Wall clock time and date at job start Tue Mar 31 2020 09:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00217 * 2 1 4 4 H 1.08994 * 110.53873 * 332.62163 * 3 2 1 5 5 C 1.54967 * 110.52706 * 95.24603 * 3 2 1 6 6 C 1.54888 * 102.77633 * 156.56681 * 5 3 2 7 7 C 1.54259 * 104.19717 * 322.08437 * 6 5 3 8 8 C 1.53877 * 106.59909 * 23.61002 * 7 6 5 9 9 H 1.08997 * 110.03092 * 240.66630 * 8 7 6 10 10 C 1.50702 * 110.02995 * 119.28527 * 8 7 6 11 11 O 1.21279 * 119.99499 * 242.08870 * 10 8 7 12 12 N 1.34769 * 120.00307 * 62.09535 * 10 8 7 13 13 C 1.46508 * 120.00016 * 359.97438 * 12 10 8 14 14 C 1.46498 * 120.00253 * 180.02562 * 12 10 8 15 15 C 1.53043 * 109.46286 * 119.99737 * 14 12 10 16 16 C 1.53197 * 109.31048 * 181.38662 * 15 14 12 17 17 N 1.46930 * 108.77229 * 305.36329 * 16 15 14 18 18 C 1.36942 * 120.62512 * 233.58453 * 17 16 15 19 19 H 1.08000 * 119.99822 * 151.83921 * 18 17 16 20 20 C 1.38804 * 120.00133 * 331.83769 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.07682 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.07636 * 20 18 17 23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18 25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18 26 26 C 1.46921 * 118.74249 * 53.86261 * 17 16 15 27 27 C 1.53047 * 109.45712 * 240.06671 * 14 12 10 28 28 H 1.09000 * 109.46410 * 299.99750 * 1 2 3 29 29 H 1.09003 * 109.47189 * 59.99174 * 1 2 3 30 30 H 1.08996 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09009 * 110.71797 * 38.25114 * 5 3 2 32 32 H 1.09004 * 110.92436 * 274.98020 * 5 3 2 33 33 H 1.09006 * 110.48211 * 203.40610 * 6 5 3 34 34 H 1.08998 * 110.48296 * 80.76867 * 6 5 3 35 35 H 1.09000 * 110.03194 * 264.32381 * 7 6 5 36 36 H 1.08997 * 110.03185 * 142.89712 * 7 6 5 37 37 H 1.09003 * 109.46895 * 270.00655 * 13 12 10 38 38 H 1.09001 * 109.46953 * 29.99923 * 13 12 10 39 39 H 1.08991 * 109.46834 * 150.00488 * 13 12 10 40 40 H 1.08998 * 109.45017 * 0.02562 * 14 12 10 41 41 H 1.08991 * 109.49664 * 61.43601 * 15 14 12 42 42 H 1.08996 * 109.51804 * 301.35118 * 15 14 12 43 43 H 1.08994 * 109.58410 * 185.57859 * 16 15 14 44 44 H 1.08997 * 109.70673 * 65.21813 * 16 15 14 45 45 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58770 * 65.92424 * 26 17 16 47 47 H 1.08999 * 109.58848 * 186.34837 * 26 17 16 48 48 H 1.09002 * 109.49337 * 298.56187 * 27 14 12 49 49 H 1.09000 * 109.49911 * 58.65893 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 -0.4694 5 6 2.3526 1.7479 1.4452 6 6 3.4621 2.8061 1.2258 7 6 4.2960 2.2431 0.0566 8 6 3.3731 1.2896 -0.7226 9 1 3.7872 0.2814 -0.7166 10 6 3.2111 1.7725 -2.1409 11 8 2.1149 2.0889 -2.5522 12 7 4.2842 1.8525 -2.9523 13 6 5.6084 1.4706 -2.4553 14 6 4.1268 2.3224 -4.3309 15 6 4.9781 3.5765 -4.5426 16 6 4.7841 4.0847 -5.9747 17 7 5.0796 2.9900 -6.9090 18 6 5.9874 3.1614 -7.9198 19 1 6.5374 2.3138 -8.3012 20 6 6.2007 4.4246 -8.4543 21 7 5.3249 5.3845 -8.2445 22 14 7.7308 4.7622 -9.4715 23 1 8.5501 3.5268 -9.5580 24 1 7.3332 5.1898 -10.8368 25 1 8.5256 5.8386 -8.8274 26 6 4.3780 1.7099 -6.7421 27 6 4.5805 1.2265 -5.2980 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 2.7304 0.9068 2.0267 32 1 1.4847 2.1931 1.9319 33 1 4.0771 2.9050 2.1203 34 1 3.0245 3.7668 0.9544 35 1 5.1576 1.6973 0.4413 36 1 4.6267 3.0549 -0.5911 37 1 6.0991 2.3422 -2.0220 38 1 5.5018 0.6978 -1.6940 39 1 6.2095 1.0878 -3.2801 40 1 3.0791 2.5592 -4.5163 41 1 6.0286 3.3344 -4.3816 42 1 4.6704 4.3487 -3.8376 43 1 5.4618 4.9176 -6.1617 44 1 3.7540 4.4139 -6.1115 45 1 5.4738 6.2671 -8.6183 46 1 3.3147 1.8477 -6.9384 47 1 4.7876 0.9756 -7.4356 48 1 5.6348 1.0066 -5.1299 49 1 3.9895 0.3260 -5.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005618708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:04 Heat of formation + Delta-G solvation = -85.720859 kcal Electronic energy + Delta-G solvation = -27378.806691 eV Core-core repulsion = 23726.347108 eV Total energy + Delta-G solvation = -3652.459583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67363 -39.76253 -38.67248 -36.92547 -36.53447 -34.28789 -32.12906 -31.50160 -30.06792 -29.22563 -27.92452 -27.12358 -26.74368 -24.11913 -23.89425 -22.20375 -21.74853 -20.65433 -20.00244 -18.78906 -18.39290 -17.59731 -17.34803 -16.86165 -16.45889 -16.04197 -15.88977 -15.52282 -15.40778 -15.32021 -14.86167 -14.61748 -14.44763 -14.21919 -14.14005 -13.94555 -13.44454 -13.25124 -13.15059 -13.03019 -12.87925 -12.64403 -12.51722 -12.41051 -12.25411 -12.13425 -11.99155 -11.95940 -11.90433 -11.62305 -11.58392 -11.48471 -11.33475 -10.68918 -10.58749 -10.51558 -9.60252 -8.73463 -7.88848 -5.35838 1.47158 1.48796 1.59314 1.59896 1.95089 2.50889 2.81473 3.27129 3.34251 3.51332 3.62756 3.76593 3.89357 4.03809 4.11683 4.25675 4.29012 4.33739 4.39800 4.43110 4.44382 4.50142 4.51867 4.61455 4.64176 4.68736 4.71256 4.73068 4.82257 4.83911 4.92813 4.97678 5.02064 5.03691 5.06649 5.11641 5.15757 5.18787 5.26517 5.37922 5.43349 5.59682 5.62536 5.67588 6.22921 6.37070 6.44256 7.11962 7.15017 7.81537 8.35274 9.18367 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027724 B = 0.003070 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.721529 B = 9117.417960 C = 9447.384240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.089 3.911 4 H 0.059 0.941 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.105 4.105 9 H 0.123 0.877 10 C 0.511 3.489 11 O -0.593 6.593 12 N -0.603 5.603 13 C 0.068 3.932 14 C 0.154 3.846 15 C -0.124 4.124 16 C 0.182 3.818 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.143 3.857 27 C -0.121 4.121 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.060 0.940 44 H -0.013 1.013 45 H 0.250 0.750 46 H 0.005 0.995 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 -9.965 22.787 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.318 6.318 3 C 0.030 3.970 4 H 0.077 0.923 5 C -0.172 4.172 6 C -0.158 4.158 7 C -0.147 4.147 8 C -0.126 4.126 9 H 0.140 0.860 10 C 0.301 3.699 11 O -0.474 6.474 12 N -0.334 5.334 13 C -0.073 4.073 14 C 0.050 3.950 15 C -0.164 4.164 16 C 0.055 3.945 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.017 3.983 27 C -0.161 4.161 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.005 0.995 45 H 0.059 0.941 46 H 0.023 0.977 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.439 -9.840 22.500 24.600 hybrid contribution -0.086 0.917 -1.307 1.599 sum -1.526 -8.923 21.193 23.045 Atomic orbital electron populations 1.22879 0.80002 1.03633 1.00125 1.87796 1.21009 1.27917 1.95088 1.22997 0.93241 0.84623 0.96098 0.92307 1.22925 0.99610 0.99688 0.94978 1.22299 0.96914 0.97691 0.98882 1.22203 0.98055 0.97949 0.96492 1.22022 0.97985 1.02931 0.89673 0.85967 1.21219 0.83370 0.76720 0.88591 1.90641 1.27439 1.52001 1.77315 1.48052 1.09226 1.64483 1.11639 1.22139 0.82447 1.01642 1.01099 1.20775 0.99360 0.94153 0.80712 1.22245 1.00018 0.96438 0.97683 1.20508 0.96493 0.91066 0.86400 1.44367 1.46931 1.10156 1.31718 1.19582 1.13582 0.94406 1.11606 0.91058 1.25876 1.01075 0.97555 1.00224 1.70212 1.35430 1.03233 1.49522 0.85163 0.79479 0.78004 0.77516 1.18717 1.22194 1.21558 1.21087 0.94041 0.88183 0.94978 1.22229 1.01889 0.97013 0.94922 0.92591 0.95348 0.88125 0.89239 0.90612 0.88407 0.92264 0.87284 0.91708 0.90985 0.88413 0.90565 0.92193 0.91135 0.92618 0.92114 0.99527 0.94095 0.97739 0.91730 0.90527 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.85 113.37 1.23 1.81 16 2 O -0.40 -9.53 10.42 -148.98 -1.55 -11.08 16 3 C 0.09 2.00 2.67 31.69 0.08 2.08 16 4 H 0.06 1.66 6.56 -2.39 -0.02 1.64 16 5 C -0.13 -2.05 6.62 31.91 0.21 -1.84 16 6 C -0.12 -1.62 6.83 31.67 0.22 -1.41 16 7 C -0.11 -1.62 4.94 31.32 0.15 -1.46 16 8 C -0.10 -2.22 2.18 -10.82 -0.02 -2.24 16 9 H 0.12 2.24 7.31 -2.39 -0.02 2.23 16 10 C 0.51 15.48 6.84 87.66 0.60 16.08 16 11 O -0.59 -23.60 14.74 -3.03 -0.04 -23.65 16 12 N -0.60 -17.09 2.73 -822.42 -2.25 -19.33 16 13 C 0.07 1.29 8.14 127.77 1.04 2.33 16 14 C 0.15 5.52 2.48 45.02 0.11 5.64 16 15 C -0.12 -4.78 5.34 30.67 0.16 -4.62 16 16 C 0.18 9.08 5.30 86.36 0.46 9.53 16 17 N -0.61 -31.04 2.99 -698.26 -2.09 -33.13 16 18 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.94 -56.25 11.20 21.65 0.24 -56.00 16 22 Si 0.97 44.60 29.59 68.60 2.03 46.63 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 C 0.14 6.15 6.54 86.51 0.57 6.72 16 27 C -0.12 -4.17 5.33 30.82 0.16 -4.01 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.03 0.64 8.11 -2.39 -0.02 0.62 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.13 6.75 -2.39 -0.02 1.11 16 37 H 0.07 1.18 7.53 -2.39 -0.02 1.16 16 38 H 0.10 1.27 6.20 -2.39 -0.01 1.26 16 39 H 0.08 1.48 6.46 -2.39 -0.02 1.47 16 40 H 0.06 2.59 6.90 -2.39 -0.02 2.58 16 41 H 0.07 2.55 7.72 -2.39 -0.02 2.54 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 3.37 6.06 -2.39 -0.01 3.36 16 44 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 47 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 48 H 0.08 2.45 6.73 -2.39 -0.02 2.44 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.20 371.56 3.45 -68.75 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.91 Total: 15.27 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.20 Total: 12.54 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -4.09 Total: -108.47 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.60 Total: -34.73 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.20 3.45 -68.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005618708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.972 kcal (2) G-P(sol) polarization free energy of solvation -72.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds