Wall clock time and date at job start Tue Mar 31 2020 10:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46892 * 2 1 4 4 C 1.53001 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47020 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47479 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47732 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47457 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47067 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99990 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.47018 * 125.64981 * 179.97438 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 15 15 C 1.52995 * 110.72304 * 219.52316 * 13 12 11 16 16 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 17 17 H 1.09000 * 110.89538 * 277.26533 * 16 13 12 18 18 N 1.46505 * 111.03913 * 153.47072 * 16 13 12 19 19 C 1.36935 * 120.00217 * 161.23025 * 18 16 13 20 20 H 1.08006 * 119.99642 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00007 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47384 * 120.00033 * 23 21 19 26 26 H 1.48504 * 109.46904 * 239.99911 * 23 21 19 27 27 C 1.47426 * 125.64500 * 359.95253 * 11 9 8 28 28 H 1.09009 * 109.46954 * 299.99500 * 1 2 3 29 29 H 1.08993 * 109.47567 * 59.99484 * 1 2 3 30 30 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46905 * 240.00702 * 2 1 3 32 32 H 1.09002 * 109.47305 * 120.00012 * 2 1 3 33 33 H 1.09000 * 109.46772 * 60.00621 * 3 2 1 34 34 H 1.08992 * 109.47129 * 300.00144 * 3 2 1 35 35 H 1.08996 * 109.47112 * 60.00233 * 4 3 2 36 36 H 1.09002 * 109.47305 * 300.00012 * 4 3 2 37 37 H 1.09005 * 109.47217 * 59.99956 * 5 4 3 38 38 H 1.09003 * 109.47309 * 300.00541 * 5 4 3 39 39 H 1.09005 * 109.47024 * 59.99725 * 6 5 4 40 40 H 1.09003 * 109.47199 * 300.00495 * 6 5 4 41 41 H 1.08996 * 109.46954 * 59.99909 * 7 6 5 42 42 H 1.09002 * 109.46872 * 300.00050 * 7 6 5 43 43 H 1.08996 * 109.47291 * 59.99897 * 8 7 6 44 44 H 1.09002 * 109.46942 * 299.99789 * 8 7 6 45 45 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 46 46 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 47 47 H 1.08999 * 109.47083 * 58.54334 * 15 13 12 48 48 H 1.09002 * 109.47293 * 178.54343 * 15 13 12 49 49 H 1.09000 * 109.47062 * 298.54438 * 15 13 12 50 50 H 0.96998 * 119.99743 * 341.23259 * 18 16 13 51 51 H 0.96989 * 120.00348 * 180.02562 * 22 21 19 52 52 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 53 53 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 6 6.1199 4.3277 0.0000 8 6 7.6499 4.3277 -0.0019 9 6 8.1522 5.7486 0.0000 10 8 7.3640 6.6704 0.0021 11 7 9.4773 5.9949 -0.0018 12 6 10.1013 7.3261 -0.0008 13 6 11.6304 7.1190 0.0266 14 1 12.0446 7.1698 -0.9803 15 6 12.2995 8.1468 0.9414 16 6 11.7739 5.6849 0.6077 17 1 11.7167 5.6989 1.6961 18 7 13.0188 5.0572 0.1576 19 6 13.5262 3.9802 0.8341 20 1 13.0089 3.5937 1.6999 21 6 14.7060 3.3858 0.4079 22 7 15.3367 3.8571 -0.6468 23 14 15.3978 1.9162 1.3304 24 1 14.5067 1.5834 2.4708 25 1 15.4842 0.7517 0.4130 26 1 16.7528 2.2455 1.8412 27 6 10.5409 4.9741 -0.0046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9290 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 3.7170 3.3984 0.8905 38 1 3.7162 3.3995 -0.8895 39 1 5.9725 2.3720 -0.8920 40 1 5.9740 2.3706 0.8880 41 1 5.7574 4.8404 0.8909 42 1 5.7558 4.8425 -0.8891 43 1 8.0122 3.8151 -0.8930 44 1 8.0144 3.8127 0.8869 45 1 9.8169 7.8695 -0.9019 46 1 9.7867 7.8823 0.8822 47 1 11.8927 8.0561 1.9485 48 1 13.3742 7.9661 0.9660 49 1 12.1084 9.1503 0.5613 50 1 13.4836 5.4045 -0.6197 51 1 16.1609 3.4415 -0.9449 52 1 10.2504 4.1218 0.6097 53 1 10.7541 4.6512 -1.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216520249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:37 Heat of formation + Delta-G solvation = -89.554674 kcal Electronic energy + Delta-G solvation = -25316.471808 eV Core-core repulsion = 21799.679072 eV Total energy + Delta-G solvation = -3516.792735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16318 -39.07430 -37.70412 -35.87709 -35.68575 -33.99475 -32.86631 -32.42411 -29.62957 -29.09768 -27.49415 -25.93453 -25.42586 -23.20999 -22.55735 -21.88787 -21.58563 -21.29294 -20.08530 -19.09026 -17.97669 -17.51211 -17.03918 -16.59757 -16.51511 -15.92892 -15.48909 -15.33213 -14.83854 -14.66346 -14.57173 -14.51077 -14.42760 -14.23958 -13.92858 -13.54416 -13.35207 -13.17515 -13.07791 -12.89274 -12.86332 -12.83345 -12.51904 -12.38362 -12.19200 -12.09878 -11.99232 -11.98692 -11.76057 -11.72256 -11.69158 -11.42046 -11.37438 -11.29621 -11.25270 -10.98326 -10.80431 -9.68090 -9.02982 -7.93162 -5.22785 1.50719 1.52151 1.60435 1.61018 2.00349 2.58076 3.36868 3.39581 3.70331 3.78536 3.84040 3.95272 3.98186 4.09407 4.10660 4.17569 4.20600 4.32679 4.37924 4.39709 4.47359 4.55770 4.58609 4.60659 4.63559 4.72165 4.79764 4.85814 4.87795 4.90052 4.91837 4.92803 5.06269 5.09948 5.12586 5.13990 5.14564 5.16265 5.22615 5.27539 5.34630 5.36753 5.37416 5.45171 5.48316 5.54184 5.57268 5.57751 6.27693 6.52888 7.12800 7.35757 8.06833 8.31319 9.29790 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002254 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.702071 B =12418.859978 C =14454.187562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.096 4.096 8 C -0.132 4.132 9 C 0.520 3.480 10 O -0.587 6.587 11 N -0.616 5.616 12 C 0.117 3.883 13 C -0.104 4.104 14 H 0.078 0.922 15 C -0.129 4.129 16 C 0.170 3.830 17 H 0.062 0.938 18 N -0.720 5.720 19 C -0.239 4.239 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.966 5.966 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.298 1.298 27 C 0.086 3.914 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.073 0.927 50 H 0.377 0.623 51 H 0.250 0.750 52 H 0.080 0.920 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.984 -2.374 1.698 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.134 4.134 8 C -0.172 4.172 9 C 0.311 3.689 10 O -0.469 6.469 11 N -0.349 5.349 12 C -0.006 4.006 13 C -0.123 4.123 14 H 0.097 0.903 15 C -0.186 4.186 16 C 0.059 3.941 17 H 0.080 0.920 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.225 1.225 27 C -0.039 4.039 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.209 0.791 51 H 0.059 0.941 52 H 0.098 0.902 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.444 -2.047 1.844 23.605 hybrid contribution 1.032 -0.545 -0.130 1.174 sum -22.411 -2.592 1.714 22.626 Atomic orbital electron populations 1.21789 0.95643 1.01855 1.01833 1.21554 0.96126 0.96742 1.02003 1.21621 0.95308 0.96907 1.01901 1.21589 0.95438 0.96353 1.02153 1.21565 0.94928 0.97105 1.01920 1.21579 0.95767 0.95133 1.02742 1.21277 0.92225 0.97623 1.02255 1.21725 0.98101 0.91661 1.05665 1.21051 0.80102 0.92814 0.74943 1.90640 1.55281 1.48150 1.52809 1.48647 1.05321 1.08859 1.72100 1.21959 0.91952 0.84784 1.01883 1.22432 0.93415 0.95785 1.00690 0.90323 1.21614 1.00182 0.98045 0.98778 1.21571 0.85008 0.90634 0.96841 0.91974 1.42395 1.23924 1.35282 1.34346 1.19638 1.04001 1.05393 1.08034 0.90189 1.25483 0.98810 1.02601 0.99292 1.69804 1.19376 1.44511 1.27937 0.85165 0.77851 0.79256 0.78018 1.18862 1.22295 1.22533 1.23183 0.87738 0.91644 1.01361 0.92743 0.92750 0.92405 0.92086 0.92062 0.92187 0.92222 0.91954 0.91916 0.92231 0.92299 0.91366 0.91275 0.92438 0.92569 0.87812 0.87571 0.91707 0.91165 0.92205 0.93188 0.90835 0.79080 0.94081 0.90197 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.13 -1.48 5.93 30.60 0.18 -1.30 16 3 C -0.12 -1.51 5.22 30.60 0.16 -1.35 16 4 C -0.12 -1.58 5.21 30.59 0.16 -1.42 16 5 C -0.12 -1.79 5.21 30.59 0.16 -1.63 16 6 C -0.11 -1.88 5.21 30.59 0.16 -1.72 16 7 C -0.10 -2.03 4.50 30.59 0.14 -1.89 16 8 C -0.13 -3.01 4.71 29.85 0.14 -2.87 16 9 C 0.52 15.89 7.85 87.66 0.69 16.58 16 10 O -0.59 -21.56 16.31 -3.03 -0.05 -21.61 16 11 N -0.62 -18.76 3.33 -811.74 -2.70 -21.46 16 12 C 0.12 3.39 6.46 86.73 0.56 3.95 16 13 C -0.10 -3.12 3.19 -9.52 -0.03 -3.15 16 14 H 0.08 2.48 8.00 -2.39 -0.02 2.46 16 15 C -0.13 -3.46 9.14 71.98 0.66 -2.80 16 16 C 0.17 6.07 3.14 46.48 0.15 6.21 16 17 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 18 N -0.72 -32.93 5.28 -315.91 -1.67 -34.60 16 19 C -0.24 -12.17 9.98 84.03 0.84 -11.33 16 20 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 22 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 23 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.09 2.76 6.39 86.86 0.56 3.31 16 28 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 42 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.11 2.15 7.85 -2.39 -0.02 2.13 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 47 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.38 18.73 7.72 -92.71 -0.72 18.02 16 51 H 0.25 14.22 8.31 -92.72 -0.77 13.45 16 52 H 0.08 2.39 7.48 -2.39 -0.02 2.37 16 53 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -61.47 420.31 3.70 -57.77 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.11 Total: 33.56 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.69 Total: -3.60 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.08 Total: -111.90 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -61.47 3.70 -57.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216520249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.786 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds