Wall clock time and date at job start Tue Mar 31 2020 10:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00008 * 2 1 4 4 O 1.21286 * 120.00029 * 4.27292 * 3 2 1 5 5 C 1.50698 * 120.00179 * 184.27471 * 3 2 1 6 6 H 1.08998 * 109.52206 * 42.25697 * 5 3 2 7 7 C 1.53179 * 109.52148 * 162.37867 * 5 3 2 8 8 C 1.53178 * 109.03595 * 176.88788 * 7 5 3 9 9 C 1.53089 * 109.16183 * 303.02228 * 8 7 5 10 10 O 1.42899 * 109.41873 * 57.60498 * 9 8 7 11 11 C 1.42908 * 114.15715 * 298.87959 * 10 9 8 12 12 C 1.46497 * 119.99970 * 180.02562 * 2 1 3 13 13 H 1.09004 * 108.44548 * 186.18164 * 12 2 1 14 14 C 1.52574 * 108.51267 * 68.64241 * 12 2 1 15 15 C 1.50885 * 109.36047 * 153.73224 * 14 12 2 16 16 C 1.53945 * 110.09115 * 91.88586 * 15 14 12 17 17 N 1.47577 * 112.12893 * 319.44426 * 16 15 14 18 18 C 1.36934 * 118.62573 * 137.86987 * 17 16 15 19 19 H 1.08005 * 120.00177 * 207.82199 * 18 17 16 20 20 C 1.38817 * 119.99751 * 27.83419 * 18 17 16 21 21 N 1.31618 * 119.99950 * 16.66987 * 20 18 17 22 22 Si 1.86800 * 119.99877 * 196.67263 * 20 18 17 23 23 H 1.48501 * 109.46990 * 89.99495 * 22 20 18 24 24 H 1.48493 * 109.47274 * 209.99550 * 22 20 18 25 25 H 1.48502 * 109.46845 * 329.99801 * 22 20 18 26 26 C 1.44585 * 122.72979 * 317.83221 * 17 16 15 27 27 C 1.47093 * 108.51314 * 303.87667 * 12 2 1 28 28 H 1.08999 * 109.46887 * 264.85894 * 1 2 3 29 29 H 1.09002 * 109.47444 * 24.85714 * 1 2 3 30 30 H 1.08994 * 109.47153 * 144.86377 * 1 2 3 31 31 H 1.09003 * 109.54719 * 296.75215 * 7 5 3 32 32 H 1.09002 * 109.54656 * 56.93053 * 7 5 3 33 33 H 1.09002 * 109.52288 * 62.92402 * 8 7 5 34 34 H 1.08999 * 109.52483 * 183.04945 * 8 7 5 35 35 H 1.09005 * 109.48046 * 177.59526 * 9 8 7 36 36 H 1.09003 * 109.48252 * 297.61148 * 9 8 7 37 37 H 1.09005 * 109.42047 * 301.11052 * 11 10 9 38 38 H 1.09004 * 109.53844 * 181.07329 * 11 10 9 39 39 H 1.09002 * 109.48986 * 273.69885 * 14 12 2 40 40 H 1.09000 * 109.48955 * 33.76317 * 14 12 2 41 41 H 1.08992 * 109.36322 * 212.07639 * 15 14 12 42 42 H 1.09000 * 109.36509 * 331.82021 * 15 14 12 43 43 H 1.09004 * 108.94877 * 80.12434 * 16 15 14 44 44 H 1.09008 * 108.94246 * 198.83654 * 16 15 14 45 45 H 0.96999 * 119.99812 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.44835 * 330.73306 * 26 17 16 47 47 H 1.08997 * 109.44581 * 210.77903 * 26 17 16 48 48 H 1.08999 * 109.33128 * 63.79421 * 27 12 2 49 49 H 1.08994 * 109.32794 * 304.31414 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5350 2.2161 0.0783 5 6 3.6428 1.1690 -0.0973 6 1 3.9607 0.4354 -0.8380 7 6 4.1270 2.5610 -0.5149 8 6 5.6586 2.5720 -0.5347 9 6 6.1820 2.1644 0.8449 10 8 5.6695 0.8747 1.1855 11 6 4.2440 0.8141 1.2651 12 6 2.1975 -1.2687 -0.0006 13 1 3.2603 -1.0534 0.1109 14 6 1.9834 -1.9511 -1.3483 15 6 3.1544 -2.8560 -1.6424 16 6 2.8669 -4.2776 -1.1263 17 7 2.1945 -4.2666 0.1874 18 6 1.1634 -5.1413 0.4039 19 1 0.3840 -4.8934 1.1092 20 6 1.1202 -6.3468 -0.2831 21 7 2.2006 -6.8029 -0.8806 22 14 -0.4714 -7.3217 -0.3594 23 1 -1.2534 -6.9004 -1.5494 24 1 -0.1604 -8.7703 -0.4589 25 1 -1.2659 -7.0693 0.8696 26 6 2.5797 -3.3713 1.2553 27 6 1.7577 -2.0624 1.1571 28 1 -0.3633 -0.0921 1.0235 29 1 -0.3634 0.9325 -0.4320 30 1 -0.3633 -0.8404 -0.5914 31 1 3.7477 2.7959 -1.5095 32 1 3.7649 3.3021 0.1978 33 1 6.0182 1.8665 -1.2837 34 1 6.0125 3.5738 -0.7783 35 1 7.2712 2.1292 0.8246 36 1 5.8557 2.8929 1.5873 37 1 3.8923 1.5241 2.0137 38 1 3.9370 -0.1932 1.5467 39 1 1.0673 -2.5408 -1.3159 40 1 1.9024 -1.1955 -2.1297 41 1 3.3239 -2.8895 -2.7186 42 1 4.0448 -2.4671 -1.1482 43 1 2.2305 -4.7933 -1.8454 44 1 3.8090 -4.8186 -1.0361 45 1 2.1702 -7.6451 -1.3609 46 1 3.6415 -3.1403 1.1700 47 1 2.3881 -3.8490 2.2161 48 1 0.7014 -2.3072 1.0464 49 1 1.8969 -1.4799 2.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948226708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:41 Heat of formation + Delta-G solvation = -63.381985 kcal Electronic energy + Delta-G solvation = -28216.783180 eV Core-core repulsion = 24565.292283 eV Total energy + Delta-G solvation = -3651.490897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75571 -38.88298 -37.88119 -35.37402 -33.76508 -32.67848 -31.71832 -31.70852 -30.16862 -27.27985 -26.07394 -25.14362 -24.50326 -23.84131 -23.20845 -20.79807 -20.23478 -19.32436 -18.83082 -17.30147 -16.74775 -16.40171 -16.28910 -15.65249 -15.28429 -15.11080 -14.57794 -14.42635 -14.03292 -13.89221 -13.64222 -13.48520 -13.13092 -12.92642 -12.81040 -12.59912 -12.50840 -12.17250 -11.86123 -11.72188 -11.41793 -11.28906 -11.24943 -11.10772 -10.87298 -10.62518 -10.61228 -10.53575 -10.25864 -10.17294 -9.98608 -9.80865 -9.78226 -9.65256 -9.47336 -8.50635 -8.42537 -6.69521 -5.81706 -3.26668 2.63592 3.08955 3.34778 3.42773 3.43132 3.69125 4.40336 4.47083 4.54503 4.67090 4.72820 4.87253 4.93058 5.04352 5.20451 5.29503 5.38284 5.41273 5.45199 5.48878 5.52388 5.60858 5.62403 5.65266 5.71176 5.76169 5.88484 5.92263 5.93425 5.95131 6.10066 6.14576 6.23023 6.37517 6.43737 6.53893 6.59664 6.72127 6.76570 6.84658 6.95131 6.98432 7.37387 7.52918 7.65451 7.79972 8.23134 8.44246 9.20732 9.87029 10.32592 11.25459 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.003944 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.061558 B = 7097.819393 C = 7689.151175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.608 5.608 3 C 0.518 3.482 4 O -0.551 6.551 5 C -0.144 4.144 6 H 0.104 0.896 7 C -0.102 4.102 8 C -0.156 4.156 9 C 0.057 3.943 10 O -0.373 6.373 11 C 0.071 3.929 12 C 0.146 3.854 13 H 0.082 0.918 14 C -0.114 4.114 15 C -0.141 4.141 16 C 0.178 3.822 17 N -0.588 5.588 18 C -0.262 4.262 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.162 3.838 27 C -0.158 4.158 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.253 0.747 46 H 0.035 0.965 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 16.101 0.691 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.340 5.340 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.166 4.166 6 H 0.122 0.878 7 C -0.140 4.140 8 C -0.194 4.194 9 C -0.020 4.020 10 O -0.291 6.291 11 C -0.006 4.006 12 C 0.045 3.955 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.309 5.309 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.728 3.272 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.033 3.967 27 C -0.199 4.199 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.998 16.311 0.672 17.073 hybrid contribution -1.128 -0.443 -0.292 1.246 sum 3.870 15.868 0.380 16.338 Atomic orbital electron populations 1.21565 0.79594 1.02820 1.01731 1.48368 1.07177 1.06434 1.72036 1.20402 0.89479 0.83413 0.76110 1.90650 1.70312 1.31403 1.50621 1.21996 0.92653 1.00741 1.01176 0.87782 1.21415 0.94719 0.95104 1.02782 1.22220 0.95962 1.02508 0.98680 1.22632 0.99131 0.85279 0.94976 1.87997 1.19921 1.30996 1.90224 1.22603 0.81113 1.03088 0.93834 1.20455 0.95970 0.82216 0.96892 0.89977 1.21340 1.01444 0.98056 0.94430 1.21997 0.96647 0.99345 1.00103 1.20993 0.96966 0.89812 0.86920 1.43633 1.39019 1.39951 1.08301 1.19175 0.99951 0.96095 1.23961 0.91779 1.25040 0.96690 0.96178 1.01165 1.70070 1.25818 1.20537 1.37991 0.86363 0.83589 0.79242 0.77989 1.21498 1.21799 1.20445 1.20579 0.94786 0.88828 0.92505 1.21919 1.03288 0.99194 0.95545 0.92856 0.91026 0.90950 0.91128 0.90704 0.90793 0.90543 0.88696 0.93116 0.92597 0.87705 0.90132 0.93331 0.92557 0.93419 0.91103 0.95534 0.93659 0.94708 0.93037 0.91244 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 9.31 59.85 0.56 1.72 16 2 N -0.61 -8.74 2.59 -177.48 -0.46 -9.20 16 3 C 0.52 7.62 6.87 -10.99 -0.08 7.55 16 4 O -0.55 -9.56 15.50 5.55 0.09 -9.48 16 5 C -0.14 -1.77 1.85 -91.64 -0.17 -1.94 16 6 H 0.10 1.29 7.11 -51.93 -0.37 0.92 16 7 C -0.10 -1.12 4.81 -26.55 -0.13 -1.25 16 8 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 9 C 0.06 0.52 6.84 37.20 0.25 0.78 16 10 O -0.37 -4.54 10.76 -35.23 -0.38 -4.92 16 11 C 0.07 0.85 5.79 37.20 0.22 1.06 16 12 C 0.15 2.17 1.28 -70.99 -0.09 2.08 16 13 H 0.08 1.17 3.41 -51.93 -0.18 0.99 16 14 C -0.11 -1.85 4.48 -28.01 -0.13 -1.97 16 15 C -0.14 -2.44 5.71 -27.30 -0.16 -2.59 16 16 C 0.18 3.95 4.67 -2.96 -0.01 3.93 16 17 N -0.59 -13.43 2.26 -172.10 -0.39 -13.82 16 18 C -0.26 -6.73 9.41 -15.06 -0.14 -6.87 16 19 H 0.06 1.64 7.88 -52.48 -0.41 1.22 16 20 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 21 N -0.90 -25.11 11.18 55.49 0.62 -24.49 16 22 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 C 0.16 3.09 5.66 -4.08 -0.02 3.07 16 27 C -0.16 -2.54 4.82 -28.58 -0.14 -2.68 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.98 7.33 -51.93 -0.38 0.60 16 30 H 0.07 0.97 7.50 -51.93 -0.39 0.58 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.88 7.81 -51.93 -0.41 0.47 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 1.28 6.30 -51.93 -0.33 0.96 16 39 H 0.08 1.51 7.34 -51.93 -0.38 1.12 16 40 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 43 H 0.07 1.77 6.46 -51.93 -0.34 1.44 16 44 H 0.03 0.65 8.02 -51.92 -0.42 0.23 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 47 H 0.05 1.01 7.99 -51.93 -0.41 0.60 16 48 H 0.07 1.22 7.54 -51.93 -0.39 0.83 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -29.19 365.37 -8.89 -38.08 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.56 Total: 0.86 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.28 Total: 1.48 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.23 Total: -47.51 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.29 Total: -14.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.19 -8.89 -38.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948226708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.304 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds