Wall clock time and date at job start Tue Mar 31 2020 09:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00217 * 2 1 4 4 H 1.08994 * 110.53873 * 332.62163 * 3 2 1 5 5 C 1.54967 * 110.52706 * 95.24603 * 3 2 1 6 6 C 1.54888 * 102.77633 * 156.56681 * 5 3 2 7 7 C 1.54259 * 104.19717 * 322.08437 * 6 5 3 8 8 C 1.53877 * 106.59909 * 23.61002 * 7 6 5 9 9 H 1.08997 * 110.03092 * 240.66630 * 8 7 6 10 10 C 1.50702 * 110.02995 * 119.28527 * 8 7 6 11 11 O 1.21279 * 119.99499 * 242.08870 * 10 8 7 12 12 N 1.34769 * 120.00307 * 62.09535 * 10 8 7 13 13 C 1.46508 * 120.00016 * 359.97438 * 12 10 8 14 14 C 1.46498 * 120.00253 * 180.02562 * 12 10 8 15 15 C 1.53043 * 109.46286 * 119.99737 * 14 12 10 16 16 C 1.53197 * 109.31048 * 181.38662 * 15 14 12 17 17 N 1.46930 * 108.77229 * 305.36329 * 16 15 14 18 18 C 1.36942 * 120.62512 * 233.58453 * 17 16 15 19 19 H 1.08000 * 119.99822 * 151.83921 * 18 17 16 20 20 C 1.38804 * 120.00133 * 331.83769 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.07682 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.07636 * 20 18 17 23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18 25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18 26 26 C 1.46921 * 118.74249 * 53.86261 * 17 16 15 27 27 C 1.53047 * 109.45712 * 240.06671 * 14 12 10 28 28 H 1.09000 * 109.46410 * 299.99750 * 1 2 3 29 29 H 1.09003 * 109.47189 * 59.99174 * 1 2 3 30 30 H 1.08996 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09009 * 110.71797 * 38.25114 * 5 3 2 32 32 H 1.09004 * 110.92436 * 274.98020 * 5 3 2 33 33 H 1.09006 * 110.48211 * 203.40610 * 6 5 3 34 34 H 1.08998 * 110.48296 * 80.76867 * 6 5 3 35 35 H 1.09000 * 110.03194 * 264.32381 * 7 6 5 36 36 H 1.08997 * 110.03185 * 142.89712 * 7 6 5 37 37 H 1.09003 * 109.46895 * 270.00655 * 13 12 10 38 38 H 1.09001 * 109.46953 * 29.99923 * 13 12 10 39 39 H 1.08991 * 109.46834 * 150.00488 * 13 12 10 40 40 H 1.08998 * 109.45017 * 0.02562 * 14 12 10 41 41 H 1.08991 * 109.49664 * 61.43601 * 15 14 12 42 42 H 1.08996 * 109.51804 * 301.35118 * 15 14 12 43 43 H 1.08994 * 109.58410 * 185.57859 * 16 15 14 44 44 H 1.08997 * 109.70673 * 65.21813 * 16 15 14 45 45 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58770 * 65.92424 * 26 17 16 47 47 H 1.08999 * 109.58848 * 186.34837 * 26 17 16 48 48 H 1.09002 * 109.49337 * 298.56187 * 27 14 12 49 49 H 1.09000 * 109.49911 * 58.65893 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 -0.4694 5 6 2.3526 1.7479 1.4452 6 6 3.4621 2.8061 1.2258 7 6 4.2960 2.2431 0.0566 8 6 3.3731 1.2896 -0.7226 9 1 3.7872 0.2814 -0.7166 10 6 3.2111 1.7725 -2.1409 11 8 2.1149 2.0889 -2.5522 12 7 4.2842 1.8525 -2.9523 13 6 5.6084 1.4706 -2.4553 14 6 4.1268 2.3224 -4.3309 15 6 4.9781 3.5765 -4.5426 16 6 4.7841 4.0847 -5.9747 17 7 5.0796 2.9900 -6.9090 18 6 5.9874 3.1614 -7.9198 19 1 6.5374 2.3138 -8.3012 20 6 6.2007 4.4246 -8.4543 21 7 5.3249 5.3845 -8.2445 22 14 7.7308 4.7622 -9.4715 23 1 8.5501 3.5268 -9.5580 24 1 7.3332 5.1898 -10.8368 25 1 8.5256 5.8386 -8.8274 26 6 4.3780 1.7099 -6.7421 27 6 4.5805 1.2265 -5.2980 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 2.7304 0.9068 2.0267 32 1 1.4847 2.1931 1.9319 33 1 4.0771 2.9050 2.1203 34 1 3.0245 3.7668 0.9544 35 1 5.1576 1.6973 0.4413 36 1 4.6267 3.0549 -0.5911 37 1 6.0991 2.3422 -2.0220 38 1 5.5018 0.6978 -1.6940 39 1 6.2095 1.0878 -3.2801 40 1 3.0791 2.5592 -4.5163 41 1 6.0286 3.3344 -4.3816 42 1 4.6704 4.3487 -3.8376 43 1 5.4618 4.9176 -6.1617 44 1 3.7540 4.4139 -6.1115 45 1 5.4738 6.2671 -8.6183 46 1 3.3147 1.8477 -6.9384 47 1 4.7876 0.9756 -7.4356 48 1 5.6348 1.0066 -5.1299 49 1 3.9895 0.3260 -5.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005618708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:05 Heat of formation + Delta-G solvation = -66.263242 kcal Electronic energy + Delta-G solvation = -27377.962945 eV Core-core repulsion = 23726.347108 eV Total energy + Delta-G solvation = -3651.615837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55062 -38.60426 -37.22420 -36.03897 -35.06819 -32.50662 -30.48218 -29.81596 -28.95677 -28.42757 -26.85936 -26.21444 -25.00411 -22.57259 -22.17624 -21.09506 -20.88939 -19.12992 -18.78600 -17.50382 -16.84510 -16.34888 -16.30877 -15.45010 -15.09759 -14.99973 -14.62396 -14.54270 -13.88783 -13.75024 -13.58747 -13.34167 -13.07687 -13.03218 -12.62562 -12.57978 -12.43956 -12.23256 -12.00386 -11.62032 -11.49401 -11.45311 -11.28412 -11.12524 -10.91965 -10.78437 -10.74656 -10.72329 -10.35511 -10.18669 -10.08095 -9.75215 -9.69644 -9.63025 -9.38358 -8.53330 -8.28058 -6.68470 -5.79401 -3.22375 2.77061 3.11637 3.36446 3.44325 3.46472 3.66692 4.20996 4.32902 4.48925 4.63063 4.84655 5.07821 5.10265 5.17812 5.21422 5.25644 5.32468 5.33958 5.37859 5.41483 5.44144 5.46326 5.52410 5.57366 5.61613 5.70091 5.72629 5.76320 5.82707 5.88774 5.90644 6.02160 6.09104 6.25846 6.34206 6.50641 6.60190 6.62835 6.77759 6.92770 6.97128 7.08445 7.34609 7.58297 7.67730 7.79429 8.34425 8.44512 9.20452 9.83689 10.40910 11.29182 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.003070 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.721529 B = 9117.417960 C = 9447.384240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.096 3.904 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.108 0.892 10 C 0.519 3.481 11 O -0.545 6.545 12 N -0.606 5.606 13 C 0.076 3.924 14 C 0.145 3.855 15 C -0.143 4.143 16 C 0.174 3.826 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -8.248 20.354 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.037 3.963 4 H 0.106 0.894 5 C -0.182 4.182 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.126 0.874 10 C 0.306 3.694 11 O -0.423 6.423 12 N -0.337 5.337 13 C -0.068 4.068 14 C 0.043 3.957 15 C -0.183 4.183 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.599 -8.084 20.035 21.903 hybrid contribution 0.683 0.410 -0.523 0.953 sum -2.916 -7.675 19.513 21.170 Atomic orbital electron populations 1.22759 0.80951 1.02464 1.00170 1.87840 1.19872 1.27511 1.94894 1.22923 0.93698 0.85381 0.94253 0.89434 1.22975 0.98999 0.99156 0.97042 1.22275 0.96996 0.98543 0.98193 1.22148 0.97607 0.98553 0.96821 1.21962 0.97211 1.01803 0.92379 0.87439 1.20427 0.84172 0.77625 0.87155 1.90656 1.25483 1.49943 1.76202 1.48095 1.07520 1.64962 1.13167 1.21827 0.84699 0.99973 1.00257 1.21193 1.01724 0.94508 0.78293 1.22534 0.99047 0.95693 1.01072 1.20750 0.99356 0.91611 0.83538 1.44116 1.46678 1.09022 1.31719 1.19220 1.13369 0.94142 1.11461 0.91611 1.25067 0.98313 0.97673 0.98608 1.70044 1.33554 1.03020 1.48015 0.86233 0.83033 0.77929 0.79641 1.20255 1.21722 1.21581 1.20954 0.95288 0.89438 0.92255 1.22444 1.00738 0.96890 0.97741 0.94310 0.93503 0.89876 0.90452 0.91268 0.90924 0.91205 0.90456 0.90664 0.92542 0.91491 0.90577 0.88807 0.92438 0.93214 0.89203 0.96202 0.93652 0.96200 0.92455 0.92044 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.38 -4.78 10.42 -35.23 -0.37 -5.15 16 3 C 0.10 1.13 2.67 -25.03 -0.07 1.06 16 4 H 0.09 1.19 6.56 -51.93 -0.34 0.85 16 5 C -0.14 -1.28 6.62 -24.70 -0.16 -1.45 16 6 C -0.12 -1.01 6.83 -25.08 -0.17 -1.18 16 7 C -0.11 -1.03 4.94 -25.62 -0.13 -1.16 16 8 C -0.11 -1.30 2.18 -90.65 -0.20 -1.50 16 9 H 0.11 1.17 7.31 -51.93 -0.38 0.80 16 10 C 0.52 8.01 6.84 -10.99 -0.08 7.94 16 11 O -0.55 -10.47 14.74 5.56 0.08 -10.39 16 12 N -0.61 -9.03 2.73 -173.88 -0.48 -9.50 16 13 C 0.08 0.85 8.14 59.85 0.49 1.34 16 14 C 0.14 2.61 2.48 -67.88 -0.17 2.44 16 15 C -0.14 -2.76 5.34 -26.61 -0.14 -2.90 16 16 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 17 N -0.59 -14.85 2.99 -172.05 -0.51 -15.36 16 18 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.19 11.20 55.49 0.62 -25.57 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.15 3.15 6.54 -3.49 -0.02 3.12 16 27 C -0.14 -2.46 5.33 -26.38 -0.14 -2.60 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.51 8.11 -51.93 -0.42 0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.76 6.75 -51.93 -0.35 0.41 16 37 H 0.06 0.58 7.53 -51.93 -0.39 0.18 16 38 H 0.07 0.59 6.20 -51.93 -0.32 0.27 16 39 H 0.08 0.89 6.46 -51.93 -0.34 0.55 16 40 H 0.09 1.94 6.90 -51.93 -0.36 1.58 16 41 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 48 H 0.06 1.06 6.73 -51.93 -0.35 0.72 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.80 371.56 -8.60 -40.40 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.57 Total: -0.16 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.06 Total: 3.63 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.37 Total: -50.44 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.29 Total: -15.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.80 -8.60 -40.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005618708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.862 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds