Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47121 * 2 1 4 4 C 1.42902 * 113.99854 * 180.02562 * 3 2 1 5 5 C 1.53786 * 113.61538 * 210.00083 * 4 3 2 6 6 C 1.53783 * 87.08168 * 220.02209 * 5 4 3 7 7 C 1.52996 * 113.61424 * 139.98130 * 6 5 4 8 8 C 1.50702 * 109.47120 * 176.52543 * 7 6 5 9 9 O 1.21282 * 119.99586 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00022 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00005 * 0.02562 * 10 8 7 12 12 C 1.46501 * 119.99956 * 180.02562 * 10 8 7 13 13 H 1.09005 * 110.63769 * 1.68521 * 12 10 8 14 14 C 1.55148 * 110.72103 * 125.02272 * 12 10 8 15 15 C 1.55133 * 101.48378 * 82.69606 * 14 12 10 16 16 N 1.47426 * 104.72214 * 37.29794 * 15 14 12 17 17 C 1.36939 * 125.64656 * 155.82094 * 16 15 14 18 18 H 1.08005 * 119.99322 * 199.22831 * 17 16 15 19 19 C 1.38809 * 120.00354 * 19.22776 * 17 16 15 20 20 N 1.31616 * 119.99843 * 28.47482 * 19 17 16 21 21 Si 1.86793 * 119.99954 * 208.47891 * 19 17 16 22 22 H 1.48505 * 109.47062 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47375 * 299.99653 * 21 19 17 24 24 H 1.48501 * 109.47132 * 59.99984 * 21 19 17 25 25 C 1.47022 * 108.69976 * 335.54833 * 16 15 14 26 26 C 1.53780 * 87.17329 * 25.38877 * 6 5 4 27 27 H 1.09003 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47194 * 299.99540 * 1 2 3 29 29 H 1.09002 * 109.47143 * 60.00008 * 1 2 3 30 30 H 1.09007 * 109.46840 * 240.00262 * 2 1 3 31 31 H 1.08998 * 109.47090 * 120.00742 * 2 1 3 32 32 H 1.08996 * 112.84844 * 341.19781 * 4 3 2 33 33 H 1.08998 * 113.61236 * 105.46847 * 5 4 3 34 34 H 1.09002 * 113.68745 * 334.57692 * 5 4 3 35 35 H 1.09003 * 113.60752 * 270.80172 * 6 5 4 36 36 H 1.09001 * 109.46808 * 56.52881 * 7 6 5 37 37 H 1.08999 * 109.47332 * 296.53052 * 7 6 5 38 38 H 1.08997 * 109.47118 * 269.99928 * 11 10 8 39 39 H 1.08999 * 109.47322 * 29.99573 * 11 10 8 40 40 H 1.09001 * 109.47040 * 149.99897 * 11 10 8 41 41 H 1.09003 * 111.00636 * 200.93085 * 14 12 10 42 42 H 1.09000 * 111.00689 * 324.75047 * 14 12 10 43 43 H 1.09003 * 110.49732 * 278.44913 * 15 14 12 44 44 H 1.09002 * 110.34263 * 156.06155 * 15 14 12 45 45 H 0.97001 * 120.00427 * 5.67258 * 20 19 17 46 46 H 1.09002 * 109.87831 * 120.70897 * 25 16 15 47 47 H 1.09001 * 109.88102 * 241.86904 * 25 16 15 48 48 H 1.08999 * 113.61143 * 89.15825 * 26 6 5 49 49 H 1.08996 * 113.61816 * 220.06169 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9490 2.7250 0.7039 6 6 4.9896 2.8314 -0.4233 7 6 5.2308 4.2645 -0.9015 8 6 6.3221 4.2704 -1.9408 9 8 6.8543 3.2305 -2.2670 10 7 6.7061 5.4310 -2.5083 11 6 6.0628 6.6869 -2.1145 12 6 7.7666 5.4366 -3.5189 13 1 8.1150 4.4227 -3.7158 14 6 7.2769 6.1163 -4.8248 15 6 7.4888 7.6163 -4.4904 16 7 8.7376 7.6529 -3.7077 17 6 9.5704 8.7328 -3.5837 18 1 10.5921 8.5927 -3.2626 19 6 9.1017 10.0074 -3.8707 20 7 7.8259 10.2903 -3.7136 21 14 10.2815 11.3212 -4.4801 22 1 9.5375 12.5852 -4.7128 23 1 11.3381 11.5485 -3.4618 24 1 10.9066 10.8742 -5.7508 25 6 8.9372 6.3399 -3.0769 26 6 4.0039 2.0456 -1.3040 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.9280 0.5455 0.3228 33 1 4.3850 2.5314 1.6840 34 1 3.2314 3.5454 0.7145 35 1 5.9145 2.2931 -0.2158 36 1 5.5306 4.8840 -0.0563 37 1 4.3134 4.6619 -1.3358 38 1 5.2003 6.8699 -2.7553 39 1 5.7364 6.6182 -1.0768 40 1 6.7732 7.5071 -2.2184 41 1 7.8865 5.8124 -5.6758 42 1 6.2235 5.9025 -5.0052 43 1 6.6575 7.9961 -3.8966 44 1 7.5982 8.1969 -5.4064 45 1 7.2287 9.6350 -3.3201 46 1 9.8826 5.9098 -3.4074 47 1 8.9348 6.4456 -1.9920 48 1 3.3005 2.6792 -1.8443 49 1 4.4842 1.3044 -1.9427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033356607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = -55.160892 kcal Electronic energy + Delta-G solvation = -26383.165439 eV Core-core repulsion = 22732.031035 eV Total energy + Delta-G solvation = -3651.134403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51167 -40.35936 -39.11008 -37.36269 -36.08319 -34.21839 -32.21553 -31.26950 -30.54060 -29.54255 -27.58956 -26.64078 -26.07398 -24.39217 -23.61109 -22.15710 -21.97736 -20.45295 -19.97115 -19.56543 -18.28499 -17.88776 -17.22120 -16.82641 -16.56771 -16.34101 -16.24964 -15.71704 -15.65135 -15.19678 -14.82108 -14.61091 -14.05809 -14.01927 -13.75013 -13.55813 -13.47452 -13.36984 -13.33912 -13.12312 -13.02555 -12.64112 -12.60445 -12.50418 -12.24295 -12.17231 -12.09537 -11.97024 -11.86672 -11.75290 -11.58563 -11.56038 -11.25226 -10.71577 -10.49555 -10.33197 -9.70077 -8.99403 -8.32143 -5.34794 1.58364 1.60546 1.65527 1.84771 1.95437 2.63215 2.78957 3.18276 3.37727 3.51068 3.62512 3.69808 3.78196 3.86433 3.87477 3.95707 4.14081 4.16533 4.20713 4.24835 4.36397 4.43041 4.45450 4.50512 4.52906 4.59216 4.67217 4.72217 4.78374 4.83058 4.85431 4.88259 4.89897 4.90125 4.99892 5.02971 5.07895 5.09408 5.24218 5.25109 5.27808 5.45486 5.53651 5.68610 6.34123 6.37054 6.41734 6.91088 7.14170 7.68900 8.28428 9.00221 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035413 B = 0.002382 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.476203 B =11752.876224 C =11936.346471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.394 6.394 4 C 0.063 3.937 5 C -0.121 4.121 6 C -0.091 4.091 7 C -0.120 4.120 8 C 0.511 3.489 9 O -0.580 6.580 10 N -0.601 5.601 11 C 0.073 3.927 12 C 0.137 3.863 13 H 0.105 0.895 14 C -0.129 4.129 15 C 0.141 3.859 16 N -0.617 5.617 17 C -0.350 4.350 18 H 0.052 0.948 19 C -0.070 4.070 20 N -0.936 5.936 21 Si 1.113 2.887 22 H -0.289 1.289 23 H -0.277 1.277 24 H -0.284 1.284 25 C 0.128 3.872 26 C -0.149 4.149 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.034 0.966 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.031 0.969 47 H 0.017 0.983 48 H 0.083 0.917 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 -18.093 8.303 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.314 6.314 4 C 0.005 3.995 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.159 4.159 8 C 0.302 3.698 9 O -0.461 6.461 10 N -0.332 5.332 11 C -0.069 4.069 12 C 0.033 3.967 13 H 0.122 0.878 14 C -0.168 4.168 15 C 0.016 3.984 16 N -0.344 5.344 17 C -0.478 4.478 18 H 0.070 0.930 19 C -0.267 4.267 20 N -0.578 5.578 21 Si 0.938 3.062 22 H -0.215 1.215 23 H -0.203 1.203 24 H -0.211 1.211 25 C 0.002 3.998 26 C -0.187 4.187 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.101 0.899 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.819 -16.846 7.607 22.494 hybrid contribution 0.435 -1.457 0.366 1.564 sum -12.384 -18.303 7.973 23.493 Atomic orbital electron populations 1.21766 0.93048 1.03269 1.02638 1.22688 0.96306 0.83324 1.00579 1.87925 1.21205 1.27595 1.94672 1.23745 0.80647 0.98626 0.96495 1.23244 0.96960 0.97717 0.97938 1.22007 0.97667 0.94262 0.97088 1.21717 0.97364 0.99286 0.97563 1.21363 0.83981 0.82134 0.82360 1.90629 1.58154 1.32571 1.64715 1.47909 1.37088 1.08053 1.40186 1.22055 0.97941 0.85339 1.01591 1.21834 0.87213 0.99477 0.88189 0.87750 1.23076 1.01988 0.95066 0.96702 1.21739 0.88856 0.94226 0.93555 1.44739 1.25920 1.09058 1.54721 1.19899 0.92531 0.87113 1.48302 0.93003 1.27028 1.00416 0.98963 1.00324 1.70901 1.05983 1.36302 1.44655 0.82872 0.73225 0.73470 0.76657 1.21521 1.20273 1.21099 1.21711 0.96244 0.86614 0.95273 1.23548 0.97850 1.00006 0.97249 0.89355 0.92097 0.92575 0.93255 0.92368 0.88595 0.89524 0.88614 0.89303 0.86811 0.87059 0.91417 0.88632 0.92317 0.89950 0.89400 0.94829 0.96528 0.93010 0.95096 0.96519 0.89866 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.39 -7.61 10.36 -148.98 -1.54 -9.16 16 4 C 0.06 1.08 4.31 31.18 0.13 1.22 16 5 C -0.12 -1.89 7.48 31.12 0.23 -1.66 16 6 C -0.09 -1.78 3.11 -10.27 -0.03 -1.82 16 7 C -0.12 -2.44 4.08 29.85 0.12 -2.31 16 8 C 0.51 15.02 7.67 87.66 0.67 15.70 16 9 O -0.58 -20.68 15.16 -3.04 -0.05 -20.73 16 10 N -0.60 -18.90 2.82 -815.98 -2.30 -21.20 16 11 C 0.07 2.15 8.33 127.77 1.06 3.21 16 12 C 0.14 4.93 3.58 46.18 0.17 5.10 16 13 H 0.10 3.75 6.99 -2.38 -0.02 3.74 16 14 C -0.13 -4.59 6.54 32.06 0.21 -4.38 16 15 C 0.14 6.37 4.50 86.93 0.39 6.76 16 16 N -0.62 -31.01 2.84 -691.53 -1.97 -32.97 16 17 C -0.35 -19.79 10.00 84.03 0.84 -18.95 16 18 H 0.05 2.97 7.97 -2.91 -0.02 2.95 16 19 C -0.07 -3.96 5.09 84.86 0.43 -3.52 16 20 N -0.94 -55.40 13.01 21.65 0.28 -55.12 16 21 Si 1.11 50.81 30.00 68.60 2.06 52.87 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 C 0.13 5.49 6.24 86.73 0.54 6.03 16 26 C -0.15 -3.01 7.48 31.18 0.23 -2.78 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 1.43 7.87 -2.39 -0.02 1.41 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.09 1.99 7.73 -2.39 -0.02 1.97 16 36 H 0.11 1.93 7.40 -2.39 -0.02 1.91 16 37 H 0.11 1.93 7.84 -2.39 -0.02 1.91 16 38 H 0.07 1.80 7.98 -2.39 -0.02 1.78 16 39 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 40 H 0.06 2.27 5.18 -2.39 -0.01 2.25 16 41 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.03 1.55 4.17 -2.39 -0.01 1.54 16 44 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 45 H 0.26 15.21 6.18 -92.71 -0.57 14.63 16 46 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.02 0.76 8.04 -2.39 -0.02 0.74 16 48 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.27 380.03 3.80 -65.47 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.11 Total: 18.11 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.22 Total: 2.73 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.99 Total: -109.29 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.59 Total: -29.88 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.06 Total: 52.87 kcal Total: -69.27 3.80 -65.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033356607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.311 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds