Wall clock time and date at job start Tue Mar 31 2020 10:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47144 * 239.99474 * 2 1 3 5 5 C 1.50699 * 109.46690 * 60.00483 * 4 2 1 6 6 H 1.07995 * 120.00267 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99393 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00563 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99546 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47283 * 89.99712 * 9 7 5 11 11 H 1.48504 * 109.46832 * 209.99699 * 9 7 5 12 12 H 1.48500 * 109.47182 * 329.99819 * 9 7 5 13 13 C 1.53008 * 109.46964 * 119.99463 * 2 1 3 14 14 N 1.46504 * 109.47219 * 300.00478 * 13 2 1 15 15 C 1.34774 * 119.99530 * 180.02562 * 14 13 2 16 16 O 1.21581 * 120.00611 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99580 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99787 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47217 * 34.99630 * 18 17 15 20 20 C 1.53002 * 109.47030 * 274.99395 * 18 17 15 21 21 C 1.52997 * 109.46965 * 179.97438 * 20 18 17 22 22 C 1.53005 * 109.46733 * 60.00506 * 21 20 18 23 23 C 1.52999 * 109.47159 * 299.99162 * 22 21 20 24 24 C 1.52997 * 109.47317 * 300.00546 * 23 22 21 25 25 C 1.52992 * 109.46961 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.46941 * 154.99599 * 18 17 15 27 27 H 1.08998 * 109.46814 * 300.00294 * 1 2 3 28 28 H 1.08999 * 109.46557 * 60.00198 * 1 2 3 29 29 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46950 * 300.00128 * 3 2 1 32 32 H 1.09006 * 109.47114 * 59.99589 * 3 2 1 33 33 H 1.09003 * 109.47021 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47075 * 300.00331 * 4 2 1 35 35 H 0.96994 * 120.00223 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47009 * 179.97438 * 13 2 1 37 37 H 1.09009 * 109.46810 * 60.00128 * 13 2 1 38 38 H 0.96996 * 119.99640 * 359.97438 * 14 13 2 39 39 H 0.96997 * 119.99625 * 359.97438 * 17 15 14 40 40 H 1.09000 * 109.47312 * 300.00176 * 20 18 17 41 41 H 1.09004 * 109.46930 * 60.00232 * 20 18 17 42 42 H 1.09001 * 109.46989 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47530 * 300.00569 * 21 20 18 44 44 H 1.09002 * 109.46935 * 179.97438 * 22 21 20 45 45 H 1.09000 * 109.47360 * 59.99776 * 22 21 20 46 46 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 47 47 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.47261 * 59.99813 * 24 23 22 49 49 H 1.09001 * 109.47066 * 180.02562 * 25 23 22 50 50 H 1.08996 * 109.47747 * 300.00196 * 25 23 22 51 51 H 1.09002 * 109.47103 * 60.00608 * 25 23 22 52 52 H 1.09000 * 109.47140 * 59.99984 * 26 18 17 53 53 H 1.09001 * 109.47375 * 299.99966 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2253 1.4394 -5.6619 11 1 1.0820 -0.5817 -6.3610 12 1 -0.0607 1.0354 -4.9610 13 6 2.0401 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4455 15 6 1.8777 -0.4907 3.6696 16 8 2.5767 -1.4791 3.7813 17 7 1.4279 0.1444 4.7701 18 6 1.7827 -0.3554 6.1006 19 1 2.7936 -0.7623 6.0782 20 6 0.7998 -1.4535 6.5117 21 6 1.1708 -1.9759 7.9011 22 6 1.1055 -0.8287 8.9114 23 6 2.0884 0.2694 8.5004 24 6 3.5073 -0.3020 8.4684 25 6 2.0236 1.4162 9.5110 26 6 1.7171 0.7920 7.1106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1301 -0.7209 -1.2494 34 1 1.6767 -1.7490 -1.2491 35 1 2.8608 -1.8832 -4.7334 36 1 3.1300 -0.7216 1.2492 37 1 1.6767 -1.7489 1.2494 38 1 0.9942 0.7583 2.3564 39 1 0.8699 0.9328 4.6809 40 1 -0.2111 -1.0465 6.5341 41 1 0.8466 -2.2709 5.7922 42 1 0.4703 -2.7579 8.1942 43 1 2.1816 -2.3829 7.8783 44 1 1.3694 -1.2010 9.9013 45 1 0.0946 -0.4217 8.9342 46 1 3.7716 -0.6742 9.4582 47 1 4.2075 0.4802 8.1751 48 1 3.5538 -1.1193 7.7485 49 1 2.7235 2.1987 9.2179 50 1 1.0129 1.8234 9.5342 51 1 2.2881 1.0437 10.5006 52 1 0.7061 1.1990 7.1330 53 1 2.4173 1.5744 6.8177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355259607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:03 Heat of formation + Delta-G solvation = -96.346903 kcal Electronic energy + Delta-G solvation = -26715.507849 eV Core-core repulsion = 23198.420581 eV Total energy + Delta-G solvation = -3517.087268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44869 -40.18676 -38.67162 -35.71187 -35.21906 -33.99190 -33.31895 -30.53898 -29.00848 -28.19132 -27.94804 -27.39650 -27.22035 -24.91789 -23.34031 -22.40169 -21.58984 -20.26368 -19.46586 -18.71065 -18.36155 -17.41602 -16.57294 -16.55038 -16.11654 -15.73760 -15.57953 -15.39813 -15.19821 -15.00808 -14.63737 -14.42661 -14.33170 -14.14712 -13.92781 -13.76248 -13.48191 -12.92818 -12.86366 -12.75068 -12.71550 -12.58526 -12.41629 -12.32822 -12.31163 -12.21667 -12.07982 -11.96632 -11.84715 -11.57787 -11.52383 -11.19934 -11.10853 -10.98946 -10.92198 -10.83134 -10.50627 -10.28009 -9.69804 -8.13009 -6.20911 1.43056 1.43682 1.53996 1.75109 2.20115 2.45009 3.21309 3.33621 3.67858 3.77381 3.93899 3.99587 4.10414 4.15613 4.19423 4.24188 4.38964 4.44024 4.49341 4.57740 4.70384 4.73778 4.74809 4.78422 4.81950 4.86660 4.98179 4.98646 5.08007 5.09514 5.11247 5.13635 5.14369 5.17011 5.23080 5.27507 5.38283 5.41749 5.45952 5.50295 5.51144 5.51213 5.55223 5.60501 5.63515 5.67366 5.81763 5.90857 6.07523 6.31902 6.94138 7.17359 7.46703 7.64705 8.99589 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036655 B = 0.002252 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.695300 B =12427.890137 C =12591.855637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.163 3.837 14 N -0.724 5.724 15 C 0.697 3.303 16 O -0.641 6.641 17 N -0.729 5.729 18 C 0.162 3.838 19 H 0.062 0.938 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.104 4.104 23 C -0.058 4.058 24 C -0.150 4.150 25 C -0.137 4.137 26 C -0.107 4.107 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.056 0.944 32 H 0.070 0.930 33 H -0.015 1.015 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.409 0.591 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.055 0.945 50 H 0.063 0.937 51 H 0.061 0.939 52 H 0.085 0.915 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 8.856 28.441 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.177 4.177 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.038 3.962 14 N -0.381 5.381 15 C 0.397 3.603 16 O -0.523 6.523 17 N -0.384 5.384 18 C 0.057 3.943 19 H 0.080 0.920 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.141 4.141 23 C -0.059 4.059 24 C -0.207 4.207 25 C -0.194 4.194 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.247 0.753 39 H 0.247 0.753 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.104 0.896 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.400 7.874 28.412 29.973 hybrid contribution -0.146 0.172 -1.608 1.624 sum -5.546 8.046 26.804 28.529 Atomic orbital electron populations 1.21681 0.93544 1.00885 1.01623 1.20699 0.96718 0.96314 0.92593 1.21682 0.99838 0.94577 1.01651 1.18982 0.94275 0.94221 0.92410 1.21584 1.30372 1.12036 0.90985 0.90827 1.25978 0.95740 0.95881 1.02804 1.70125 1.38854 1.24985 1.24069 0.85521 0.79195 0.78069 0.78700 1.20154 1.21654 1.18261 1.21022 0.97306 0.94864 0.83053 1.45013 1.56232 1.33378 1.03479 1.16210 0.80077 0.82654 0.81392 1.90882 1.45018 1.29756 1.86656 1.45074 1.56271 1.33009 1.04079 1.20902 0.98374 0.94983 0.80019 0.91986 1.21888 0.99701 0.97777 0.97065 1.21532 1.01638 0.98556 0.93823 1.21607 0.99502 0.94619 0.98385 1.20488 0.95248 0.95965 0.94212 1.22021 0.96020 1.00728 1.01906 1.21818 1.02334 0.97015 0.98250 1.21840 1.03273 0.96145 0.93203 0.91157 0.92516 0.94591 0.94567 0.92488 0.91138 0.99638 0.99640 0.93205 0.94131 0.94178 0.75290 0.75337 0.90720 0.94746 0.91257 0.92526 0.90948 0.90857 0.91831 0.92882 0.93518 0.92571 0.91776 0.92023 0.89612 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.53 7.65 25.60 0.20 -27.33 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 9 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 C 0.16 6.03 4.56 86.38 0.39 6.43 16 14 N -0.72 -20.66 4.96 -478.51 -2.37 -23.03 16 15 C 0.70 21.44 8.53 179.05 1.53 22.97 16 16 O -0.64 -26.35 16.01 -3.97 -0.06 -26.42 16 17 N -0.73 -15.20 5.08 -457.82 -2.33 -17.53 16 18 C 0.16 3.18 2.18 44.99 0.10 3.28 16 19 H 0.06 1.61 5.86 -2.39 -0.01 1.60 16 20 C -0.13 -2.42 5.49 30.59 0.17 -2.26 16 21 C -0.12 -1.81 5.65 30.59 0.17 -1.64 16 22 C -0.10 -1.14 4.73 30.60 0.14 -1.00 16 23 C -0.06 -0.67 0.77 -52.17 -0.04 -0.71 16 24 C -0.15 -2.09 7.78 71.98 0.56 -1.53 16 25 C -0.14 -1.17 8.47 71.98 0.61 -0.56 16 26 C -0.11 -1.35 4.21 30.61 0.13 -1.22 16 27 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 28 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 32 H 0.07 1.77 6.86 -2.38 -0.02 1.75 16 33 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.41 8.81 6.18 -92.71 -0.57 8.24 16 39 H 0.41 5.62 8.62 -92.71 -0.80 4.82 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 0.83 4.81 -2.38 -0.01 0.82 16 49 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.49 395.74 2.73 -68.76 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.49 Total: 20.54 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.67 Total: -10.75 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.42 Total: -97.90 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.06 Total: -26.42 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.49 2.73 -68.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355259607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.586 kcal (2) G-P(sol) polarization free energy of solvation -71.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds