvation = -3652.775893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.21203 -38.82997 -37.68857 -35.37248 -34.15907 -32.26676 -32.07616 -30.98529 -29.42826 -28.65832 -27.91484 -24.32852 -24.24829 -22.88530 -22.30445 -20.55756 -20.23351 -19.63763 -19.30043 -17.48781 -16.86808 -16.55022 -15.47793 -15.18012 -15.14001 -14.97496 -14.59364 -14.34385 -14.19566 -14.07690 -13.49059 -13.30023 -13.01377 -12.73252 -12.55506 -12.47667 -12.40673 -12.21066 -11.90561 -11.72901 -11.65047 -11.41926 -11.38370 -11.22566 -10.98295 -10.89649 -10.65289 -10.48025 -10.43569 -10.35160 -10.09071 -9.98399 -9.35023 -9.13489 -8.94401 -8.46234 -8.30696 -7.65829 -6.11115 -4.20861 2.92240 3.16076 3.56456 3.66098 3.89504 4.43981 4.46840 4.52882 4.62452 4.66803 4.87821 4.93952 5.02254 5.09558 5.18267 5.21377 5.26629 5.28500 5.30963 5.39068 5.40246 5.42615 5.53147 5.60662 5.63771 5.77951 5.82672 5.87647 5.88340 5.92952 5.99892 6.00677 6.13867 6.15334 6.21804 6.27745 6.41532 6.56935 6.62010 6.76901 6.99523 7.28456 7.43396 7.48705 7.71642 7.74712 8.22035 8.51209 8.78632 8.93053 9.52369 10.97875 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.003848 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.621150 B = 7274.096696 C = 8129.395552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 H 0.062 0.938 4 C 0.518 3.482 5 O -0.508 6.508 6 N -0.735 5.735 7 C 0.146 3.854 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.116 4.116 12 C -0.125 4.125 13 N -0.509 5.509 14 C 0.047 3.953 15 C -0.159 4.159 16 C 0.220 3.780 17 O -0.551 6.551 18 C -0.554 4.554 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.948 3.052 23 H -0.294 1.294 24 H -0.329 1.329 25 H -0.265 1.265 26 C 0.063 3.937 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.395 0.605 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.367 0.633 47 H 0.265 0.735 48 H 0.046 0.954 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.932 1.573 16.526 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.055 4.055 3 H 0.079 0.921 4 C 0.303 3.697 5 O -0.380 6.380 6 N -0.389 5.389 7 C 0.042 3.958 8 C -0.167 4.167 9 C -0.156 4.156 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.163 4.163 13 N -0.234 5.234 14 C -0.081 4.081 15 C -0.198 4.198 16 C 0.180 3.820 17 O -0.358 6.358 18 C -0.591 4.591 19 H 0.095 0.905 20 C -0.133 4.133 21 N -0.527 5.527 22 Si 0.783 3.217 23 H -0.222 1.222 24 H -0.261 1.261 25 H -0.191 1.191 26 C -0.064 4.064 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.214 0.786 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.505 0.151 17.043 23.041 hybrid contribution 0.152 0.681 -0.450 0.830 sum -15.352 0.832 16.593 22.621 Atomic orbital electron populations 1.21866 0.92760 1.03416 1.01817 1.21751 0.96503 0.96105 0.91112 0.92091 1.20604 0.80056 0.84881 0.84129 1.90735 1.35875 1.25237 1.86200 1.46084 1.55045 1.32307 1.05451 1.20916 0.98927 0.92265 0.83717 1.21910 0.98836 0.97783 0.98142 1.21501 1.01821 0.97833 0.94446 1.21567 0.99720 0.96513 0.97990 1.21491 0.99574 0.97429 0.96945 1.21809 1.01886 0.98131 0.94523 1.63566 1.09296 1.51176 0.99364 1.22806 0.97223 0.96994 0.91030 1.23372 0.96466 1.00798 0.99144 1.20203 0.93151 0.79606 0.89049 1.86188 1.92984 1.31548 1.25088 1.21241 0.90481 0.95164 1.52238 0.90522 1.25167 0.94859 1.00727 0.92580 1.69983 1.01183 1.37254 1.44245 0.85688 0.73378 0.82786 0.79812 1.22178 1.26056 1.19053 1.23365 0.84066 1.01327 0.97593 0.91403 0.91199 0.92336 0.77140 0.89487 0.92067 0.91261 0.91652 0.91873 0.91987 0.92051 0.91558 0.91651 0.91290 0.91570 0.91162 0.93654 0.91625 0.91519 0.78558 0.92531 0.93553 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.80 37.16 0.33 -1.28 16 2 C 0.06 0.88 2.16 -68.86 -0.15 0.73 16 3 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 4 C 0.52 8.40 6.88 -10.98 -0.08 8.32 16 5 O -0.51 -10.72 14.29 5.56 0.08 -10.64 16 6 N -0.74 -8.61 4.93 -53.80 -0.26 -8.87 16 7 C 0.15 1.63 2.45 -67.93 -0.17 1.46 16 8 C -0.13 -1.34 5.49 -26.73 -0.15 -1.49 16 9 C -0.12 -1.06 5.92 -26.74 -0.16 -1.21 16 10 C -0.12 -0.89 5.92 -26.73 -0.16 -1.04 16 11 C -0.12 -0.88 5.92 -26.71 -0.16 -1.04 16 12 C -0.13 -1.03 5.39 -26.71 -0.14 -1.18 16 13 N -0.51 -9.84 4.79 -224.68 -1.08 -10.91 16 14 C 0.05 0.81 6.20 -2.84 -0.02 0.79 16 15 C -0.16 -3.13 6.13 -24.91 -0.15 -3.28 16 16 C 0.22 5.26 0.71 -89.63 -0.06 5.20 16 17 O -0.55 -13.20 8.77 -35.23 -0.31 -13.51 16 18 C -0.55 -15.50 8.86 -34.44 -0.31 -15.81 16 19 H 0.08 2.30 8.01 -52.49 -0.42 1.88 16 20 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 21 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 22 Si 0.95 25.25 24.61 -169.99 -4.18 21.06 16 23 H -0.29 -7.50 7.00 56.52 0.40 -7.11 16 24 H -0.33 -8.92 7.11 56.52 0.40 -8.51 16 25 H -0.26 -7.37 5.74 56.52 0.32 -7.05 16 26 C 0.06 1.47 4.56 -2.30 -0.01 1.46 16 27 H 0.07 0.71 6.45 -51.93 -0.33 0.37 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.50 7.38 -51.93 -0.38 0.11 16 30 H 0.39 3.40 7.94 -40.82 -0.32 3.07 16 31 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.65 6.02 -51.93 -0.31 0.34 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 46 H 0.37 7.84 8.46 45.56 0.39 8.23 16 47 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.05 1.09 7.60 -51.93 -0.39 0.69 16 49 H 0.09 2.42 5.82 -51.93 -0.30 2.11 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -34.45 367.48 -8.94 -43.40 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.03 Total: 6.98 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.48 Total: -6.38 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.57 Total: -46.45 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.23 Total: -24.15 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.18 Total: 21.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.45 -8.94 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.617 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds