Wall clock time and date at job start Tue Mar 31 2020 10:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47121 * 2 1 4 4 C 1.42902 * 113.99854 * 180.02562 * 3 2 1 5 5 C 1.53786 * 113.61538 * 210.00083 * 4 3 2 6 6 C 1.53783 * 87.08168 * 220.02209 * 5 4 3 7 7 C 1.52996 * 113.61424 * 139.98130 * 6 5 4 8 8 C 1.50702 * 109.47120 * 176.52543 * 7 6 5 9 9 O 1.21282 * 119.99586 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00022 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00005 * 0.02562 * 10 8 7 12 12 C 1.46501 * 119.99956 * 180.02562 * 10 8 7 13 13 H 1.09005 * 110.63769 * 1.68521 * 12 10 8 14 14 C 1.55148 * 110.72103 * 125.02272 * 12 10 8 15 15 C 1.55133 * 101.48378 * 82.69606 * 14 12 10 16 16 N 1.47426 * 104.72214 * 37.29794 * 15 14 12 17 17 C 1.36939 * 125.64656 * 155.82094 * 16 15 14 18 18 H 1.08005 * 119.99322 * 199.22831 * 17 16 15 19 19 C 1.38809 * 120.00354 * 19.22776 * 17 16 15 20 20 N 1.31616 * 119.99843 * 28.47482 * 19 17 16 21 21 Si 1.86793 * 119.99954 * 208.47891 * 19 17 16 22 22 H 1.48505 * 109.47062 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47375 * 299.99653 * 21 19 17 24 24 H 1.48501 * 109.47132 * 59.99984 * 21 19 17 25 25 C 1.47022 * 108.69976 * 335.54833 * 16 15 14 26 26 C 1.53780 * 87.17329 * 25.38877 * 6 5 4 27 27 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47194 * 299.99540 * 1 2 3 29 29 H 1.09002 * 109.47143 * 60.00008 * 1 2 3 30 30 H 1.09007 * 109.46840 * 240.00262 * 2 1 3 31 31 H 1.08998 * 109.47090 * 120.00742 * 2 1 3 32 32 H 1.08996 * 112.84844 * 341.19781 * 4 3 2 33 33 H 1.08998 * 113.61236 * 105.46847 * 5 4 3 34 34 H 1.09002 * 113.68745 * 334.57692 * 5 4 3 35 35 H 1.09003 * 113.60752 * 270.80172 * 6 5 4 36 36 H 1.09001 * 109.46808 * 56.52881 * 7 6 5 37 37 H 1.08999 * 109.47332 * 296.53052 * 7 6 5 38 38 H 1.08997 * 109.47118 * 269.99928 * 11 10 8 39 39 H 1.08999 * 109.47322 * 29.99573 * 11 10 8 40 40 H 1.09001 * 109.47040 * 149.99897 * 11 10 8 41 41 H 1.09003 * 111.00636 * 200.93085 * 14 12 10 42 42 H 1.09000 * 111.00689 * 324.75047 * 14 12 10 43 43 H 1.09003 * 110.49732 * 278.44913 * 15 14 12 44 44 H 1.09002 * 110.34263 * 156.06155 * 15 14 12 45 45 H 0.97001 * 120.00427 * 5.67258 * 20 19 17 46 46 H 1.09002 * 109.87831 * 120.70897 * 25 16 15 47 47 H 1.09001 * 109.88102 * 241.86904 * 25 16 15 48 48 H 1.08999 * 113.61143 * 89.15825 * 26 6 5 49 49 H 1.08996 * 113.61816 * 220.06169 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9490 2.7250 0.7039 6 6 4.9896 2.8314 -0.4233 7 6 5.2308 4.2645 -0.9015 8 6 6.3221 4.2704 -1.9408 9 8 6.8543 3.2305 -2.2670 10 7 6.7061 5.4310 -2.5083 11 6 6.0628 6.6869 -2.1145 12 6 7.7666 5.4366 -3.5189 13 1 8.1150 4.4227 -3.7158 14 6 7.2769 6.1163 -4.8248 15 6 7.4888 7.6163 -4.4904 16 7 8.7376 7.6529 -3.7077 17 6 9.5704 8.7328 -3.5837 18 1 10.5921 8.5927 -3.2626 19 6 9.1017 10.0074 -3.8707 20 7 7.8259 10.2903 -3.7136 21 14 10.2815 11.3212 -4.4801 22 1 9.5375 12.5852 -4.7128 23 1 11.3381 11.5485 -3.4618 24 1 10.9066 10.8742 -5.7508 25 6 8.9372 6.3399 -3.0769 26 6 4.0039 2.0456 -1.3040 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.9280 0.5455 0.3228 33 1 4.3850 2.5314 1.6840 34 1 3.2314 3.5454 0.7145 35 1 5.9145 2.2931 -0.2158 36 1 5.5306 4.8840 -0.0563 37 1 4.3134 4.6619 -1.3358 38 1 5.2003 6.8699 -2.7553 39 1 5.7364 6.6182 -1.0768 40 1 6.7732 7.5071 -2.2184 41 1 7.8865 5.8124 -5.6758 42 1 6.2235 5.9025 -5.0052 43 1 6.6575 7.9961 -3.8966 44 1 7.5982 8.1969 -5.4064 45 1 7.2287 9.6350 -3.3201 46 1 9.8826 5.9098 -3.4074 47 1 8.9348 6.4456 -1.9920 48 1 3.3005 2.6792 -1.8443 49 1 4.4842 1.3044 -1.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033356607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:51 Heat of formation + Delta-G solvation = -36.960095 kcal Electronic energy + Delta-G solvation = -26382.376193 eV Core-core repulsion = 22732.031035 eV Total energy + Delta-G solvation = -3650.345158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32915 -39.35496 -37.66464 -36.54183 -34.50504 -32.42345 -31.48963 -29.98101 -28.99696 -28.05481 -26.11890 -25.87226 -24.23112 -23.47022 -22.92879 -20.72875 -20.24347 -19.60545 -18.64159 -17.57533 -17.12188 -16.96661 -15.97411 -15.92014 -15.67336 -15.31169 -14.63086 -14.48610 -13.79035 -13.71760 -13.61845 -13.22703 -13.08401 -12.91825 -12.61092 -12.58050 -12.49093 -12.22388 -12.09933 -11.93454 -11.71644 -11.56286 -11.46112 -11.01872 -10.99504 -10.83092 -10.76838 -10.63527 -10.45901 -10.43197 -10.25089 -10.02187 -9.62449 -9.56794 -9.42400 -8.42134 -8.32150 -6.95488 -6.14369 -3.19448 2.82794 3.20938 3.46478 3.48562 3.52916 3.70212 4.30753 4.40654 4.56604 4.59113 4.61391 4.76555 4.84695 4.87317 5.00184 5.04647 5.20905 5.24915 5.32401 5.33541 5.38156 5.40328 5.54009 5.57175 5.57855 5.61437 5.62441 5.64063 5.72147 5.78237 5.82419 5.89647 6.02646 6.07179 6.11255 6.18287 6.25776 6.36773 6.47153 6.61735 6.89763 6.96567 7.01665 7.04491 7.68041 7.79568 8.39331 8.46308 8.98050 9.77416 10.33915 11.18098 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035413 B = 0.002382 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.476203 B =11752.876224 C =11936.346471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.061 3.939 5 C -0.132 4.132 6 C -0.091 4.091 7 C -0.127 4.127 8 C 0.513 3.487 9 O -0.551 6.551 10 N -0.597 5.597 11 C 0.068 3.932 12 C 0.126 3.874 13 H 0.102 0.898 14 C -0.145 4.145 15 C 0.136 3.864 16 N -0.601 5.601 17 C -0.336 4.336 18 H 0.063 0.937 19 C -0.024 4.024 20 N -0.914 5.914 21 Si 1.064 2.936 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.126 3.874 26 C -0.145 4.145 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.266 0.734 46 H 0.034 0.966 47 H 0.028 0.972 48 H 0.087 0.913 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -17.220 7.510 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.003 3.997 5 C -0.170 4.170 6 C -0.110 4.110 7 C -0.167 4.167 8 C 0.301 3.699 9 O -0.429 6.429 10 N -0.329 5.329 11 C -0.075 4.075 12 C 0.022 3.978 13 H 0.120 0.880 14 C -0.185 4.185 15 C 0.010 3.990 16 N -0.328 5.328 17 C -0.464 4.464 18 H 0.081 0.919 19 C -0.226 4.226 20 N -0.554 5.554 21 Si 0.894 3.106 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.000 4.000 26 C -0.183 4.183 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.046 0.954 48 H 0.105 0.895 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.799 -15.944 6.798 20.968 hybrid contribution 0.121 -1.654 0.590 1.760 sum -11.679 -17.598 7.388 22.375 Atomic orbital electron populations 1.21750 0.93894 1.02140 1.03127 1.22492 0.95529 0.84216 0.99907 1.87950 1.20896 1.26060 1.94629 1.23722 0.80727 0.97872 0.97330 1.23312 0.97782 0.97925 0.97964 1.22064 0.97828 0.94906 0.96213 1.21653 0.98384 0.98297 0.98337 1.20646 0.83718 0.83154 0.82367 1.90639 1.56939 1.31616 1.63741 1.47845 1.37463 1.07188 1.40398 1.22099 0.98915 0.87266 0.99222 1.22095 0.87556 1.00388 0.87747 0.88028 1.23180 1.00435 0.98380 0.96482 1.21799 0.89839 0.91942 0.95384 1.44578 1.25594 1.08758 1.53898 1.19705 0.92422 0.85840 1.48441 0.91947 1.25749 0.99618 0.96840 1.00370 1.70819 1.05316 1.36154 1.43128 0.83533 0.74631 0.75984 0.76489 1.21103 1.22021 1.22135 1.21677 0.94824 0.87368 0.96173 1.23545 0.97793 1.00126 0.96819 0.91248 0.91904 0.91835 0.93440 0.93546 0.89679 0.90932 0.88992 0.88069 0.88697 0.88822 0.92754 0.91825 0.88242 0.90654 0.91646 0.94658 0.93350 0.92236 0.94805 0.95401 0.89455 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.38 -3.95 10.36 -35.23 -0.36 -4.31 16 4 C 0.06 0.59 4.31 -25.82 -0.11 0.47 16 5 C -0.13 -1.20 7.48 -25.91 -0.19 -1.40 16 6 C -0.09 -0.98 3.11 -89.81 -0.28 -1.26 16 7 C -0.13 -1.45 4.08 -27.88 -0.11 -1.57 16 8 C 0.51 7.97 7.67 -10.98 -0.08 7.88 16 9 O -0.55 -10.09 15.16 5.56 0.08 -10.01 16 10 N -0.60 -9.81 2.82 -171.84 -0.49 -10.29 16 11 C 0.07 1.04 8.33 59.85 0.50 1.54 16 12 C 0.13 2.30 3.58 -66.10 -0.24 2.07 16 13 H 0.10 1.87 6.99 -51.93 -0.36 1.51 16 14 C -0.15 -2.66 6.54 -24.47 -0.16 -2.82 16 15 C 0.14 3.02 4.50 -2.41 -0.01 3.01 16 16 N -0.60 -14.83 2.84 -169.93 -0.48 -15.31 16 17 C -0.34 -9.34 10.00 -15.06 -0.15 -9.49 16 18 H 0.06 1.75 7.97 -52.48 -0.42 1.33 16 19 C -0.02 -0.67 5.09 -17.43 -0.09 -0.76 16 20 N -0.91 -26.61 13.01 55.49 0.72 -25.89 16 21 Si 1.06 25.05 30.00 -169.99 -5.10 19.95 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.68 6.24 -3.07 -0.02 2.66 16 26 C -0.15 -1.56 7.48 -25.83 -0.19 -1.76 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.10 1.20 7.73 -51.93 -0.40 0.79 16 36 H 0.09 0.97 7.40 -51.93 -0.38 0.58 16 37 H 0.09 0.97 7.84 -51.93 -0.41 0.56 16 38 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 39 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 40 H 0.10 1.93 5.18 -51.93 -0.27 1.66 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.80 4.17 -51.93 -0.22 0.59 16 44 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.27 7.62 6.18 -40.82 -0.25 7.37 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 48 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -31.79 380.03 -8.98 -40.77 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.56 Total: 0.70 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.52 Total: -1.34 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.25 Total: -51.50 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.28 Total: -14.32 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.79 -8.98 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033356607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.809 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds