Wall clock time and date at job start Tue Mar 31 2020 10:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46892 * 2 1 4 4 C 1.53001 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47020 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47479 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47732 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47457 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47067 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99990 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.47018 * 125.64981 * 179.97438 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 15 15 C 1.52995 * 110.72304 * 219.52316 * 13 12 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 13 12 18 18 N 1.46505 * 111.03913 * 153.47072 * 16 13 12 19 19 C 1.36935 * 120.00217 * 161.23025 * 18 16 13 20 20 H 1.08006 * 119.99642 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00007 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47384 * 120.00033 * 23 21 19 26 26 H 1.48504 * 109.46904 * 239.99911 * 23 21 19 27 27 C 1.47426 * 125.64500 * 359.95253 * 11 9 8 28 28 H 1.09009 * 109.46954 * 299.99500 * 1 2 3 29 29 H 1.08993 * 109.47567 * 59.99484 * 1 2 3 30 30 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46905 * 240.00702 * 2 1 3 32 32 H 1.09002 * 109.47305 * 120.00012 * 2 1 3 33 33 H 1.09000 * 109.46772 * 60.00621 * 3 2 1 34 34 H 1.08992 * 109.47129 * 300.00144 * 3 2 1 35 35 H 1.08996 * 109.47112 * 60.00233 * 4 3 2 36 36 H 1.09002 * 109.47305 * 300.00012 * 4 3 2 37 37 H 1.09005 * 109.47217 * 59.99956 * 5 4 3 38 38 H 1.09003 * 109.47309 * 300.00541 * 5 4 3 39 39 H 1.09005 * 109.47024 * 59.99725 * 6 5 4 40 40 H 1.09003 * 109.47199 * 300.00495 * 6 5 4 41 41 H 1.08996 * 109.46954 * 59.99909 * 7 6 5 42 42 H 1.09002 * 109.46872 * 300.00050 * 7 6 5 43 43 H 1.08996 * 109.47291 * 59.99897 * 8 7 6 44 44 H 1.09002 * 109.46942 * 299.99789 * 8 7 6 45 45 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 46 46 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 47 47 H 1.08999 * 109.47083 * 58.54334 * 15 13 12 48 48 H 1.09002 * 109.47293 * 178.54343 * 15 13 12 49 49 H 1.09000 * 109.47062 * 298.54438 * 15 13 12 50 50 H 0.96998 * 119.99743 * 341.23259 * 18 16 13 51 51 H 0.96989 * 120.00348 * 180.02562 * 22 21 19 52 52 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 53 53 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 6 6.1199 4.3277 0.0000 8 6 7.6499 4.3277 -0.0019 9 6 8.1522 5.7486 0.0000 10 8 7.3640 6.6704 0.0021 11 7 9.4773 5.9949 -0.0018 12 6 10.1013 7.3261 -0.0008 13 6 11.6304 7.1190 0.0266 14 1 12.0446 7.1698 -0.9803 15 6 12.2995 8.1468 0.9414 16 6 11.7739 5.6849 0.6077 17 1 11.7167 5.6989 1.6961 18 7 13.0188 5.0572 0.1576 19 6 13.5262 3.9802 0.8341 20 1 13.0089 3.5937 1.6999 21 6 14.7060 3.3858 0.4079 22 7 15.3367 3.8571 -0.6468 23 14 15.3978 1.9162 1.3304 24 1 14.5067 1.5834 2.4708 25 1 15.4842 0.7517 0.4130 26 1 16.7528 2.2455 1.8412 27 6 10.5409 4.9741 -0.0046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9290 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 3.7170 3.3984 0.8905 38 1 3.7162 3.3995 -0.8895 39 1 5.9725 2.3720 -0.8920 40 1 5.9740 2.3706 0.8880 41 1 5.7574 4.8404 0.8909 42 1 5.7558 4.8425 -0.8891 43 1 8.0122 3.8151 -0.8930 44 1 8.0144 3.8127 0.8869 45 1 9.8169 7.8695 -0.9019 46 1 9.7867 7.8823 0.8822 47 1 11.8927 8.0561 1.9485 48 1 13.3742 7.9661 0.9660 49 1 12.1084 9.1503 0.5613 50 1 13.4836 5.4045 -0.6197 51 1 16.1609 3.4415 -0.9449 52 1 10.2504 4.1218 0.6097 53 1 10.7541 4.6512 -1.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216520249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:37 Heat of formation + Delta-G solvation = -75.826411 kcal Electronic energy + Delta-G solvation = -25315.876505 eV Core-core repulsion = 21799.679072 eV Total energy + Delta-G solvation = -3516.197433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.85361 -37.75202 -37.00199 -34.97143 -34.08442 -32.65238 -31.97106 -30.74470 -28.83274 -27.51812 -26.44786 -24.73672 -23.95444 -22.19523 -21.42642 -21.23025 -20.86842 -19.90014 -18.83496 -17.20456 -16.68551 -16.46541 -16.05835 -15.53182 -15.13726 -14.70324 -14.32032 -14.13854 -13.87025 -13.70988 -13.59437 -13.12816 -13.03930 -12.92024 -12.89351 -12.66851 -12.40354 -12.18047 -11.90526 -11.81188 -11.67712 -11.61639 -11.34170 -11.14150 -11.07889 -11.06776 -11.01340 -10.78031 -10.76089 -10.63318 -10.59396 -10.53947 -10.25195 -9.94318 -9.82194 -9.58412 -9.05404 -8.32673 -7.12231 -5.89011 -3.19856 2.87000 3.25635 3.36195 3.42671 3.44422 4.33943 4.47891 4.57879 4.67620 4.72857 4.80903 4.88401 4.95820 5.03359 5.10792 5.12315 5.20596 5.27283 5.28410 5.40419 5.43381 5.51298 5.53115 5.57574 5.60720 5.63013 5.67372 5.75295 5.79390 5.79968 5.81201 5.82134 5.84259 5.93191 5.97146 6.00069 6.02307 6.12396 6.19288 6.23004 6.24321 6.32019 6.35663 6.44693 6.53600 6.61123 6.85019 7.60019 7.82643 8.28190 8.40734 9.40625 9.94306 10.29362 11.32944 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002254 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.702071 B =12418.859978 C =14454.187562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.102 4.102 8 C -0.136 4.136 9 C 0.524 3.476 10 O -0.558 6.558 11 N -0.615 5.615 12 C 0.116 3.884 13 C -0.114 4.114 14 H 0.084 0.916 15 C -0.134 4.134 16 C 0.177 3.823 17 H 0.065 0.935 18 N -0.711 5.711 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.073 3.927 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.387 0.613 51 H 0.256 0.744 52 H 0.069 0.931 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.723 -1.697 0.906 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.140 4.140 8 C -0.176 4.176 9 C 0.313 3.687 10 O -0.437 6.437 11 N -0.349 5.349 12 C -0.007 4.007 13 C -0.133 4.133 14 H 0.102 0.898 15 C -0.191 4.191 16 C 0.065 3.935 17 H 0.083 0.917 18 N -0.351 5.351 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.053 4.053 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.222 0.778 51 H 0.066 0.934 52 H 0.088 0.912 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.136 -1.377 1.024 22.202 hybrid contribution 0.716 -0.843 0.104 1.111 sum -21.420 -2.220 1.128 21.564 Atomic orbital electron populations 1.21784 0.96045 1.01488 1.01761 1.21553 0.95734 0.97130 1.01983 1.21638 0.95660 0.96563 1.02002 1.21624 0.95124 0.97050 1.02070 1.21588 0.95445 0.96521 1.02129 1.21627 0.95333 0.96695 1.02194 1.21334 0.92957 0.96373 1.03320 1.21658 0.97508 0.93963 1.04494 1.20415 0.80609 0.91659 0.75984 1.90653 1.54746 1.46843 1.51436 1.48595 1.05235 1.08861 1.72176 1.21942 0.92602 0.84818 1.01351 1.22518 0.92868 0.97090 1.00855 0.89780 1.21653 1.01586 0.97255 0.98626 1.21421 0.86200 0.89038 0.96891 0.91746 1.42301 1.22446 1.35544 1.34806 1.19276 1.04550 1.05531 1.08493 0.90932 1.24763 0.97876 0.99740 0.98096 1.69663 1.18954 1.42915 1.26066 0.86126 0.78830 0.82350 0.78897 1.20463 1.21770 1.21783 1.23510 0.88380 0.91526 1.01909 0.92812 0.92805 0.92893 0.92097 0.92095 0.92095 0.92101 0.92038 0.92042 0.92019 0.92031 0.91905 0.91904 0.91401 0.91427 0.89015 0.88990 0.92151 0.91776 0.92850 0.91431 0.93184 0.77845 0.93378 0.91235 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.84 5.22 -26.73 -0.14 -0.98 16 4 C -0.12 -0.91 5.21 -26.73 -0.14 -1.04 16 5 C -0.12 -0.99 5.21 -26.74 -0.14 -1.13 16 6 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 7 C -0.10 -1.15 4.50 -26.73 -0.12 -1.27 16 8 C -0.14 -1.69 4.71 -27.88 -0.13 -1.82 16 9 C 0.52 8.38 7.85 -10.98 -0.09 8.29 16 10 O -0.56 -10.48 16.31 5.56 0.09 -10.39 16 11 N -0.62 -9.84 3.33 -170.50 -0.57 -10.41 16 12 C 0.12 1.77 6.46 -3.07 -0.02 1.75 16 13 C -0.11 -1.78 3.19 -88.65 -0.28 -2.06 16 14 H 0.08 1.35 8.00 -51.93 -0.42 0.94 16 15 C -0.13 -1.89 9.14 37.15 0.34 -1.55 16 16 C 0.18 3.25 3.14 -65.63 -0.21 3.04 16 17 H 0.06 1.22 8.03 -51.93 -0.42 0.81 16 18 N -0.71 -16.36 5.28 -51.20 -0.27 -16.63 16 19 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 23 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.07 1.21 6.39 -2.51 -0.02 1.20 16 28 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.96 7.82 -51.93 -0.41 0.56 16 47 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.39 9.54 7.72 -40.82 -0.31 9.22 16 51 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 52 H 0.07 1.12 7.48 -51.93 -0.39 0.73 16 53 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 420.31 15.07 6.33 6.33 Total: -1.00 -29.22 420.31 -10.60 -39.82 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -10.77 Total: 6.05 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.12 Total: -5.17 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.11 Total: -52.96 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -29.22 -10.60 -39.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216520249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.010 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds