Wall clock time and date at job start Tue Mar 31 2020 10:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45205 * 109.46759 * 2 1 4 4 C 1.34636 * 116.99953 * 180.02562 * 3 2 1 5 5 O 1.21514 * 119.99872 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00040 * 179.72626 * 4 3 2 7 7 C 1.48293 * 128.20775 * 179.97438 * 6 4 3 8 8 H 1.08997 * 112.20950 * 343.25016 * 7 6 4 9 9 C 1.54607 * 104.26094 * 221.59256 * 7 6 4 10 10 C 1.54825 * 104.65295 * 334.75098 * 9 7 6 11 11 C 1.48291 * 128.21017 * 359.67470 * 6 4 3 12 12 H 1.09000 * 112.20687 * 16.14795 * 11 6 4 13 13 C 1.54550 * 106.83441 * 253.07777 * 11 6 4 14 14 C 1.53147 * 108.82335 * 295.79657 * 13 11 6 15 15 H 1.09002 * 109.43468 * 174.09559 * 14 13 11 16 16 N 1.46903 * 109.40297 * 293.99146 * 14 13 11 17 17 C 1.46900 * 110.99526 * 302.18784 * 16 14 13 18 18 C 1.52994 * 109.47414 * 301.07528 * 17 16 14 19 19 C 1.46898 * 111.00003 * 178.23462 * 16 14 13 20 20 C 1.50699 * 109.46849 * 185.72451 * 19 16 14 21 21 H 1.07996 * 120.00228 * 358.41123 * 20 19 16 22 22 C 1.37882 * 119.99995 * 178.40922 * 20 19 16 23 23 N 1.31513 * 119.99678 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00204 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.47005 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47033 * 120.00047 * 24 22 20 27 27 H 1.48496 * 109.47517 * 240.00311 * 24 22 20 28 28 C 1.53150 * 109.68998 * 54.03332 * 14 13 11 29 29 H 1.08992 * 109.47539 * 299.99684 * 1 2 3 30 30 H 1.09000 * 109.46918 * 60.00220 * 1 2 3 31 31 H 1.09006 * 109.46553 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46877 * 240.00455 * 2 1 3 33 33 H 1.08992 * 109.47058 * 120.00102 * 2 1 3 34 34 H 1.09003 * 110.37759 * 93.68035 * 9 7 6 35 35 H 1.08992 * 110.38512 * 216.04479 * 9 7 6 36 36 H 1.08997 * 110.33599 * 241.26081 * 10 9 7 37 37 H 1.09004 * 110.62299 * 118.87671 * 10 9 7 38 38 H 1.09001 * 109.47954 * 176.06791 * 13 11 6 39 39 H 1.08995 * 109.81810 * 55.72803 * 13 11 6 40 40 H 1.09005 * 109.47139 * 61.07691 * 17 16 14 41 41 H 1.08997 * 109.46803 * 181.07111 * 17 16 14 42 42 H 1.08999 * 109.46902 * 304.77279 * 18 17 16 43 43 H 1.08993 * 109.47443 * 64.77217 * 18 17 16 44 44 H 1.09006 * 109.47329 * 184.77735 * 18 17 16 45 45 H 1.08997 * 109.47239 * 305.72755 * 19 16 14 46 46 H 1.09003 * 109.47139 * 65.72766 * 19 16 14 47 47 H 0.97005 * 119.99817 * 179.97438 * 23 22 20 48 48 H 1.08992 * 109.57453 * 186.28740 * 28 14 13 49 49 H 1.09005 * 109.66471 * 65.98701 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5455 -0.0005 5 8 4.0890 0.5819 -0.0005 6 7 3.8638 2.7910 -0.0061 7 6 5.2911 3.1932 -0.0072 8 1 5.9496 2.3763 0.2879 9 6 5.3531 4.3799 0.9819 10 6 3.9224 4.9716 0.9739 11 6 3.1376 4.0838 -0.0188 12 1 2.0892 3.9702 0.2569 13 6 3.3016 4.6754 -1.4372 14 6 4.7835 4.9770 -1.6786 15 1 4.9252 5.2959 -2.7112 16 7 5.2174 6.0485 -0.7721 17 6 4.4083 7.2596 -0.9634 18 6 4.5334 7.7328 -2.4129 19 6 6.6472 6.3377 -0.9452 20 6 7.0866 7.3378 0.0930 21 1 6.3694 7.7396 0.7933 22 6 8.4043 7.7398 0.1487 23 7 9.2776 7.2507 -0.7044 24 14 8.9489 8.9800 1.4351 25 1 7.7839 9.3736 2.2677 26 1 9.9914 8.3710 2.2997 27 1 9.5044 10.1809 0.7610 28 6 5.6158 3.7186 -1.4151 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.6159 4.0289 1.9799 35 1 6.0723 5.1233 0.6384 36 1 3.9416 6.0045 0.6264 37 1 3.4776 4.9142 1.9674 38 1 2.7240 5.5965 -1.5159 39 1 2.9493 3.9590 -2.1793 40 1 3.3642 7.0377 -0.7424 41 1 4.7629 8.0429 -0.2935 42 1 5.5858 7.8735 -2.6596 43 1 4.1012 6.9851 -3.0779 44 1 4.0025 8.6771 -2.5340 45 1 7.2206 5.4180 -0.8293 46 1 6.8169 6.7487 -1.9404 47 1 10.2046 7.5338 -0.6654 48 1 6.6762 3.9624 -1.4783 49 1 5.3718 2.9560 -2.1548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255206607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:00 Heat of formation + Delta-G solvation = -27.873308 kcal Electronic energy + Delta-G solvation = -28520.551468 eV Core-core repulsion = 24870.600343 eV Total energy + Delta-G solvation = -3649.951125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13447 -39.63803 -36.75410 -35.86506 -32.82660 -32.21955 -31.41186 -30.97971 -30.57264 -28.92635 -26.36616 -24.13004 -23.85170 -23.22773 -22.80249 -21.62617 -20.19167 -19.58829 -18.53215 -17.40442 -16.71098 -16.45233 -16.25681 -16.21224 -14.90861 -14.62495 -14.26811 -14.00931 -13.85236 -13.43778 -13.27974 -12.97394 -12.87248 -12.64579 -12.51545 -12.26367 -12.07412 -11.98534 -11.86819 -11.70533 -11.55010 -11.46616 -10.98243 -10.93192 -10.78891 -10.73223 -10.49858 -10.38721 -10.24923 -10.15374 -9.98028 -9.92333 -9.54177 -9.35828 -9.14249 -8.49876 -8.36401 -7.03686 -6.08826 -4.10084 2.27072 3.06403 3.27597 3.36528 3.39307 4.08609 4.37234 4.79402 4.82077 4.87383 5.02095 5.04777 5.16676 5.26584 5.30408 5.40135 5.45228 5.55434 5.61786 5.62806 5.69902 5.72641 5.76763 5.79466 5.93578 5.96319 6.01122 6.11863 6.17413 6.26455 6.36971 6.45971 6.48267 6.52155 6.56101 6.63922 6.71998 6.75425 6.85087 7.13451 7.25421 7.34635 7.60641 7.73189 7.88509 8.01149 8.11107 8.45086 8.52046 8.97818 9.54795 11.01701 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.003958 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.759768 B = 7072.078832 C = 7474.095115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 O -0.372 6.372 4 C 0.665 3.335 5 O -0.585 6.585 6 N -0.597 5.597 7 C 0.159 3.841 8 H 0.090 0.910 9 C -0.129 4.129 10 C -0.117 4.117 11 C 0.136 3.864 12 H 0.087 0.913 13 C -0.123 4.123 14 C 0.081 3.919 15 H 0.040 0.960 16 N -0.515 5.515 17 C 0.046 3.954 18 C -0.186 4.186 19 C 0.177 3.823 20 C -0.508 4.508 21 H 0.065 0.935 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.287 1.287 28 C -0.126 4.126 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.149 0.851 36 H 0.121 0.879 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.040 0.960 46 H -0.004 1.004 47 H 0.261 0.739 48 H 0.090 0.910 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 -7.194 -0.494 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.287 6.287 4 C 0.420 3.580 5 O -0.475 6.475 6 N -0.337 5.337 7 C 0.059 3.941 8 H 0.108 0.892 9 C -0.167 4.167 10 C -0.155 4.155 11 C 0.034 3.966 12 H 0.105 0.895 13 C -0.161 4.161 14 C -0.028 4.028 15 H 0.057 0.943 16 N -0.240 5.240 17 C -0.082 4.082 18 C -0.245 4.245 19 C 0.052 3.948 20 C -0.547 4.547 21 H 0.083 0.917 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.721 3.279 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.213 1.213 28 C -0.164 4.164 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.166 0.834 36 H 0.138 0.862 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.014 0.986 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.055 -7.820 -0.065 16.964 hybrid contribution 0.535 0.655 -0.343 0.912 sum -14.520 -7.165 -0.407 16.196 Atomic orbital electron populations 1.21810 0.92834 1.02769 1.03439 1.22857 0.94545 0.79366 1.02502 1.86236 1.22621 1.32449 1.87391 1.17521 0.80727 0.83136 0.76610 1.90961 1.59919 1.39196 1.57469 1.48190 1.09469 1.02191 1.73890 1.22309 0.78690 0.96723 0.96428 0.89227 1.23193 1.00137 0.97132 0.96258 1.22936 0.94370 1.02395 0.95834 1.22503 0.96026 0.81953 0.96168 0.89472 1.22310 0.96935 1.00596 0.96289 1.21555 0.93433 0.92655 0.95170 0.94266 1.63395 1.06700 1.05574 1.48332 1.22195 0.96884 0.93812 0.95302 1.22360 1.02861 1.00023 0.99274 1.19943 0.81784 0.96947 0.96116 1.21160 0.93853 1.23947 1.15706 0.91662 1.24956 0.96775 0.96633 0.95971 1.69956 1.03244 1.43800 1.36401 0.86516 0.78731 0.81060 0.81551 1.19644 1.21100 1.21305 1.22219 1.01700 0.96445 0.96059 0.91550 0.91574 0.90251 0.91485 0.91463 0.94080 0.83374 0.86153 0.94231 0.90577 0.92328 0.92325 0.89534 0.91429 0.93869 0.93543 0.94188 0.98582 0.92967 0.89149 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.08 0.93 6.19 37.16 0.23 1.16 16 3 O -0.37 -5.46 9.79 -40.31 -0.39 -5.86 16 4 C 0.67 11.52 8.72 54.06 0.47 11.99 16 5 O -0.59 -11.66 16.45 -19.28 -0.32 -11.98 16 6 N -0.60 -9.81 2.74 -158.37 -0.43 -10.25 16 7 C 0.16 2.73 4.08 -65.71 -0.27 2.46 16 8 H 0.09 1.61 7.93 -51.93 -0.41 1.20 16 9 C -0.13 -2.25 5.95 -24.92 -0.15 -2.40 16 10 C -0.12 -1.80 5.95 -24.94 -0.15 -1.95 16 11 C 0.14 1.97 4.15 -65.30 -0.27 1.70 16 12 H 0.09 1.16 7.92 -51.93 -0.41 0.75 16 13 C -0.12 -1.71 5.20 -25.84 -0.13 -1.84 16 14 C 0.08 1.30 1.79 -67.56 -0.12 1.18 16 15 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 16 N -0.52 -9.03 0.55 -227.90 -0.12 -9.16 16 17 C 0.05 0.74 4.08 -3.83 -0.02 0.72 16 18 C -0.19 -2.94 9.18 37.15 0.34 -2.60 16 19 C 0.18 3.92 3.07 -4.98 -0.02 3.91 16 20 C -0.51 -12.52 7.88 -34.44 -0.27 -12.79 16 21 H 0.07 1.59 6.76 -52.49 -0.35 1.23 16 22 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 24 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.13 -2.12 5.18 -26.27 -0.14 -2.25 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.15 2.96 3.22 -51.93 -0.17 2.79 16 36 H 0.12 1.89 3.58 -51.93 -0.19 1.70 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.96 6.06 -51.93 -0.31 0.65 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.81 5.39 -51.93 -0.28 0.53 16 41 H 0.09 1.55 6.41 -51.93 -0.33 1.22 16 42 H 0.07 1.27 6.27 -51.93 -0.33 0.94 16 43 H 0.04 0.63 6.70 -51.93 -0.35 0.28 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.97 5.28 -51.93 -0.27 0.69 16 46 H 0.00 -0.09 6.26 -51.93 -0.33 -0.41 16 47 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.09 1.65 5.93 -51.93 -0.31 1.35 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -28.30 354.80 -8.15 -36.45 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.74 Total: 4.25 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -0.20 Total: -0.09 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.18 Total: -43.51 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.71 Total: -17.83 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.30 -8.15 -36.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255206607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds