Wall clock time and date at job start Tue Mar 31 2020 09:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47092 * 2 1 4 4 C 1.50703 * 109.46917 * 119.99479 * 2 1 3 5 5 O 1.21280 * 120.00128 * 119.99804 * 4 2 1 6 6 N 1.34777 * 119.99909 * 300.27977 * 4 2 1 7 7 C 1.46505 * 119.99816 * 179.72357 * 6 4 2 8 8 C 1.53006 * 109.47052 * 274.99823 * 7 6 4 9 9 C 1.52994 * 109.46992 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47177 * 60.00145 * 9 8 7 11 11 C 1.52996 * 109.47133 * 299.99821 * 10 9 8 12 12 C 1.52997 * 109.47203 * 154.99916 * 7 6 4 13 13 N 1.46896 * 109.47341 * 239.99767 * 2 1 3 14 14 C 1.47444 * 110.99968 * 55.27709 * 13 2 1 15 15 C 1.54319 * 107.23014 * 123.25913 * 14 13 2 16 16 C 1.55141 * 103.02258 * 22.28177 * 15 14 13 17 17 O 1.42902 * 110.99004 * 82.43449 * 16 15 14 18 18 C 1.50697 * 110.98971 * 206.21658 * 16 15 14 19 19 H 1.07999 * 119.99949 * 27.82906 * 18 16 15 20 20 C 1.37877 * 119.99517 * 207.82531 * 18 16 15 21 21 N 1.31524 * 119.99670 * 171.71574 * 20 18 16 22 22 Si 1.86794 * 120.00566 * 351.71724 * 20 18 16 23 23 H 1.48502 * 109.47221 * 84.91705 * 22 20 18 24 24 H 1.48499 * 109.47549 * 204.92111 * 22 20 18 25 25 H 1.48501 * 109.46965 * 324.92039 * 22 20 18 26 26 C 1.47844 * 110.99790 * 176.11975 * 13 2 1 27 27 H 1.09000 * 109.46758 * 53.74892 * 1 2 3 28 28 H 1.08997 * 109.47156 * 173.74717 * 1 2 3 29 29 H 1.08993 * 109.47356 * 293.75136 * 1 2 3 30 30 H 0.97002 * 120.00431 * 359.71946 * 6 4 2 31 31 H 1.08999 * 109.47085 * 34.99893 * 7 6 4 32 32 H 1.08995 * 109.46771 * 300.00101 * 8 7 6 33 33 H 1.09003 * 109.46813 * 60.00009 * 8 7 6 34 34 H 1.08995 * 109.47500 * 299.99722 * 9 8 7 35 35 H 1.09003 * 109.47130 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.47376 * 179.97438 * 10 9 8 37 37 H 1.09008 * 109.47336 * 59.99736 * 10 9 8 38 38 H 1.08999 * 109.47189 * 300.00044 * 11 10 9 39 39 H 1.09004 * 109.47428 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.46927 * 300.00212 * 12 7 6 41 41 H 1.08999 * 109.47119 * 59.99997 * 12 7 6 42 42 H 1.09002 * 109.88323 * 242.66294 * 14 13 2 43 43 H 1.08991 * 109.88946 * 3.68924 * 14 13 2 44 44 H 1.09000 * 110.70457 * 140.66765 * 15 14 13 45 45 H 1.08999 * 110.70482 * 263.72200 * 15 14 13 46 46 H 0.96708 * 113.99463 * 64.67026 * 17 16 15 47 47 H 0.96998 * 119.99594 * 179.97438 * 21 20 18 48 48 H 1.08999 * 110.37692 * 332.46805 * 26 13 2 49 49 H 1.09004 * 110.37564 * 94.80568 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7020 -0.2530 2.4546 7 6 2.1854 -0.9471 3.6508 8 6 1.2394 -2.1015 3.9878 9 6 1.7445 -2.8268 5.2367 10 6 1.7922 -1.8472 6.4110 11 6 2.7381 -0.6928 6.0741 12 6 2.2326 0.0328 4.8249 13 7 2.0197 -0.6925 -1.1994 14 6 1.4567 -0.0925 -2.4229 15 6 2.6443 0.3359 -3.3102 16 6 3.8042 -0.5575 -2.7970 17 8 3.7537 -1.8549 -3.3940 18 6 5.1393 0.0961 -3.0449 19 1 5.2136 1.1726 -3.0887 20 6 6.2658 -0.6804 -3.2156 21 7 7.3967 -0.1245 -3.5922 22 14 6.1859 -2.5218 -2.9122 23 1 5.7007 -3.2049 -4.1382 24 1 7.5394 -3.0259 -2.5673 25 1 5.2538 -2.7984 -1.7896 26 6 3.4947 -0.6318 -1.2810 27 1 -0.3633 0.6077 -0.8288 28 1 -0.3633 -1.0215 -0.1119 29 1 -0.3634 0.4139 0.9405 30 1 1.1444 0.5357 2.5436 31 1 3.1852 -1.3392 3.4644 32 1 0.2397 -1.7094 4.1742 33 1 1.2058 -2.7996 3.1513 34 1 2.7441 -3.2190 5.0498 35 1 1.0704 -3.6489 5.4770 36 1 2.1517 -2.3640 7.3009 37 1 0.7925 -1.4550 6.5979 38 1 3.7378 -1.0850 5.8872 39 1 2.7718 0.0053 6.9105 40 1 2.9065 0.8552 4.5848 41 1 1.2328 0.4248 5.0114 42 1 0.8466 -0.8268 -2.9489 43 1 0.8510 0.7761 -2.1650 44 1 2.4349 0.1303 -4.3600 45 1 2.8736 1.3914 -3.1640 46 1 3.8946 -1.8534 -4.3507 47 1 8.1893 -0.6707 -3.7120 48 1 3.8666 0.2583 -0.7737 49 1 3.9360 -1.5291 -0.8472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:00 Heat of formation + Delta-G solvation = -120.742242 kcal Electronic energy + Delta-G solvation = -27439.268787 eV Core-core repulsion = 23785.290562 eV Total energy + Delta-G solvation = -3653.978224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45478 -40.15340 -38.88672 -37.02866 -35.26065 -34.47403 -33.47681 -31.70603 -30.53911 -30.16300 -29.47726 -26.23915 -25.45403 -23.63845 -23.25889 -21.91559 -21.48888 -21.08679 -20.47316 -19.45969 -18.18642 -17.72400 -17.22184 -16.84943 -16.32465 -16.25601 -16.00615 -15.60699 -15.30430 -14.97627 -14.91425 -14.57624 -14.52176 -14.15593 -13.87397 -13.68570 -13.51771 -13.47162 -13.36267 -13.14286 -13.03534 -12.79117 -12.55531 -12.27619 -12.22723 -12.12316 -12.08743 -11.95133 -11.85299 -11.57737 -11.39650 -11.28659 -11.20592 -10.69296 -10.58006 -10.27533 -10.01917 -9.16099 -8.41589 -6.50425 1.37950 1.47238 1.68014 1.71186 2.09737 2.39592 2.91775 3.08677 3.51968 3.67118 3.76548 3.82232 3.88936 4.02194 4.08894 4.17229 4.20787 4.24237 4.30039 4.34220 4.45677 4.54028 4.55340 4.63339 4.68835 4.71561 4.79119 4.87010 4.95812 4.97166 5.08573 5.09280 5.12704 5.18465 5.20169 5.25535 5.26765 5.31870 5.37466 5.38077 5.47558 5.51352 5.60439 5.95768 6.05317 6.17519 6.54680 6.64119 6.97692 7.27918 7.35529 8.71552 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.003848 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.621150 B = 7274.096696 C = 8129.395552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 H 0.075 0.925 4 C 0.511 3.489 5 O -0.569 6.569 6 N -0.714 5.714 7 C 0.143 3.857 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.115 4.115 11 C -0.117 4.117 12 C -0.117 4.117 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.150 4.150 16 C 0.210 3.790 17 O -0.557 6.557 18 C -0.548 4.548 19 H 0.049 0.951 20 C 0.029 3.971 21 N -0.932 5.932 22 Si 1.002 2.998 23 H -0.272 1.272 24 H -0.337 1.337 25 H -0.288 1.288 26 C 0.079 3.921 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.415 0.585 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.378 0.622 47 H 0.267 0.733 48 H 0.033 0.967 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 2.726 17.785 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 H 0.093 0.907 4 C 0.297 3.703 5 O -0.447 6.447 6 N -0.367 5.367 7 C 0.038 3.962 8 C -0.160 4.160 9 C -0.156 4.156 10 C -0.152 4.152 11 C -0.156 4.156 12 C -0.155 4.155 13 N -0.249 5.249 14 C -0.073 4.073 15 C -0.189 4.189 16 C 0.169 3.831 17 O -0.366 6.366 18 C -0.586 4.586 19 H 0.067 0.933 20 C -0.172 4.172 21 N -0.570 5.570 22 Si 0.838 3.162 23 H -0.198 1.198 24 H -0.270 1.270 25 H -0.215 1.215 26 C -0.049 4.049 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.227 0.773 47 H 0.076 0.924 48 H 0.051 0.949 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.144 1.345 18.309 26.524 hybrid contribution 1.243 0.382 -0.773 1.513 sum -17.900 1.727 17.536 25.118 Atomic orbital electron populations 1.21866 0.89037 1.03397 1.04594 1.21961 0.99229 0.95834 0.88860 0.90747 1.20984 0.79335 0.84241 0.85692 1.90723 1.38732 1.28076 1.87120 1.45918 1.54066 1.32358 1.04399 1.20992 0.97110 0.93540 0.84516 1.21833 0.99775 0.96831 0.97546 1.21512 1.00869 0.98608 0.94658 1.21543 1.00564 0.95870 0.97222 1.21524 0.98848 0.97941 0.97238 1.21776 1.03428 0.97119 0.93134 1.63400 1.06445 1.53243 1.01825 1.22859 0.96310 0.98679 0.89492 1.23254 0.95411 0.99605 1.00645 1.20225 0.92722 0.80217 0.89941 1.86148 1.92752 1.31557 1.26136 1.21540 0.92586 0.94025 1.50436 0.93322 1.25753 0.94793 1.03664 0.92941 1.70065 1.01936 1.38422 1.46600 0.84797 0.72198 0.79696 0.79502 1.19805 1.26995 1.21537 1.22888 0.87089 0.98517 0.96398 0.89496 0.92419 0.88866 0.74799 0.93507 0.89858 0.94793 0.93587 0.90937 0.91001 0.90390 0.93137 0.89612 0.91409 0.88950 0.90094 0.89779 0.89976 0.91618 0.77340 0.92388 0.94902 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.80 71.98 0.63 -1.83 16 2 C 0.05 1.52 2.16 44.17 0.10 1.62 16 3 H 0.07 1.97 8.00 -2.38 -0.02 1.95 16 4 C 0.51 16.60 6.88 87.66 0.60 17.20 16 5 O -0.57 -25.39 14.29 -3.03 -0.04 -25.44 16 6 N -0.71 -15.88 4.93 -442.52 -2.18 -18.06 16 7 C 0.14 3.16 2.45 44.99 0.11 3.27 16 8 C -0.12 -2.49 5.49 30.59 0.17 -2.32 16 9 C -0.12 -2.06 5.92 30.59 0.18 -1.87 16 10 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 11 C -0.12 -1.56 5.92 30.61 0.18 -1.38 16 12 C -0.12 -1.67 5.39 30.61 0.17 -1.51 16 13 N -0.52 -19.72 4.79 -864.74 -4.14 -23.86 16 14 C 0.05 1.67 6.20 86.65 0.54 2.20 16 15 C -0.15 -5.63 6.13 31.78 0.19 -5.43 16 16 C 0.21 10.02 0.71 -10.16 -0.01 10.02 16 17 O -0.56 -26.49 8.77 -148.98 -1.31 -27.80 16 18 C -0.55 -31.39 8.86 25.60 0.23 -31.16 16 19 H 0.05 3.01 8.01 -2.91 -0.02 2.99 16 20 C 0.03 1.71 5.46 84.65 0.46 2.17 16 21 N -0.93 -58.96 13.96 21.45 0.30 -58.66 16 22 Si 1.00 53.80 24.61 68.60 1.69 55.49 16 23 H -0.27 -13.40 7.00 99.48 0.70 -12.71 16 24 H -0.34 -18.38 7.11 99.48 0.71 -17.68 16 25 H -0.29 -16.55 5.74 99.48 0.57 -15.98 16 26 C 0.08 3.76 4.56 86.77 0.40 4.16 16 27 H 0.09 1.33 6.45 -2.39 -0.02 1.32 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.11 7.38 -2.39 -0.02 1.09 16 30 H 0.41 5.82 7.94 -92.71 -0.74 5.09 16 31 H 0.05 1.43 7.58 -2.39 -0.02 1.41 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.00 6.02 -2.39 -0.01 1.98 16 44 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 46 H 0.38 15.72 8.46 -74.05 -0.63 15.10 16 47 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 48 H 0.03 1.60 7.60 -2.39 -0.02 1.58 16 49 H 0.05 2.59 5.82 -2.39 -0.01 2.58 16 Total: -1.00 -80.26 367.48 -2.12 -82.38 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.57 Total: 22.04 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.13 Total: -6.09 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -6.02 Total: -100.58 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -1.35 Total: -53.23 kcal Atomic # 14 Polarization: 53.80 SS G_CDS: 1.69 Total: 55.49 kcal Total: -80.26 -2.12 -82.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.362 kcal (2) G-P(sol) polarization free energy of solvation -80.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds