Wall clock time and date at job start Tue Mar 31 2020 10:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 C 1.53002 * 109.46831 * 120.00238 * 2 1 3 5 5 C 1.52998 * 109.46953 * 240.00084 * 2 1 3 6 6 C 1.52995 * 109.47487 * 59.99988 * 5 2 1 7 7 C 1.53001 * 109.47256 * 179.97438 * 6 5 2 8 8 C 1.53002 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47014 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99998 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99892 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99577 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.50246 * 34.99901 * 12 11 9 14 14 C 1.53039 * 109.49432 * 155.06800 * 12 11 9 15 15 C 1.53044 * 109.53832 * 181.31935 * 14 12 11 16 16 C 1.53197 * 109.30548 * 298.63090 * 15 14 12 17 17 N 1.46924 * 108.77775 * 54.63646 * 16 15 14 18 18 C 1.36939 * 120.62885 * 126.38691 * 17 16 15 19 19 H 1.08003 * 119.99896 * 207.67901 * 18 17 16 20 20 C 1.38814 * 119.99824 * 27.68580 * 18 17 16 21 21 N 1.31615 * 120.00072 * 17.35574 * 20 18 17 22 22 Si 1.86808 * 119.99527 * 197.35690 * 20 18 17 23 23 H 1.48492 * 109.47248 * 59.99904 * 22 20 18 24 24 H 1.48503 * 109.46675 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47100 * 299.99729 * 22 20 18 26 26 C 1.46927 * 118.76457 * 306.40865 * 17 16 15 27 27 H 1.09005 * 109.46815 * 59.99781 * 1 2 3 28 28 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47012 * 300.00309 * 1 2 3 30 30 H 1.09003 * 109.47035 * 60.00210 * 3 2 1 31 31 H 1.09007 * 109.46869 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47296 * 299.99998 * 3 2 1 33 33 H 1.08997 * 109.47251 * 59.99994 * 4 2 1 34 34 H 1.08999 * 109.46775 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46553 * 299.99918 * 4 2 1 36 36 H 1.09006 * 109.47110 * 180.02562 * 5 2 1 37 37 H 1.09003 * 109.46924 * 299.99843 * 5 2 1 38 38 H 1.08996 * 109.47408 * 300.00340 * 6 5 2 39 39 H 1.09004 * 109.46881 * 60.00465 * 6 5 2 40 40 H 1.08999 * 109.47119 * 299.99903 * 7 6 5 41 41 H 1.08997 * 109.47156 * 60.00307 * 7 6 5 42 42 H 1.08999 * 109.46775 * 299.99706 * 8 7 6 43 43 H 1.08997 * 109.47251 * 59.99957 * 8 7 6 44 44 H 0.96989 * 119.99991 * 0.02562 * 11 9 8 45 45 H 1.09006 * 109.46079 * 301.32947 * 14 12 11 46 46 H 1.08998 * 109.46632 * 61.29342 * 14 12 11 47 47 H 1.08999 * 109.50038 * 58.57722 * 15 14 12 48 48 H 1.09002 * 109.49740 * 178.68544 * 15 14 12 49 49 H 1.09000 * 109.58396 * 174.42326 * 16 15 14 50 50 H 1.09000 * 109.58634 * 294.70316 * 16 15 14 51 51 H 0.97003 * 119.99828 * 180.02562 * 21 20 18 52 52 H 1.08998 * 109.56518 * 293.78524 * 26 17 16 53 53 H 1.08999 * 109.61484 * 173.35731 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 2.0400 -0.7212 -1.2492 6 6 1.5301 0.0000 -2.4985 7 6 2.0406 -0.7210 -3.7477 8 6 1.5311 0.0007 -4.9970 9 6 2.0334 -0.7097 -6.2274 10 8 2.7299 -1.6964 -6.1161 11 7 1.7078 -0.2493 -7.4515 12 6 2.1957 -0.9403 -8.6477 13 1 2.2322 -2.0131 -8.4587 14 6 1.2527 -0.6598 -9.8199 15 6 1.7432 -1.4078 -11.0617 16 6 3.1417 -0.9063 -11.4355 17 7 4.0200 -1.0385 -10.2652 18 6 5.2083 -1.7129 -10.3574 19 1 5.6256 -2.1933 -9.4847 20 6 5.8764 -1.7790 -11.5723 21 7 5.5734 -0.9361 -12.5367 22 14 7.2056 -3.0643 -11.8386 23 1 6.6227 -4.4203 -11.6754 24 1 7.7603 -2.9261 -13.2091 25 1 8.2899 -2.8686 -10.8430 26 6 3.5996 -0.4341 -8.9937 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -0.2074 2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 1.6767 -1.7489 -1.2492 38 1 0.4401 0.0001 -2.4985 39 1 1.8935 1.0276 -2.4985 40 1 3.1306 -0.7206 -3.7475 41 1 1.6776 -1.7487 -3.7480 42 1 0.4411 0.0006 -4.9974 43 1 1.8944 1.0283 -4.9965 44 1 1.1505 0.5395 -7.5405 45 1 0.2477 -0.9973 -9.5663 46 1 1.2353 0.4107 -10.0240 47 1 1.7844 -2.4763 -10.8503 48 1 1.0582 -1.2263 -11.8900 49 1 3.5362 -1.5032 -12.2578 50 1 3.0862 0.1397 -11.7371 51 1 6.0400 -0.9825 -13.3858 52 1 3.5824 0.6512 -9.0935 53 1 4.2956 -0.7196 -8.2050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494320249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:05 Heat of formation + Delta-G solvation = -80.363965 kcal Electronic energy + Delta-G solvation = -26059.626788 eV Core-core repulsion = 22543.232592 eV Total energy + Delta-G solvation = -3516.394196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95675 -39.21658 -38.84058 -35.94591 -35.13597 -34.11774 -32.35724 -31.12014 -29.63242 -28.10817 -28.07491 -27.27589 -25.69193 -23.90122 -23.52739 -22.07075 -21.33285 -20.79602 -19.40845 -18.73814 -17.85409 -17.17729 -16.89808 -16.63264 -15.97183 -15.73508 -15.64106 -15.34794 -15.18257 -15.00958 -14.75802 -14.60980 -14.20770 -14.05652 -13.70740 -13.49879 -13.44170 -13.12609 -13.02381 -12.74795 -12.71885 -12.56772 -12.50166 -12.45072 -12.23245 -12.16633 -12.11032 -11.98657 -11.76282 -11.58103 -11.56846 -11.31839 -11.25176 -11.21484 -11.16530 -10.70897 -10.62248 -10.06409 -8.71409 -7.92676 -5.38061 1.42345 1.44801 1.52352 1.74640 2.25102 2.50003 3.20942 3.65818 3.78219 3.83746 3.92390 3.96156 4.01569 4.10508 4.16422 4.21060 4.26764 4.46429 4.52489 4.53549 4.60094 4.67803 4.76882 4.80076 4.83871 4.84915 4.88608 4.91176 4.97846 5.00008 5.01552 5.02120 5.11698 5.12722 5.15736 5.19872 5.22019 5.26976 5.29788 5.37199 5.45137 5.47429 5.49586 5.60398 5.60736 5.63773 5.64746 5.74990 6.34534 6.69455 7.10634 7.41030 7.80574 8.30175 9.12726 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.002260 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.465913 B =12388.776221 C =13285.146439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.103 4.103 8 C -0.127 4.127 9 C 0.499 3.501 10 O -0.595 6.595 11 N -0.711 5.711 12 C 0.140 3.860 13 H 0.052 0.948 14 C -0.103 4.103 15 C -0.131 4.131 16 C 0.171 3.829 17 N -0.608 5.608 18 C -0.270 4.270 19 H 0.051 0.949 20 C -0.044 4.044 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.279 1.279 26 C 0.145 3.855 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.417 0.583 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.006 0.994 51 H 0.253 0.747 52 H 0.021 0.979 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 6.598 22.022 28.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.201 4.201 4 C -0.200 4.200 5 C -0.148 4.148 6 C -0.149 4.149 7 C -0.141 4.141 8 C -0.166 4.166 9 C 0.288 3.712 10 O -0.475 6.475 11 N -0.363 5.363 12 C 0.033 3.967 13 H 0.070 0.930 14 C -0.141 4.141 15 C -0.170 4.170 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.400 4.400 19 H 0.069 0.931 20 C -0.240 4.240 21 N -0.574 5.574 22 Si 0.793 3.207 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.205 1.205 26 C 0.018 3.982 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.254 0.746 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.073 0.927 50 H 0.024 0.976 51 H 0.062 0.938 52 H 0.039 0.961 53 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.429 5.929 21.944 27.473 hybrid contribution 1.171 -0.531 -0.556 1.401 sum -14.258 5.398 21.388 26.265 Atomic orbital electron populations 1.21924 0.94047 1.01743 1.02216 1.20559 0.96154 0.95738 0.94622 1.21933 1.00671 0.95249 1.02200 1.21886 1.00747 1.00161 0.97228 1.21634 1.00070 0.99036 0.94043 1.21670 1.01570 0.99583 0.92097 1.21305 1.00158 0.99133 0.93502 1.21724 1.04101 1.00987 0.89835 1.21681 0.79258 0.84187 0.86084 1.90716 1.40098 1.29153 1.87538 1.45976 1.53268 1.32277 1.04809 1.21193 0.94296 0.96136 0.85026 0.93017 1.21601 0.98107 1.01416 0.92996 1.22028 0.97531 0.99376 0.98095 1.20723 0.88137 0.97015 0.89540 1.44231 1.19436 1.62886 1.06666 1.19343 0.98876 1.25751 0.96020 0.93144 1.25730 1.00389 1.00258 0.97656 1.70158 1.45049 1.36610 1.05538 0.85375 0.79070 0.79392 0.76827 1.20595 1.21044 1.20458 1.21220 0.94378 0.94793 0.87783 0.91690 0.93026 0.92464 0.92425 0.93298 0.91742 0.92932 0.93158 0.92173 0.93066 0.92688 0.90210 0.90666 0.93800 0.93171 0.85860 0.86582 0.74615 0.89464 0.90479 0.93635 0.89645 0.92743 0.97588 0.93786 0.96074 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.12 71.98 0.58 -0.93 16 2 C -0.07 -0.87 0.80 -52.18 -0.04 -0.92 16 3 C -0.14 -1.64 8.12 71.98 0.58 -1.06 16 4 C -0.14 -1.77 8.47 71.98 0.61 -1.16 16 5 C -0.11 -1.66 4.27 30.59 0.13 -1.53 16 6 C -0.11 -1.54 4.51 30.59 0.14 -1.40 16 7 C -0.10 -2.06 4.50 30.60 0.14 -1.93 16 8 C -0.13 -2.21 5.70 29.85 0.17 -2.04 16 9 C 0.50 14.51 7.80 87.66 0.68 15.19 16 10 O -0.59 -24.37 15.65 -3.06 -0.05 -24.42 16 11 N -0.71 -18.90 5.08 -442.15 -2.25 -21.15 16 12 C 0.14 5.03 2.60 45.07 0.12 5.15 16 13 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 14 C -0.10 -3.07 5.35 30.62 0.16 -2.91 16 15 C -0.13 -4.76 6.08 30.68 0.19 -4.58 16 16 C 0.17 8.32 5.31 86.36 0.46 8.77 16 17 N -0.61 -32.50 3.00 -699.08 -2.09 -34.60 16 18 C -0.27 -16.04 9.58 84.03 0.81 -15.23 16 19 H 0.05 3.07 7.89 -2.91 -0.02 3.05 16 20 C -0.04 -2.59 4.91 84.86 0.42 -2.17 16 21 N -0.93 -55.85 11.19 21.65 0.24 -55.61 16 22 Si 0.97 47.01 29.59 68.60 2.03 49.04 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 26 C 0.15 6.62 6.09 86.36 0.53 7.14 16 27 H 0.06 0.62 6.43 -2.38 -0.02 0.60 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 39 H 0.07 0.90 6.43 -2.38 -0.02 0.89 16 40 H 0.04 1.10 8.10 -2.39 -0.02 1.08 16 41 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.42 7.38 8.60 -92.72 -0.80 6.58 16 45 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 49 H 0.05 3.00 6.04 -2.39 -0.01 2.99 16 50 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 51 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 52 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -74.41 404.72 3.60 -70.81 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.05 Total: 15.52 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.67 Total: 0.41 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.10 Total: -111.36 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.41 3.60 -70.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494320249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.556 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds