Wall clock time and date at job start Tue Mar 31 2020 09:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00028 * 2 1 4 4 H 1.08996 * 109.47578 * 330.00025 * 3 2 1 5 5 C 1.53004 * 109.47126 * 90.00200 * 3 2 1 6 6 C 1.50705 * 109.47182 * 210.00201 * 3 2 1 7 7 O 1.21279 * 119.99858 * 347.51439 * 6 3 2 8 8 N 1.34775 * 120.00142 * 167.51760 * 6 3 2 9 9 C 1.43443 * 120.53755 * 188.47088 * 8 6 3 10 10 C 1.54911 * 116.06430 * 271.65528 * 9 8 6 11 11 C 1.54880 * 110.15798 * 318.65862 * 10 9 8 12 12 C 1.50005 * 110.87597 * 321.08603 * 11 10 9 13 13 C 1.52654 * 105.54499 * 97.57663 * 12 11 10 14 14 C 1.55375 * 108.42247 * 145.54536 * 13 12 11 15 15 C 1.54290 * 102.94986 * 210.15818 * 14 13 12 16 16 N 1.47009 * 107.26292 * 22.40834 * 15 14 13 17 17 C 1.36927 * 125.65820 * 180.88080 * 16 15 14 18 18 H 1.07997 * 120.00443 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99987 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00251 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47131 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47185 * 120.00588 * 21 19 17 24 24 H 1.48502 * 109.46875 * 240.00217 * 21 19 17 25 25 C 1.47382 * 108.67922 * 1.14134 * 16 15 14 26 26 C 1.46364 * 114.33824 * 270.89954 * 13 12 11 27 27 H 1.08997 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46473 * 299.99941 * 1 2 3 29 29 H 1.08998 * 109.47173 * 59.99711 * 1 2 3 30 30 H 1.08995 * 109.47012 * 204.68594 * 5 3 2 31 31 H 1.08991 * 109.47288 * 324.69333 * 5 3 2 32 32 H 1.09004 * 109.47216 * 84.69007 * 5 3 2 33 33 H 1.09003 * 108.16607 * 33.36869 * 9 8 6 34 34 H 1.09006 * 108.16132 * 150.15122 * 9 8 6 35 35 H 1.09000 * 109.35816 * 78.87229 * 10 9 8 36 36 H 1.09002 * 109.35594 * 198.59123 * 10 9 8 37 37 H 1.08997 * 109.19470 * 81.44182 * 11 10 9 38 38 H 1.09000 * 109.19948 * 200.77285 * 11 10 9 39 39 H 1.08995 * 110.23025 * 338.56553 * 12 11 10 40 40 H 1.09009 * 110.22421 * 216.57650 * 12 11 10 41 41 H 1.09001 * 110.72310 * 91.79244 * 14 13 12 42 42 H 1.09001 * 110.72344 * 328.52284 * 14 13 12 43 43 H 1.08999 * 109.88422 * 262.99415 * 15 14 13 44 44 H 1.09001 * 109.88285 * 141.82174 * 15 14 13 45 45 H 0.96997 * 120.00360 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.36671 * 94.36858 * 25 16 15 47 47 H 1.09002 * 110.36837 * 216.69307 * 25 16 15 48 48 H 1.09001 * 109.83635 * 177.72277 * 26 13 12 49 49 H 1.08999 * 109.83723 * 298.61339 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7105 7 8 3.8541 0.1973 -0.9706 8 7 3.9539 2.4119 -1.0567 9 6 5.1225 2.3905 -1.8883 10 6 6.4787 2.2507 -1.1530 11 6 6.4870 3.1287 0.1229 12 6 5.7970 4.4374 -0.1243 13 6 4.3767 4.2576 0.4056 14 6 3.8995 5.6113 1.0004 15 6 2.9281 5.1752 2.1169 16 7 3.2802 3.7969 2.4877 17 6 2.6443 3.0374 3.4330 18 1 2.9811 2.0310 3.6333 19 6 1.5666 3.5609 4.1341 20 7 1.1558 4.7872 3.8899 21 14 0.6996 2.5249 5.4243 22 1 1.3501 1.1927 5.5084 23 1 0.7866 3.2019 6.7431 24 1 -0.7270 2.3570 5.0473 25 6 4.4352 3.3705 1.6775 26 6 3.4278 3.7337 -0.5779 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 2.2330 2.8607 1.4738 31 1 1.4029 1.4012 2.0646 32 1 3.1653 1.3838 1.8168 33 1 5.0274 1.5589 -2.5867 34 1 5.1458 3.3149 -2.4654 35 1 6.6334 1.2081 -0.8752 36 1 7.2833 2.5713 -1.8149 37 1 5.9741 2.5991 0.9257 38 1 7.5183 3.3186 0.4206 39 1 5.7760 4.6567 -1.1918 40 1 6.3023 5.2379 0.4163 41 1 3.3797 6.2022 0.2461 42 1 4.7397 6.1677 1.4159 43 1 1.9022 5.2098 1.7502 44 1 3.0376 5.8309 2.9807 45 1 0.4030 5.1532 4.3800 46 1 5.3643 3.5456 2.2199 47 1 4.3434 2.3177 1.4105 48 1 2.4514 3.5967 -0.1132 49 1 3.3444 4.4252 -1.4163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045918708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:57 Heat of formation + Delta-G solvation = 6.393891 kcal Electronic energy + Delta-G solvation = -29865.178213 eV Core-core repulsion = 26216.713025 eV Total energy + Delta-G solvation = -3648.465188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04664 -38.61772 -37.31022 -35.87261 -33.84562 -33.05986 -31.09403 -30.61880 -28.66708 -26.84133 -26.25489 -25.89101 -25.28030 -23.42268 -22.94748 -20.96630 -19.91963 -18.61596 -18.40375 -17.37527 -16.78990 -16.21111 -15.53497 -15.26338 -15.19494 -14.71938 -14.45564 -14.19542 -14.11628 -13.75859 -13.63988 -13.14767 -12.89958 -12.55085 -12.45504 -12.12983 -11.96843 -11.85151 -11.65023 -11.43615 -11.19245 -11.01510 -10.97631 -10.86768 -10.77787 -10.63140 -10.36130 -10.15198 -10.11533 -10.04313 -9.77873 -9.60959 -9.49094 -9.18994 -8.99462 -8.43506 -8.37264 -6.69735 -5.83417 -3.18034 2.98480 3.12994 3.32879 3.41708 3.43138 4.23051 4.40436 4.82263 4.85346 5.05406 5.14391 5.20397 5.25121 5.33144 5.36038 5.41691 5.47212 5.59724 5.63915 5.70192 5.73878 5.84592 5.90971 5.92006 5.95678 6.00229 6.05259 6.08386 6.16797 6.25268 6.31179 6.40960 6.46988 6.53604 6.55754 6.67551 6.75886 6.84948 6.88915 6.96993 7.45241 7.47340 7.50747 7.66131 7.73250 7.83254 8.12036 8.59086 9.10045 9.68733 10.31323 11.26738 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.007435 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.669862 B = 3764.865280 C = 5202.960069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.057 3.943 4 H 0.070 0.930 5 C -0.185 4.185 6 C 0.525 3.475 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.121 3.879 10 C -0.132 4.132 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.099 4.099 14 C -0.135 4.135 15 C 0.169 3.831 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.082 0.918 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.130 3.870 26 C 0.130 3.870 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.155 0.845 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 1.203 -10.827 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.004 4.004 4 H 0.088 0.912 5 C -0.243 4.243 6 C 0.313 3.687 7 O -0.409 6.409 8 N -0.339 5.339 9 C -0.003 4.003 10 C -0.171 4.171 11 C -0.178 4.178 12 C -0.138 4.138 13 C -0.101 4.101 14 C -0.174 4.174 15 C 0.045 3.955 16 N -0.325 5.325 17 C -0.353 4.353 18 H 0.100 0.900 19 C -0.199 4.199 20 N -0.563 5.563 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.005 3.995 26 C 0.010 3.990 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.171 0.829 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.120 0.880 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.402 0.460 -10.801 11.672 hybrid contribution -0.588 -0.211 0.865 1.067 sum 3.813 0.248 -9.936 10.646 Atomic orbital electron populations 1.22765 0.81429 1.02258 1.00002 1.87948 1.18984 1.26764 1.95217 1.22620 0.91867 0.85290 1.00603 0.91178 1.24163 1.01814 1.09422 0.88862 1.20617 0.86928 0.83264 0.77876 1.90642 1.66875 1.29455 1.53910 1.47944 1.27487 1.06502 1.51974 1.20876 0.85285 1.01849 0.92336 1.22604 0.96493 1.00527 0.97495 1.21904 1.00455 0.96559 0.98922 1.21110 0.94731 0.97306 1.00612 1.20901 0.95235 0.97649 0.96292 1.23136 1.00307 0.94866 0.99136 1.21234 0.95021 0.85717 0.93556 1.44947 1.32714 1.12101 1.42724 1.18960 1.08977 0.95800 1.11530 0.90024 1.24734 0.98977 0.96533 0.99692 1.69954 1.28495 1.14177 1.43702 0.86189 0.79512 0.79552 0.81529 1.20285 1.21722 1.21640 1.22255 0.90650 0.97211 0.89381 1.21093 0.98653 0.82783 0.96501 0.89963 0.93512 0.94609 0.82882 0.92361 0.92589 0.91533 0.91496 0.91878 0.91635 0.89423 0.92993 0.91931 0.91568 0.92071 0.91942 0.93306 0.93769 0.93691 0.95832 0.92243 0.87967 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.77 101.05 1.09 1.57 16 2 O -0.37 -7.16 9.89 -54.83 -0.54 -7.70 16 3 C 0.06 1.05 2.29 -27.88 -0.06 0.99 16 4 H 0.07 1.16 7.02 -51.93 -0.36 0.79 16 5 C -0.19 -3.76 4.59 37.16 0.17 -3.59 16 6 C 0.52 9.82 6.07 -10.98 -0.07 9.75 16 7 O -0.53 -11.68 16.26 -14.04 -0.23 -11.91 16 8 N -0.60 -9.28 2.14 -175.50 -0.38 -9.66 16 9 C 0.12 1.61 4.84 -4.65 -0.02 1.59 16 10 C -0.13 -1.69 6.41 -24.73 -0.16 -1.85 16 11 C -0.14 -1.90 5.18 -27.23 -0.14 -2.04 16 12 C -0.10 -1.27 4.99 -28.40 -0.14 -1.41 16 13 C -0.10 -1.47 0.49 -155.43 -0.08 -1.55 16 14 C -0.14 -2.12 5.85 -24.80 -0.14 -2.27 16 15 C 0.17 3.52 4.75 -3.09 -0.01 3.51 16 16 N -0.60 -13.07 1.74 -169.97 -0.30 -13.36 16 17 C -0.23 -5.54 6.26 -15.06 -0.09 -5.63 16 18 H 0.08 2.05 6.69 -52.49 -0.35 1.70 16 19 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 20 N -0.92 -24.32 10.31 55.49 0.57 -23.75 16 21 Si 0.90 20.98 29.55 -169.99 -5.02 15.95 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.13 2.41 3.36 -2.41 -0.01 2.41 16 26 C 0.13 1.87 4.37 -5.18 -0.02 1.84 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.70 7.77 -51.93 -0.40 0.30 16 29 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.15 3.23 2.16 -62.62 -0.14 3.09 16 31 H 0.06 1.26 7.37 -51.93 -0.38 0.87 16 32 H 0.06 1.22 4.79 -51.93 -0.25 0.97 16 33 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 34 H 0.07 0.73 6.89 -51.93 -0.36 0.37 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.42 4.01 -51.93 -0.21 1.21 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 40 H 0.07 0.82 7.36 -51.92 -0.38 0.44 16 41 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 42 H 0.06 0.95 7.44 -51.93 -0.39 0.56 16 43 H 0.05 1.11 7.39 -51.93 -0.38 0.73 16 44 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 45 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 46 H 0.02 0.46 7.00 -51.93 -0.36 0.10 16 47 H 0.06 1.19 3.10 -51.93 -0.16 1.03 16 48 H 0.10 1.64 4.12 -51.93 -0.21 1.42 16 49 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -28.97 336.53 -8.15 -37.12 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.54 Total: 5.09 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 0.21 Total: 3.14 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.10 Total: -46.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.77 Total: -19.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.97 -8.15 -37.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045918708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.517 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds