Wall clock time and date at job start Tue Mar 31 2020 10:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99763 * 2 1 4 4 H 1.09000 * 110.81598 * 26.66226 * 3 2 1 5 5 C 1.54892 * 110.75325 * 263.32802 * 3 2 1 6 6 C 1.54268 * 104.19168 * 203.74217 * 5 3 2 7 7 C 1.53872 * 106.60100 * 23.61530 * 6 5 3 8 8 C 1.54267 * 106.59858 * 359.97438 * 7 6 5 9 9 H 1.08998 * 110.48236 * 95.20112 * 8 7 6 10 10 C 1.50699 * 110.48664 * 217.71454 * 8 7 6 11 11 O 1.21280 * 119.99765 * 118.54785 * 10 8 7 12 12 N 1.34769 * 120.00039 * 298.54644 * 10 8 7 13 13 C 1.46498 * 120.00067 * 179.97438 * 12 10 8 14 14 C 1.53008 * 109.47261 * 184.76605 * 13 12 10 15 15 N 1.46499 * 110.01784 * 54.61338 * 14 13 12 16 16 C 1.36938 * 119.99635 * 61.57073 * 15 14 13 17 17 H 1.08001 * 120.00363 * 354.39214 * 16 15 14 18 18 C 1.38809 * 119.99823 * 174.38778 * 16 15 14 19 19 N 1.31630 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00365 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46992 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47597 * 119.99659 * 20 18 16 23 23 H 1.48503 * 109.46964 * 240.00011 * 20 18 16 24 24 C 1.54268 * 110.02907 * 293.22314 * 14 13 12 25 25 C 1.54968 * 104.15697 * 217.13379 * 24 14 13 26 26 C 1.54894 * 102.77772 * 37.89127 * 25 24 14 27 27 C 1.53874 * 110.03004 * 176.00626 * 14 13 12 28 28 H 1.09005 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47001 * 299.99994 * 1 2 3 30 30 H 1.08998 * 109.47939 * 60.00053 * 1 2 3 31 31 H 1.09001 * 110.48343 * 85.06690 * 5 3 2 32 32 H 1.08994 * 110.49050 * 322.42257 * 5 3 2 33 33 H 1.08994 * 110.03372 * 264.32199 * 6 5 3 34 34 H 1.09007 * 110.02797 * 142.89748 * 6 5 3 35 35 H 1.09005 * 110.03036 * 240.70959 * 7 6 5 36 36 H 1.08998 * 110.03759 * 119.28268 * 7 6 5 37 37 H 0.97003 * 120.00007 * 359.97438 * 12 10 8 38 38 H 1.09002 * 109.47010 * 64.76930 * 13 12 10 39 39 H 1.09000 * 109.47484 * 304.76986 * 13 12 10 40 40 H 0.96995 * 120.00183 * 241.57531 * 15 14 13 41 41 H 0.97000 * 119.99541 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.48977 * 335.77782 * 24 14 13 43 43 H 1.08994 * 110.48507 * 98.43049 * 24 14 13 44 44 H 1.08997 * 110.72234 * 279.57903 * 25 24 14 45 45 H 1.09007 * 110.76142 * 156.22174 * 25 24 14 46 46 H 1.08994 * 110.48592 * 203.40484 * 26 25 24 47 47 H 1.08998 * 110.59936 * 80.81186 * 26 25 24 48 48 H 1.09005 * 110.03197 * 238.56767 * 27 14 13 49 49 H 1.08998 * 110.03708 * 359.94804 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3359 2.0297 0.4572 5 6 2.3871 1.7385 -1.4386 6 6 3.4947 2.7934 -1.2381 7 6 4.1256 2.5126 0.1369 8 6 3.3790 1.2971 0.7244 9 1 3.9206 0.3762 0.5089 10 6 3.1908 1.4616 2.2105 11 8 2.0730 1.5084 2.6787 12 7 4.2646 1.5566 3.0193 13 6 4.0817 1.7171 4.4639 14 6 5.4438 1.9182 5.1313 15 7 6.1492 3.0383 4.5037 16 6 5.6103 4.2965 4.5454 17 1 4.6248 4.4484 4.9602 18 6 6.3308 5.3767 4.0545 19 7 7.5318 5.1915 3.5486 20 14 5.5961 7.0932 4.1120 21 1 4.2441 7.0327 4.7232 22 1 6.4683 7.9781 4.9253 23 1 5.4915 7.6333 2.7326 24 6 6.2854 0.6307 5.0130 25 6 7.0472 0.5509 6.3602 26 6 5.9949 1.0540 7.3793 27 6 5.2593 2.1875 6.6350 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.5267 2.1796 -1.9420 32 1 2.7676 0.8888 -2.0054 33 1 3.0641 3.7946 -1.2539 34 1 4.2473 2.6979 -2.0208 35 1 4.0011 3.3775 0.7885 36 1 5.1844 2.2808 0.0217 37 1 5.1587 1.5188 2.6449 38 1 3.6058 0.8250 4.8712 39 1 3.4511 2.5851 4.6562 40 1 6.9979 2.8887 4.0585 41 1 8.0353 5.9464 3.2059 42 1 5.6386 -0.2378 4.8887 43 1 6.9860 0.7080 4.1817 44 1 7.9187 1.2055 6.3498 45 1 7.3372 -0.4767 6.5798 46 1 6.4839 1.4395 8.2738 47 1 5.3004 0.2551 7.6394 48 1 5.6954 3.1513 6.8980 49 1 4.1994 2.1759 6.8892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:22 Heat of formation + Delta-G solvation = -93.695800 kcal Electronic energy + Delta-G solvation = -27516.361832 eV Core-core repulsion = 23863.556430 eV Total energy + Delta-G solvation = -3652.805402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96448 -38.62954 -37.58408 -35.79674 -34.02894 -33.27080 -30.73276 -29.44966 -28.29332 -28.24491 -27.49941 -26.00668 -24.36832 -23.20883 -21.50215 -20.50429 -20.34688 -19.38882 -18.54397 -17.29406 -17.02159 -16.58398 -15.76178 -15.29514 -15.04264 -14.82251 -14.71275 -14.36143 -14.20105 -13.97374 -13.45677 -13.27508 -13.08228 -12.96845 -12.57409 -12.47437 -12.04654 -11.86783 -11.56407 -11.40967 -11.29120 -11.11165 -11.00644 -10.84282 -10.68548 -10.58807 -10.55944 -10.49886 -10.43887 -10.31695 -10.06961 -9.81099 -9.65440 -9.46084 -9.26868 -8.92850 -8.37698 -7.01547 -5.81743 -3.10393 3.13714 3.39449 3.47640 3.48436 3.66061 3.91370 4.49036 4.55567 4.69465 4.96680 5.10435 5.13547 5.24569 5.26400 5.38148 5.39067 5.41570 5.48549 5.53763 5.56969 5.63568 5.66914 5.68513 5.74316 5.78769 5.91798 5.96501 6.00048 6.02777 6.10312 6.13728 6.16498 6.24313 6.25881 6.34524 6.38238 6.44886 6.58746 6.64404 6.74042 6.85091 7.03943 7.16811 7.28138 7.72025 8.12583 8.37090 8.77362 9.48944 10.03211 10.39122 11.40319 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.004962 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.863622 B = 5641.762427 C = 7236.406650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.104 3.896 4 H 0.081 0.919 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.111 4.111 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.557 6.557 12 N -0.698 5.698 13 C 0.119 3.881 14 C 0.188 3.812 15 N -0.711 5.711 16 C -0.229 4.229 17 H 0.069 0.931 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.130 4.130 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.384 0.616 41 H 0.253 0.747 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.082 0.918 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -10.532 -5.463 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.045 3.955 4 H 0.099 0.901 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.133 4.133 9 H 0.123 0.877 10 C 0.305 3.695 11 O -0.436 6.436 12 N -0.347 5.347 13 C -0.007 4.007 14 C 0.096 3.904 15 N -0.352 5.352 16 C -0.360 4.360 17 H 0.087 0.913 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.730 3.270 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.170 4.170 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.107 -10.486 -5.076 13.647 hybrid contribution 0.152 1.313 -0.271 1.349 sum -6.955 -9.173 -5.347 12.693 Atomic orbital electron populations 1.22722 0.81253 1.02235 0.99976 1.87832 1.19621 1.27481 1.94815 1.22922 0.93504 0.85109 0.93949 0.90109 1.22823 0.98884 0.99305 0.97216 1.22023 0.97660 0.98915 0.97174 1.22068 0.99694 0.97066 0.96421 1.22199 0.97616 1.01228 0.92211 0.87719 1.20275 0.84805 0.76197 0.88241 1.90627 1.24446 1.51452 1.77099 1.45708 1.08877 1.72297 1.07856 1.21929 0.99217 0.99912 0.79674 1.20454 0.90049 0.88293 0.91575 1.42520 1.24449 1.03107 1.65134 1.19126 0.99072 0.84184 1.33620 0.91324 1.24671 0.96300 0.97538 1.01938 1.69664 1.11575 1.30010 1.46652 0.86245 0.78200 0.85368 0.77190 1.20628 1.21950 1.21994 1.22601 0.98590 0.97182 0.97780 1.22422 0.98349 0.99843 0.95008 1.22304 0.97607 0.98054 0.97859 1.22662 0.99172 0.99487 0.95661 0.90101 0.93537 0.94546 0.91548 0.90628 0.91464 0.91253 0.90188 0.90306 0.76378 0.93245 0.91775 0.78182 0.93665 0.91809 0.91552 0.91268 0.92630 0.92490 0.92623 0.89957 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.50 16 2 O -0.38 -5.51 10.49 -35.23 -0.37 -5.88 16 3 C 0.10 1.46 2.40 -24.75 -0.06 1.40 16 4 H 0.08 1.25 7.21 -51.93 -0.37 0.88 16 5 C -0.14 -1.64 6.55 -25.07 -0.16 -1.81 16 6 C -0.12 -1.39 6.80 -25.61 -0.17 -1.56 16 7 C -0.11 -1.57 6.30 -25.61 -0.16 -1.73 16 8 C -0.11 -1.62 2.98 -90.12 -0.27 -1.89 16 9 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 10 C 0.52 9.30 7.01 -10.99 -0.08 9.22 16 11 O -0.56 -11.72 15.76 5.56 0.09 -11.63 16 12 N -0.70 -12.18 5.16 -60.29 -0.31 -12.49 16 13 C 0.12 2.19 4.04 -4.04 -0.02 2.17 16 14 C 0.19 3.39 0.68 -130.70 -0.09 3.31 16 15 N -0.71 -15.68 4.62 -46.19 -0.21 -15.89 16 16 C -0.23 -5.83 8.52 -15.06 -0.13 -5.95 16 17 H 0.07 1.79 7.28 -52.49 -0.38 1.41 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.31 13.07 55.49 0.73 -25.58 16 20 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C -0.12 -1.88 5.63 -25.03 -0.14 -2.02 16 25 C -0.12 -1.70 6.91 -24.69 -0.17 -1.88 16 26 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 27 C -0.13 -2.27 5.93 -25.61 -0.15 -2.42 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 6.66 7.98 -40.82 -0.33 6.33 16 38 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.06 1.36 7.48 -51.93 -0.39 0.97 16 40 H 0.38 9.07 7.44 -40.82 -0.30 8.77 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 0.90 7.78 -51.93 -0.40 0.49 16 43 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.66 7.36 -51.93 -0.38 1.28 16 49 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -29.66 384.82 -8.89 -38.56 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.81 Total: 14.17 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.77 Total: -3.91 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.20 Total: -53.96 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.28 Total: -17.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.66 -8.89 -38.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.140 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds