Wall clock time and date at job start Tue Mar 31 2020 10:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99742 * 2 1 4 4 H 1.09001 * 110.05615 * 331.41338 * 3 2 1 5 5 C 1.54261 * 110.03114 * 92.83508 * 3 2 1 6 6 C 1.54892 * 104.19519 * 142.89423 * 5 3 2 7 7 C 1.54893 * 102.74852 * 322.05642 * 6 5 3 8 8 C 1.53870 * 110.03155 * 210.00248 * 3 2 1 9 9 H 1.09004 * 110.03760 * 121.38179 * 8 3 2 10 10 C 1.50701 * 110.03525 * 359.97438 * 8 3 2 11 11 O 1.21281 * 120.00374 * 274.40642 * 10 8 3 12 12 N 1.34779 * 119.99878 * 94.40106 * 10 8 3 13 13 C 1.46500 * 119.99847 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47301 * 184.65898 * 13 12 10 15 15 N 1.46509 * 110.01044 * 53.94169 * 14 13 12 16 16 C 1.36938 * 119.99938 * 59.92201 * 15 14 13 17 17 H 1.07998 * 119.99819 * 5.65184 * 16 15 14 18 18 C 1.38813 * 119.99759 * 185.65551 * 16 15 14 19 19 N 1.31615 * 120.00074 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99828 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47188 * 59.99816 * 20 18 16 22 22 H 1.48498 * 109.46811 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47231 * 299.99714 * 20 18 16 24 24 C 1.54264 * 110.03404 * 292.55681 * 14 13 12 25 25 C 1.54964 * 104.15841 * 217.13352 * 24 14 13 26 26 C 1.54894 * 102.77866 * 37.88488 * 25 24 14 27 27 C 1.53875 * 110.03328 * 175.33194 * 14 13 12 28 28 H 1.08999 * 109.47483 * 299.99729 * 1 2 3 29 29 H 1.08998 * 109.47346 * 60.00300 * 1 2 3 30 30 H 1.09009 * 109.46971 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.48604 * 261.56866 * 5 3 2 32 32 H 1.09004 * 110.48759 * 24.21700 * 5 3 2 33 33 H 1.09003 * 110.75585 * 80.37352 * 6 5 3 34 34 H 1.09004 * 110.75759 * 203.55862 * 6 5 3 35 35 H 1.08999 * 110.48162 * 279.26431 * 7 6 5 36 36 H 1.09001 * 110.48315 * 156.61906 * 7 6 5 37 37 H 0.96993 * 120.00112 * 0.02562 * 12 10 8 38 38 H 1.08999 * 109.47314 * 304.66102 * 13 12 10 39 39 H 1.09006 * 109.47055 * 64.66283 * 13 12 10 40 40 H 0.96998 * 119.99896 * 239.91696 * 15 14 13 41 41 H 0.96994 * 120.00208 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.48521 * 335.77722 * 24 14 13 43 43 H 1.08998 * 110.49198 * 98.42229 * 24 14 13 44 44 H 1.08997 * 110.71976 * 279.57163 * 25 24 14 45 45 H 1.09003 * 110.76666 * 156.22038 * 25 24 14 46 46 H 1.09000 * 110.48848 * 203.40584 * 26 25 24 47 47 H 1.08998 * 110.48947 * 80.76152 * 26 25 24 48 48 H 1.09002 * 110.03063 * 238.57277 * 27 14 13 49 49 H 1.08998 * 110.03126 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3408 2.0127 -0.4899 5 6 2.2905 1.7591 1.4475 6 6 3.6252 2.5389 1.3494 7 6 4.4266 1.7156 0.3106 8 6 3.3682 1.2779 -0.7229 9 1 3.3577 1.9710 -1.5641 10 6 3.6669 -0.1175 -1.2074 11 8 4.1955 -0.9173 -0.4645 12 7 3.3464 -0.4768 -2.4662 13 6 3.6363 -1.8334 -2.9371 14 6 3.2837 -1.9443 -4.4218 15 7 3.9653 -0.8914 -5.1789 16 6 5.3329 -0.8212 -5.1749 17 1 5.9118 -1.5933 -4.6900 18 6 5.9750 0.2425 -5.7938 19 7 5.2695 1.1832 -6.3850 20 14 7.8405 0.3387 -5.7877 21 1 8.4003 -0.8599 -6.4623 22 1 8.2754 1.5611 -6.5102 23 1 8.3289 0.3913 -4.3864 24 6 1.7573 -1.8285 -4.6125 25 6 1.4416 -2.8247 -5.7567 26 6 2.3980 -4.0055 -5.4565 27 6 3.6912 -3.3277 -4.9585 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.4931 2.4111 1.8042 32 1 2.4006 0.8954 2.1034 33 1 3.4543 3.5535 0.9895 34 1 4.1360 2.5532 2.3123 35 1 4.8816 0.8450 0.7829 36 1 5.1880 2.3359 -0.1623 37 1 2.9239 0.1629 -3.0605 38 1 4.6960 -2.0476 -2.7983 39 1 3.0433 -2.5498 -2.3684 40 1 3.4479 -0.2442 -5.6831 41 1 5.7181 1.9263 -6.8179 42 1 1.2357 -2.1180 -3.7001 43 1 1.4849 -0.8139 -4.9031 44 1 1.6672 -2.3819 -6.7268 45 1 0.4018 -3.1487 -5.7112 46 1 2.5926 -4.5788 -6.3629 47 1 1.9804 -4.6470 -4.6805 48 1 4.3955 -3.2156 -5.7829 49 1 4.1398 -3.9202 -4.1611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665886.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:25 Heat of formation + Delta-G solvation = -89.661502 kcal Electronic energy + Delta-G solvation = -27818.110789 eV Core-core repulsion = 24165.480327 eV Total energy + Delta-G solvation = -3652.630462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95559 -38.60997 -37.50730 -35.68472 -33.90898 -33.16710 -30.67137 -29.42237 -28.27116 -28.24694 -27.51262 -26.08225 -24.32902 -23.16891 -21.32290 -20.81585 -20.28209 -19.24849 -18.44897 -17.33488 -16.98811 -16.30738 -15.68597 -15.48249 -15.15279 -14.85837 -14.51449 -14.32779 -14.09521 -13.81516 -13.70880 -13.29985 -13.13717 -12.79978 -12.56945 -12.38652 -11.92393 -11.55723 -11.45796 -11.41102 -11.26089 -11.06138 -10.97615 -10.77152 -10.70617 -10.67002 -10.57093 -10.55784 -10.48171 -10.31344 -10.04695 -9.78568 -9.60972 -9.56389 -9.12890 -8.86589 -8.17578 -6.97779 -5.77972 -3.06340 3.32666 3.44591 3.48841 3.51213 3.71774 3.98162 4.51905 4.59263 4.61704 4.96134 5.13341 5.14510 5.16642 5.27790 5.28435 5.29759 5.42522 5.49619 5.56212 5.58325 5.61482 5.65231 5.71431 5.75163 5.82338 5.83847 5.99053 6.01878 6.03354 6.04929 6.11683 6.20321 6.21630 6.28559 6.38526 6.45865 6.50606 6.62493 6.70067 6.77506 6.90497 7.08803 7.21476 7.31929 7.74508 8.32932 8.41131 9.00268 9.52772 10.07117 10.42964 11.44200 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.005420 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.821376 B = 5165.240737 C = 6937.602082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.099 3.901 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.115 4.115 9 H 0.097 0.903 10 C 0.537 3.463 11 O -0.554 6.554 12 N -0.696 5.696 13 C 0.124 3.876 14 C 0.189 3.811 15 N -0.711 5.711 16 C -0.228 4.228 17 H 0.068 0.932 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.131 4.131 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 0.029 10.471 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.040 3.960 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.136 4.136 9 H 0.115 0.885 10 C 0.322 3.678 11 O -0.433 6.433 12 N -0.345 5.345 13 C -0.002 4.002 14 C 0.097 3.903 15 N -0.352 5.352 16 C -0.359 4.359 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.582 5.582 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.171 4.171 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.705 -0.718 10.989 15.358 hybrid contribution 0.556 0.915 -0.592 1.224 sum -10.149 0.198 10.397 14.530 Atomic orbital electron populations 1.22759 0.81592 1.02617 0.99557 1.88093 1.19090 1.26873 1.94827 1.22700 0.93095 0.84937 0.95254 0.91355 1.22876 0.97766 1.00481 0.97030 1.22409 0.95482 0.98460 0.99450 1.22341 0.96600 1.00696 0.95303 1.22080 0.95531 0.96478 0.99543 0.88477 1.19790 0.77643 0.88604 0.81745 1.90591 1.44121 1.53074 1.55511 1.45621 1.61482 1.14789 1.12597 1.21816 1.00502 0.82511 0.95368 1.20471 0.90463 0.89971 0.89444 1.42506 1.03737 1.32447 1.56557 1.19047 0.82748 1.04828 1.29305 0.91405 1.24662 0.97399 0.97145 1.01334 1.69633 1.33977 1.13084 1.41502 0.86369 0.86164 0.76812 0.77496 1.21357 1.21829 1.21331 1.22589 0.95876 0.99415 0.98130 1.22429 0.97941 0.96196 0.99106 1.22304 0.96390 0.97169 0.99937 1.22691 0.97242 0.96174 1.01027 0.94412 0.94080 0.89852 0.91631 0.90209 0.91411 0.91131 0.89363 0.91020 0.76722 0.92003 0.93415 0.78238 0.93617 0.91756 0.91658 0.91387 0.92674 0.92519 0.92589 0.90160 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.37 -5.36 8.81 -35.24 -0.31 -5.67 16 3 C 0.10 1.26 3.35 -25.62 -0.09 1.17 16 4 H 0.07 0.73 7.81 -51.93 -0.41 0.33 16 5 C -0.14 -1.59 6.56 -25.07 -0.16 -1.76 16 6 C -0.12 -1.30 6.91 -24.73 -0.17 -1.47 16 7 C -0.11 -1.56 6.31 -25.07 -0.16 -1.72 16 8 C -0.11 -1.72 3.29 -90.65 -0.30 -2.02 16 9 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 10 C 0.54 10.22 5.57 -10.98 -0.06 10.16 16 11 O -0.55 -12.39 15.74 5.55 0.09 -12.30 16 12 N -0.70 -13.05 5.22 -60.29 -0.31 -13.36 16 13 C 0.12 2.41 4.00 -4.04 -0.02 2.40 16 14 C 0.19 3.50 0.68 -130.70 -0.09 3.41 16 15 N -0.71 -16.12 4.58 -46.19 -0.21 -16.33 16 16 C -0.23 -5.95 8.50 -15.06 -0.13 -6.08 16 17 H 0.07 1.80 7.47 -52.49 -0.39 1.41 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.77 13.07 55.49 0.73 -26.05 16 20 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C -0.12 -1.91 5.66 -25.03 -0.14 -2.05 16 25 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 26 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 27 C -0.13 -2.32 5.90 -25.61 -0.15 -2.48 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.43 6.90 -51.93 -0.36 1.08 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 7.22 8.00 -40.82 -0.33 6.90 16 38 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 39 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 40 H 0.38 9.27 7.45 -40.82 -0.30 8.97 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.06 0.94 7.77 -51.93 -0.40 0.54 16 43 H 0.06 1.03 7.73 -51.93 -0.40 0.63 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 1.62 7.42 -51.93 -0.39 1.24 16 49 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -30.83 383.04 -8.90 -39.73 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -8.81 Total: 14.12 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -0.81 Total: -3.18 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.20 Total: -55.74 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.22 Total: -17.97 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.83 -8.90 -39.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665886.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.933 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds