Wall clock time and date at job start Tue Mar 31 2020 10:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00008 * 2 1 4 4 O 1.21286 * 120.00029 * 4.27292 * 3 2 1 5 5 C 1.50698 * 120.00179 * 184.27471 * 3 2 1 6 6 H 1.08998 * 109.52206 * 42.25697 * 5 3 2 7 7 C 1.53179 * 109.52148 * 162.37867 * 5 3 2 8 8 C 1.53178 * 109.03595 * 176.88788 * 7 5 3 9 9 C 1.53089 * 109.16183 * 303.02228 * 8 7 5 10 10 O 1.42899 * 109.41873 * 57.60498 * 9 8 7 11 11 C 1.42908 * 114.15715 * 298.87959 * 10 9 8 12 12 C 1.46497 * 119.99970 * 180.02562 * 2 1 3 13 13 H 1.09004 * 108.44548 * 186.18164 * 12 2 1 14 14 C 1.52574 * 108.51267 * 68.64241 * 12 2 1 15 15 C 1.50885 * 109.36047 * 153.73224 * 14 12 2 16 16 C 1.53945 * 110.09115 * 91.88586 * 15 14 12 17 17 N 1.47577 * 112.12893 * 319.44426 * 16 15 14 18 18 C 1.36934 * 118.62573 * 137.86987 * 17 16 15 19 19 H 1.08005 * 120.00177 * 207.82199 * 18 17 16 20 20 C 1.38817 * 119.99751 * 27.83419 * 18 17 16 21 21 N 1.31618 * 119.99950 * 16.66987 * 20 18 17 22 22 Si 1.86800 * 119.99877 * 196.67263 * 20 18 17 23 23 H 1.48501 * 109.46990 * 89.99495 * 22 20 18 24 24 H 1.48493 * 109.47274 * 209.99550 * 22 20 18 25 25 H 1.48502 * 109.46845 * 329.99801 * 22 20 18 26 26 C 1.44585 * 122.72979 * 317.83221 * 17 16 15 27 27 C 1.47093 * 108.51314 * 303.87667 * 12 2 1 28 28 H 1.08999 * 109.46887 * 264.85894 * 1 2 3 29 29 H 1.09002 * 109.47444 * 24.85714 * 1 2 3 30 30 H 1.08994 * 109.47153 * 144.86377 * 1 2 3 31 31 H 1.09003 * 109.54719 * 296.75215 * 7 5 3 32 32 H 1.09002 * 109.54656 * 56.93053 * 7 5 3 33 33 H 1.09002 * 109.52288 * 62.92402 * 8 7 5 34 34 H 1.08999 * 109.52483 * 183.04945 * 8 7 5 35 35 H 1.09005 * 109.48046 * 177.59526 * 9 8 7 36 36 H 1.09003 * 109.48252 * 297.61148 * 9 8 7 37 37 H 1.09005 * 109.42047 * 301.11052 * 11 10 9 38 38 H 1.09004 * 109.53844 * 181.07329 * 11 10 9 39 39 H 1.09002 * 109.48986 * 273.69885 * 14 12 2 40 40 H 1.09000 * 109.48955 * 33.76317 * 14 12 2 41 41 H 1.08992 * 109.36322 * 212.07639 * 15 14 12 42 42 H 1.09000 * 109.36509 * 331.82021 * 15 14 12 43 43 H 1.09004 * 108.94877 * 80.12434 * 16 15 14 44 44 H 1.09008 * 108.94246 * 198.83654 * 16 15 14 45 45 H 0.96999 * 119.99812 * 180.02562 * 21 20 18 46 46 H 1.08995 * 109.44835 * 330.73306 * 26 17 16 47 47 H 1.08997 * 109.44581 * 210.77903 * 26 17 16 48 48 H 1.08999 * 109.33128 * 63.79421 * 27 12 2 49 49 H 1.08994 * 109.32794 * 304.31414 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5350 2.2161 0.0783 5 6 3.6428 1.1690 -0.0973 6 1 3.9607 0.4354 -0.8380 7 6 4.1270 2.5610 -0.5149 8 6 5.6586 2.5720 -0.5347 9 6 6.1820 2.1644 0.8449 10 8 5.6695 0.8747 1.1855 11 6 4.2440 0.8141 1.2651 12 6 2.1975 -1.2687 -0.0006 13 1 3.2603 -1.0534 0.1109 14 6 1.9834 -1.9511 -1.3483 15 6 3.1544 -2.8560 -1.6424 16 6 2.8669 -4.2776 -1.1263 17 7 2.1945 -4.2666 0.1874 18 6 1.1634 -5.1413 0.4039 19 1 0.3840 -4.8934 1.1092 20 6 1.1202 -6.3468 -0.2831 21 7 2.2006 -6.8029 -0.8806 22 14 -0.4714 -7.3217 -0.3594 23 1 -1.2534 -6.9004 -1.5494 24 1 -0.1604 -8.7703 -0.4589 25 1 -1.2659 -7.0693 0.8696 26 6 2.5797 -3.3713 1.2553 27 6 1.7577 -2.0624 1.1571 28 1 -0.3633 -0.0921 1.0235 29 1 -0.3634 0.9325 -0.4320 30 1 -0.3633 -0.8404 -0.5914 31 1 3.7477 2.7959 -1.5095 32 1 3.7649 3.3021 0.1978 33 1 6.0182 1.8665 -1.2837 34 1 6.0125 3.5738 -0.7783 35 1 7.2712 2.1292 0.8246 36 1 5.8557 2.8929 1.5873 37 1 3.8923 1.5241 2.0137 38 1 3.9370 -0.1932 1.5467 39 1 1.0673 -2.5408 -1.3159 40 1 1.9024 -1.1955 -2.1297 41 1 3.3239 -2.8895 -2.7186 42 1 4.0448 -2.4671 -1.1482 43 1 2.2305 -4.7933 -1.8454 44 1 3.8090 -4.8186 -1.0361 45 1 2.1702 -7.6451 -1.3609 46 1 3.6415 -3.1403 1.1700 47 1 2.3881 -3.8490 2.2161 48 1 0.7014 -2.3072 1.0464 49 1 1.8969 -1.4799 2.0677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948226708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:40 Heat of formation + Delta-G solvation = -79.461997 kcal Electronic energy + Delta-G solvation = -28217.480461 eV Core-core repulsion = 24565.292283 eV Total energy + Delta-G solvation = -3652.188178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87146 -39.92318 -39.20311 -36.89319 -34.66235 -34.30612 -33.29785 -32.55365 -31.81315 -28.40839 -27.74953 -26.03918 -25.89126 -25.12848 -24.62981 -21.76949 -21.46479 -20.99851 -19.96498 -18.59646 -18.28302 -17.46833 -17.32026 -16.87264 -16.66146 -16.28436 -15.83697 -15.63557 -15.48211 -15.26510 -15.08365 -14.64461 -14.37915 -14.11621 -14.04611 -13.85518 -13.60000 -13.52966 -13.15078 -13.00540 -12.88828 -12.72455 -12.60167 -12.35359 -12.16150 -12.05958 -11.90761 -11.90282 -11.67479 -11.51780 -11.46327 -11.33068 -11.32199 -10.87394 -10.48349 -10.41455 -9.70635 -8.59817 -7.81925 -5.28155 1.47170 1.48955 1.49812 1.56866 1.95458 2.54270 2.85293 3.31547 3.41363 3.62602 3.65682 3.75997 3.77483 3.97265 4.08279 4.10374 4.17713 4.27236 4.43675 4.44390 4.46168 4.48457 4.57852 4.59912 4.65741 4.73126 4.76300 4.82589 4.87938 4.90280 4.98410 5.02435 5.04728 5.10790 5.13082 5.19257 5.25138 5.30633 5.34529 5.42937 5.61116 5.63670 5.73500 5.84571 6.15607 6.36008 6.45765 7.07509 7.23723 8.00308 8.38797 9.22681 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.003944 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.061558 B = 7097.819393 C = 7689.151175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.519 3.481 4 O -0.578 6.578 5 C -0.140 4.140 6 H 0.108 0.892 7 C -0.101 4.101 8 C -0.149 4.149 9 C 0.049 3.951 10 O -0.389 6.389 11 C 0.075 3.925 12 C 0.154 3.846 13 H 0.096 0.904 14 C -0.106 4.106 15 C -0.128 4.128 16 C 0.188 3.812 17 N -0.600 5.600 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.955 3.045 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.158 3.842 27 C -0.142 4.142 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.035 0.965 44 H -0.004 1.004 45 H 0.247 0.753 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.054 0.946 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 17.968 0.942 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.338 5.338 3 C 0.308 3.692 4 O -0.459 6.459 5 C -0.161 4.161 6 H 0.126 0.874 7 C -0.139 4.139 8 C -0.186 4.186 9 C -0.027 4.027 10 O -0.307 6.307 11 C -0.003 4.003 12 C 0.052 3.948 13 H 0.114 0.886 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.063 3.937 17 N -0.322 5.322 18 C -0.391 4.391 19 H 0.081 0.919 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.784 3.216 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.195 1.195 26 C 0.031 3.969 27 C -0.183 4.183 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.599 18.208 0.944 19.073 hybrid contribution -1.293 -0.970 -0.323 1.648 sum 4.306 17.237 0.621 17.778 Atomic orbital electron populations 1.21598 0.79327 1.02750 1.02115 1.48345 1.07431 1.06190 1.71813 1.20804 0.90426 0.82819 0.75197 1.90641 1.71113 1.32261 1.51871 1.22010 0.90732 1.01784 1.01623 0.87418 1.21418 0.96332 0.93939 1.02242 1.22193 0.94119 1.03830 0.98505 1.22873 1.00220 0.84311 0.95305 1.87978 1.19648 1.32707 1.90401 1.22525 0.81395 1.02892 0.93471 1.20289 0.96739 0.82103 0.95624 0.88577 1.21227 0.99569 0.97842 0.95777 1.21827 0.97758 0.96135 1.00983 1.20753 0.94442 0.92366 0.86137 1.43814 1.38652 1.40192 1.09545 1.19442 1.00443 0.96219 1.23000 0.91855 1.25667 0.99044 0.97387 1.01784 1.70212 1.27436 1.20762 1.39377 0.85456 0.80631 0.77458 0.78038 1.21530 1.22550 1.19522 1.20717 0.96028 0.89277 0.90927 1.21675 1.01620 0.97827 0.97140 0.92302 0.91168 0.90901 0.91423 0.91602 0.90684 0.88439 0.86811 0.92438 0.92543 0.88043 0.92780 0.91703 0.91091 0.91592 0.94644 0.98569 0.94357 0.93391 0.93906 0.92723 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 9.31 127.77 1.19 3.37 16 2 N -0.61 -16.22 2.59 -833.80 -2.16 -18.38 16 3 C 0.52 14.23 6.87 87.66 0.60 14.83 16 4 O -0.58 -19.22 15.50 -3.05 -0.05 -19.27 16 5 C -0.14 -3.11 1.85 -11.45 -0.02 -3.13 16 6 H 0.11 2.34 7.11 -2.39 -0.02 2.32 16 7 C -0.10 -2.00 4.81 30.71 0.15 -1.85 16 8 C -0.15 -2.18 6.14 30.68 0.19 -1.99 16 9 C 0.05 0.76 6.84 72.01 0.49 1.25 16 10 O -0.39 -8.44 10.76 -148.98 -1.60 -10.04 16 11 C 0.07 1.61 5.79 72.01 0.42 2.02 16 12 C 0.15 4.24 1.28 43.01 0.06 4.30 16 13 H 0.10 2.44 3.41 -2.39 -0.01 2.43 16 14 C -0.11 -3.23 4.48 29.77 0.13 -3.10 16 15 C -0.13 -4.21 5.71 30.23 0.17 -4.04 16 16 C 0.19 8.44 4.67 86.49 0.40 8.85 16 17 N -0.60 -27.50 2.26 -698.40 -1.58 -29.08 16 18 C -0.26 -13.50 9.41 84.04 0.79 -12.70 16 19 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 20 C -0.04 -2.32 4.83 84.86 0.41 -1.91 16 21 N -0.93 -53.46 11.18 21.65 0.24 -53.21 16 22 Si 0.95 43.86 29.59 68.60 2.03 45.89 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 C 0.16 5.87 5.66 87.38 0.49 6.36 16 27 C -0.14 -4.30 4.82 29.40 0.14 -4.16 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.84 7.33 -2.39 -0.02 1.82 16 30 H 0.07 1.87 7.50 -2.39 -0.02 1.85 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.42 7.81 -2.39 -0.02 1.40 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 2.21 6.30 -2.39 -0.02 2.20 16 39 H 0.05 1.98 7.34 -2.39 -0.02 1.96 16 40 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 1.95 7.31 -2.39 -0.02 1.94 16 43 H 0.03 1.82 6.46 -2.39 -0.02 1.81 16 44 H 0.00 -0.19 8.02 -2.38 -0.02 -0.21 16 45 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.05 1.65 8.06 -2.39 -0.02 1.64 16 47 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 48 H 0.05 1.85 7.54 -2.39 -0.02 1.83 16 49 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -63.31 365.37 3.41 -59.90 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.91 Total: 16.10 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.62 Total: 8.10 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.50 Total: -100.68 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.65 Total: -29.31 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -63.31 3.41 -59.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948226708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.565 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds