Wall clock time and date at job start Tue Mar 31 2020 10:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00361 * 2 1 4 4 C 1.52998 * 109.47350 * 270.00401 * 3 2 1 5 5 C 1.52994 * 109.47209 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47519 * 59.99671 * 5 4 3 7 7 C 1.50694 * 109.47142 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99947 * 85.31244 * 7 6 5 9 9 N 1.34772 * 120.00266 * 265.30756 * 7 6 5 10 10 C 1.46924 * 120.63010 * 5.42054 * 9 7 6 11 11 C 1.53188 * 108.78138 * 126.36710 * 10 9 7 12 12 C 1.53046 * 109.31270 * 54.63353 * 11 10 9 13 13 C 1.53043 * 109.53614 * 298.63907 * 12 11 10 14 14 H 1.09006 * 109.49732 * 301.37909 * 13 12 11 15 15 N 1.46504 * 109.49523 * 181.31483 * 13 12 11 16 16 C 1.36938 * 119.99835 * 85.00057 * 15 13 12 17 17 H 1.07998 * 119.99997 * 0.02562 * 16 15 13 18 18 C 1.38806 * 119.99985 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00111 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99993 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47033 * 89.99785 * 20 18 16 22 22 H 1.48500 * 109.47353 * 209.99851 * 20 18 16 23 23 H 1.48500 * 109.47136 * 329.99984 * 20 18 16 24 24 C 1.46927 * 120.63274 * 185.13630 * 9 7 6 25 25 C 1.53006 * 109.47042 * 300.00165 * 6 5 4 26 26 C 1.53002 * 109.46906 * 150.00131 * 3 2 1 27 27 H 1.08997 * 109.47713 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46843 * 299.99666 * 1 2 3 29 29 H 1.09005 * 109.47525 * 59.99411 * 1 2 3 30 30 H 1.08997 * 109.46715 * 30.00179 * 3 2 1 31 31 H 1.09003 * 109.46657 * 299.99866 * 4 3 2 32 32 H 1.08996 * 109.47277 * 59.99342 * 4 3 2 33 33 H 1.09011 * 109.46884 * 299.99708 * 5 4 3 34 34 H 1.08999 * 109.47268 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.46708 * 60.00280 * 6 5 4 36 36 H 1.09004 * 109.58871 * 246.15461 * 10 9 7 37 37 H 1.09008 * 109.58522 * 6.43334 * 10 9 7 38 38 H 1.08994 * 109.50296 * 174.58839 * 11 10 9 39 39 H 1.09004 * 109.49143 * 294.65318 * 11 10 9 40 40 H 1.08995 * 109.45792 * 58.65458 * 12 11 10 41 41 H 1.08994 * 109.45943 * 178.62091 * 12 11 10 42 42 H 0.96995 * 119.99828 * 264.99590 * 15 13 12 43 43 H 0.97003 * 119.99823 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.58694 * 353.42179 * 24 9 7 45 45 H 1.09001 * 109.58858 * 113.84714 * 24 9 7 46 46 H 1.08997 * 109.47247 * 300.00134 * 25 6 5 47 47 H 1.08997 * 109.46980 * 179.97438 * 25 6 5 48 48 H 1.08999 * 109.47232 * 300.00286 * 26 3 2 49 49 H 1.08995 * 109.46893 * 60.00421 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2177 1.7714 -1.4425 5 6 2.8406 3.1687 -1.4424 6 6 4.1894 3.1259 -0.7214 7 6 4.8026 4.5025 -0.7208 8 8 4.5035 5.2993 0.1433 9 7 5.6835 4.8482 -1.6804 10 6 5.9667 3.9390 -2.7993 11 6 5.7538 4.6946 -4.1148 12 6 6.6021 5.9685 -4.1098 13 6 6.1610 6.8726 -2.9565 14 1 5.1046 7.1168 -3.0692 15 7 6.9522 8.1055 -2.9716 16 6 6.5709 9.1540 -3.7655 17 1 5.6867 9.0723 -4.3802 18 6 7.3203 10.3224 -3.7794 19 7 6.9541 11.3300 -4.5428 20 14 8.8493 10.4640 -2.7157 21 1 10.0306 9.9912 -3.4814 22 1 9.0494 11.8820 -2.3226 23 1 8.6836 9.6313 -1.4973 24 6 6.3743 6.1440 -1.6309 25 6 3.9819 2.6600 0.7212 26 6 3.3590 1.2630 0.7212 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.3450 1.9993 0.5139 31 1 2.8829 1.0774 -1.9563 32 1 1.2569 1.8014 -1.9563 33 1 2.1757 3.8630 -0.9284 34 1 2.9888 3.5005 -2.4701 35 1 4.8542 2.4318 -1.2354 36 1 6.9993 3.5952 -2.7385 37 1 5.2933 3.0830 -2.7540 38 1 6.0526 4.0618 -4.9504 39 1 4.7010 4.9584 -4.2164 40 1 7.6521 5.7049 -3.9835 41 1 6.4712 6.4955 -5.0549 42 1 7.7461 8.1790 -2.4192 43 1 7.4781 12.1463 -4.5528 44 1 5.9682 6.7437 -0.8164 45 1 7.4408 5.9837 -1.4728 46 1 3.3170 3.3541 1.2352 47 1 4.9429 2.6290 1.2347 48 1 3.2112 0.9311 1.7489 49 1 4.0241 0.5692 0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000027822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:48 Heat of formation + Delta-G solvation = -84.753331 kcal Electronic energy + Delta-G solvation = -26836.218701 eV Core-core repulsion = 23183.801073 eV Total energy + Delta-G solvation = -3652.417628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63309 -39.11558 -37.56983 -36.27640 -34.65130 -32.26359 -31.48393 -31.16868 -30.63308 -28.78550 -26.90768 -25.33558 -23.92861 -23.04712 -22.69300 -21.96645 -20.57759 -19.97413 -18.77245 -17.65306 -17.22964 -16.95743 -16.24810 -15.57002 -15.47917 -15.16933 -14.68018 -14.35403 -14.19691 -14.07284 -13.81346 -13.68443 -13.50196 -13.27152 -12.92415 -12.76964 -12.60524 -12.53965 -12.29567 -12.23794 -11.61779 -11.47649 -11.38676 -11.22458 -11.09663 -11.01705 -10.87059 -10.70295 -10.60827 -10.52802 -10.39342 -10.09862 -9.77905 -9.62449 -9.53093 -8.95042 -8.47550 -7.31024 -5.78840 -3.15460 2.66615 3.02545 3.37045 3.38737 3.40019 3.45098 4.31652 4.36928 4.41589 4.57615 4.73548 4.78388 4.82071 4.90418 5.00640 5.01584 5.05154 5.10341 5.11880 5.18999 5.21588 5.30280 5.35804 5.42182 5.47035 5.49019 5.51751 5.64610 5.64912 5.70548 5.73124 5.83011 5.85010 5.90347 5.97527 6.02901 6.07896 6.11501 6.29790 6.44076 6.59477 6.78353 6.87185 6.93263 7.51172 7.95955 8.26152 8.39544 9.17145 9.89569 10.08457 11.39241 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.002768 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.308614 B =10111.909255 C =10334.581933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.087 3.913 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.108 4.108 7 C 0.517 3.483 8 O -0.541 6.541 9 N -0.605 5.605 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.137 4.137 13 C 0.173 3.827 14 H 0.058 0.942 15 N -0.745 5.745 16 C -0.243 4.243 17 H 0.090 0.910 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.102 3.898 25 C -0.100 4.100 26 C -0.113 4.113 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 -25.498 7.156 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 C -0.174 4.174 5 C -0.144 4.144 6 C -0.129 4.129 7 C 0.305 3.695 8 O -0.417 6.417 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.178 4.178 13 C 0.063 3.937 14 H 0.076 0.924 15 N -0.388 5.388 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.020 4.020 25 C -0.138 4.138 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.753 -25.044 7.467 27.560 hybrid contribution 1.010 0.502 0.446 1.212 sum -7.744 -24.542 7.913 26.924 Atomic orbital electron populations 1.22780 0.81219 1.02601 1.00019 1.87896 1.19539 1.28069 1.95095 1.22212 0.95082 0.84259 0.95548 1.22004 1.01591 0.96623 0.97219 1.21436 0.94789 0.97204 1.00981 1.21410 0.98155 0.94505 0.98845 1.20573 0.78526 0.89279 0.81108 1.90694 1.60682 1.52567 1.37802 1.48113 1.42705 1.18700 1.24306 1.21842 1.01325 0.92355 0.86306 1.21925 1.01347 0.97910 0.95982 1.22240 0.98778 0.94889 1.01875 1.20361 0.96147 0.86136 0.91101 0.92424 1.42676 1.30245 1.12953 1.52911 1.19026 1.09411 0.91273 1.17563 0.89194 1.24669 0.98869 0.96076 0.99427 1.69699 1.40783 1.05134 1.42405 0.86551 0.84244 0.77041 0.80721 1.21076 1.21694 1.20244 1.21902 0.96209 0.83432 1.00507 1.21363 1.01979 0.95821 0.94633 1.21571 0.95210 0.97321 1.00985 0.89761 0.94061 0.94037 0.91949 0.90798 0.91418 0.90865 0.90794 0.88856 0.91453 0.89913 0.91144 0.91690 0.92568 0.91060 0.80604 0.93016 0.88881 0.91964 0.90385 0.90981 0.90946 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.39 -3.51 10.35 -35.23 -0.36 -3.88 16 3 C 0.09 0.71 2.61 -26.73 -0.07 0.64 16 4 C -0.14 -1.05 5.54 -26.74 -0.15 -1.20 16 5 C -0.11 -0.96 5.10 -26.73 -0.14 -1.09 16 6 C -0.11 -1.07 1.72 -91.77 -0.16 -1.22 16 7 C 0.52 7.31 6.69 -10.99 -0.07 7.23 16 8 O -0.54 -9.83 15.68 5.55 0.09 -9.74 16 9 N -0.61 -8.36 2.98 -173.03 -0.52 -8.88 16 10 C 0.10 1.10 6.16 -3.71 -0.02 1.08 16 11 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 12 C -0.14 -2.22 5.47 -26.68 -0.15 -2.37 16 13 C 0.17 3.30 2.91 -68.03 -0.20 3.10 16 14 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 15 N -0.75 -17.50 4.93 -53.52 -0.26 -17.77 16 16 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 20 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 24 C 0.10 1.72 5.88 -3.93 -0.02 1.70 16 25 C -0.10 -0.94 4.86 -26.75 -0.13 -1.07 16 26 C -0.11 -0.91 5.57 -26.75 -0.15 -1.06 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 35 H 0.09 0.76 6.19 -51.93 -0.32 0.43 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.66 5.42 -51.92 -0.28 0.38 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.36 8.33 5.66 -40.82 -0.23 8.10 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.09 1.78 7.00 -51.93 -0.36 1.42 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -33.32 375.60 -8.66 -41.97 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -8.75 Total: 5.34 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.58 Total: -1.62 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.00 Total: -55.14 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.28 Total: -13.61 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.32 -8.66 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000027822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.779 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds