Wall clock time and date at job start Tue Mar 31 2020 10:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47144 * 239.99474 * 2 1 3 5 5 C 1.50699 * 109.46690 * 60.00483 * 4 2 1 6 6 H 1.07995 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99393 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00563 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99546 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47283 * 89.99712 * 9 7 5 11 11 H 1.48504 * 109.46832 * 209.99699 * 9 7 5 12 12 H 1.48500 * 109.47182 * 329.99819 * 9 7 5 13 13 C 1.53008 * 109.46964 * 119.99463 * 2 1 3 14 14 N 1.46504 * 109.47219 * 300.00478 * 13 2 1 15 15 C 1.34774 * 119.99530 * 180.02562 * 14 13 2 16 16 O 1.21581 * 120.00611 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99580 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99787 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47217 * 34.99630 * 18 17 15 20 20 C 1.53002 * 109.47030 * 274.99395 * 18 17 15 21 21 C 1.52997 * 109.46965 * 179.97438 * 20 18 17 22 22 C 1.53005 * 109.46733 * 60.00506 * 21 20 18 23 23 C 1.52999 * 109.47159 * 299.99162 * 22 21 20 24 24 C 1.52997 * 109.47317 * 300.00546 * 23 22 21 25 25 C 1.52992 * 109.46961 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.46941 * 154.99599 * 18 17 15 27 27 H 1.08998 * 109.46814 * 300.00294 * 1 2 3 28 28 H 1.08999 * 109.46557 * 60.00198 * 1 2 3 29 29 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46950 * 300.00128 * 3 2 1 32 32 H 1.09006 * 109.47114 * 59.99589 * 3 2 1 33 33 H 1.09003 * 109.47021 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47075 * 300.00331 * 4 2 1 35 35 H 0.96994 * 120.00223 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47009 * 179.97438 * 13 2 1 37 37 H 1.09009 * 109.46810 * 60.00128 * 13 2 1 38 38 H 0.96996 * 119.99640 * 359.97438 * 14 13 2 39 39 H 0.96997 * 119.99625 * 359.97438 * 17 15 14 40 40 H 1.09000 * 109.47312 * 300.00176 * 20 18 17 41 41 H 1.09004 * 109.46930 * 60.00232 * 20 18 17 42 42 H 1.09001 * 109.46989 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47530 * 300.00569 * 21 20 18 44 44 H 1.09002 * 109.46935 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47360 * 59.99776 * 22 21 20 46 46 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 47 47 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.47261 * 59.99813 * 24 23 22 49 49 H 1.09001 * 109.47066 * 180.02562 * 25 23 22 50 50 H 1.08996 * 109.47747 * 300.00196 * 25 23 22 51 51 H 1.09002 * 109.47103 * 60.00608 * 25 23 22 52 52 H 1.09000 * 109.47140 * 59.99984 * 26 18 17 53 53 H 1.09001 * 109.47375 * 299.99966 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2253 1.4394 -5.6619 11 1 1.0820 -0.5817 -6.3610 12 1 -0.0607 1.0354 -4.9610 13 6 2.0401 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4455 15 6 1.8777 -0.4907 3.6696 16 8 2.5767 -1.4791 3.7813 17 7 1.4279 0.1444 4.7701 18 6 1.7827 -0.3554 6.1006 19 1 2.7936 -0.7623 6.0782 20 6 0.7998 -1.4535 6.5117 21 6 1.1708 -1.9759 7.9011 22 6 1.1055 -0.8287 8.9114 23 6 2.0884 0.2694 8.5004 24 6 3.5073 -0.3020 8.4684 25 6 2.0236 1.4162 9.5110 26 6 1.7171 0.7920 7.1106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1301 -0.7209 -1.2494 34 1 1.6767 -1.7490 -1.2491 35 1 2.8608 -1.8832 -4.7334 36 1 3.1300 -0.7216 1.2492 37 1 1.6767 -1.7489 1.2494 38 1 0.9942 0.7583 2.3564 39 1 0.8699 0.9328 4.6809 40 1 -0.2111 -1.0465 6.5341 41 1 0.8466 -2.2709 5.7922 42 1 0.4703 -2.7579 8.1942 43 1 2.1816 -2.3829 7.8783 44 1 1.3694 -1.2010 9.9013 45 1 0.0946 -0.4217 8.9342 46 1 3.7716 -0.6742 9.4582 47 1 4.2075 0.4802 8.1751 48 1 3.5538 -1.1193 7.7485 49 1 2.7235 2.1987 9.2179 50 1 1.0129 1.8234 9.5342 51 1 2.2881 1.0437 10.5006 52 1 0.7061 1.1990 7.1330 53 1 2.4173 1.5744 6.8177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355259607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:04 Heat of formation + Delta-G solvation = -77.790584 kcal Electronic energy + Delta-G solvation = -26714.703187 eV Core-core repulsion = 23198.420581 eV Total energy + Delta-G solvation = -3516.282606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44116 -39.19140 -37.15550 -34.71412 -33.55760 -32.73070 -31.99945 -29.63876 -27.64640 -27.06286 -26.64263 -26.48678 -25.92352 -23.15107 -22.44769 -21.44224 -20.49212 -19.07614 -18.36882 -17.53947 -16.50700 -16.16911 -15.41030 -15.15721 -15.00104 -14.64696 -14.60889 -14.29968 -13.97963 -13.86956 -13.55168 -13.37487 -13.01888 -12.83415 -12.70237 -12.39463 -12.21059 -12.14492 -12.04728 -11.75964 -11.67336 -11.38464 -11.23647 -11.12067 -10.99884 -10.84501 -10.79255 -10.61928 -10.47842 -10.37171 -10.28786 -10.22837 -9.92517 -9.84926 -9.17661 -9.06750 -8.90700 -8.49552 -8.34483 -5.98430 -3.99643 2.89723 3.31643 3.38642 3.40403 3.47014 4.30519 4.34279 4.39288 4.46523 4.60558 4.84010 4.86406 5.07037 5.07856 5.19255 5.21449 5.35622 5.37010 5.37422 5.40053 5.52996 5.55334 5.63297 5.65795 5.67562 5.76097 5.77203 5.77962 5.87180 5.96125 5.97813 6.07787 6.11679 6.20619 6.25181 6.27729 6.33211 6.44630 6.61194 6.63615 6.65228 6.84750 7.08979 7.09970 7.11589 7.19699 7.66379 7.79047 8.00407 8.25719 8.42363 8.86363 9.05206 9.63266 11.13022 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.002252 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.695300 B =12427.890137 C =12591.855637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.147 3.853 14 N -0.738 5.738 15 C 0.700 3.300 16 O -0.594 6.594 17 N -0.749 5.749 18 C 0.164 3.836 19 H 0.090 0.910 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.109 4.109 23 C -0.060 4.060 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.115 4.115 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.393 0.607 39 H 0.392 0.608 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.055 0.945 52 H 0.066 0.934 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 5.893 26.545 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.024 3.976 14 N -0.393 5.393 15 C 0.400 3.600 16 O -0.473 6.473 17 N -0.404 5.404 18 C 0.058 3.942 19 H 0.108 0.892 20 C -0.169 4.169 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.061 4.061 24 C -0.206 4.206 25 C -0.198 4.198 26 C -0.153 4.153 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.225 0.775 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.210 4.843 26.476 27.106 hybrid contribution -0.854 1.155 -1.084 1.800 sum -4.064 5.998 25.392 26.405 Atomic orbital electron populations 1.21750 0.95344 1.01116 1.00100 1.20908 0.95422 0.95838 0.95075 1.21749 1.00525 0.95941 1.00098 1.19093 0.96384 0.95249 0.89459 1.21181 1.31135 1.12019 0.90520 0.92285 1.25020 0.95376 0.95081 0.99082 1.69962 1.36998 1.22991 1.23414 0.86650 0.79159 0.79399 0.83092 1.20796 1.21359 1.19974 1.21468 0.98601 0.95602 0.81940 1.45381 1.56155 1.33158 1.04619 1.16038 0.80396 0.83016 0.80590 1.90903 1.42881 1.27488 1.85979 1.45228 1.57130 1.33127 1.04927 1.20807 0.99737 0.93606 0.80001 0.89199 1.21952 0.99059 0.99011 0.96876 1.21547 1.02158 0.97625 0.94387 1.21630 0.98939 0.95444 0.98628 1.20478 0.95886 0.95416 0.94284 1.22023 0.95261 1.01355 1.01994 1.21858 1.01720 0.97679 0.98547 1.21876 1.02062 0.97501 0.93888 0.95332 0.91520 0.93398 0.93390 0.91533 0.95322 0.96318 0.96308 0.93051 0.92104 0.92110 0.77256 0.77530 0.92119 0.91245 0.91885 0.91385 0.91937 0.91976 0.92665 0.92643 0.91674 0.92601 0.92698 0.92571 0.91511 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.37 0.54 -154.50 -0.08 -1.46 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.58 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -10.99 4.96 -65.22 -0.32 -11.32 16 15 C 0.70 10.91 8.53 -86.91 -0.74 10.17 16 16 O -0.59 -11.79 16.01 5.29 0.08 -11.70 16 17 N -0.75 -8.42 5.08 -58.68 -0.30 -8.72 16 18 C 0.16 1.68 2.18 -67.93 -0.15 1.53 16 19 H 0.09 1.13 5.86 -51.93 -0.30 0.83 16 20 C -0.13 -1.30 5.49 -26.73 -0.15 -1.44 16 21 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 22 C -0.11 -0.74 4.73 -26.73 -0.13 -0.86 16 23 C -0.06 -0.41 0.77 -154.49 -0.12 -0.53 16 24 C -0.15 -1.11 7.78 37.16 0.29 -0.82 16 25 C -0.14 -0.82 8.47 37.15 0.31 -0.50 16 26 C -0.12 -0.87 4.21 -26.70 -0.11 -0.98 16 27 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.39 4.89 6.18 -40.82 -0.25 4.64 16 39 H 0.39 3.33 8.62 -40.82 -0.35 2.98 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.56 4.81 -51.93 -0.25 0.31 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 53 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -31.18 395.74 -9.71 -40.89 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -9.93 Total: 3.27 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.92 Total: -8.83 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.11 Total: -45.83 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.18 -9.71 -40.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355259607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.902 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds