Wall clock time and date at job start Tue Mar 31 2020 09:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46771 * 2 1 4 4 C 1.53008 * 109.47128 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46768 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47219 * 304.99635 * 6 5 4 8 8 C 1.52999 * 109.46777 * 65.00476 * 6 5 4 9 9 C 1.52999 * 109.46982 * 185.06981 * 8 6 5 10 10 C 1.50704 * 109.46585 * 184.99800 * 6 5 4 11 11 O 1.21283 * 120.00061 * 266.16034 * 10 6 5 12 12 N 1.34777 * 119.99659 * 86.16772 * 10 6 5 13 13 C 1.46919 * 120.63167 * 354.62800 * 12 10 6 14 14 C 1.53626 * 108.54463 * 126.36907 * 13 12 10 15 15 C 1.53040 * 109.24201 * 54.85685 * 14 13 12 16 16 N 1.46493 * 109.46551 * 178.49229 * 15 14 13 17 17 C 1.36943 * 120.00043 * 275.06845 * 16 15 14 18 18 H 1.08001 * 119.99479 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00236 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99889 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00059 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47245 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47272 * 120.00013 * 21 19 17 24 24 H 1.48502 * 109.47037 * 240.00448 * 21 19 17 25 25 C 1.53043 * 109.53723 * 298.51444 * 15 14 13 26 26 C 1.46926 * 120.62936 * 174.91065 * 12 10 6 27 27 H 1.09003 * 109.47153 * 60.00303 * 1 2 3 28 28 H 1.09006 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47705 * 299.99758 * 1 2 3 30 30 H 1.08993 * 109.47146 * 239.99782 * 2 1 3 31 31 H 1.09003 * 109.47153 * 119.99697 * 2 1 3 32 32 H 1.09006 * 109.47257 * 60.00058 * 3 2 1 33 33 H 1.08994 * 109.47265 * 299.99856 * 3 2 1 34 34 H 1.08993 * 109.46697 * 59.99838 * 4 3 2 35 35 H 1.09007 * 109.47017 * 300.00409 * 4 3 2 36 36 H 1.09000 * 109.47308 * 59.99958 * 5 4 3 37 37 H 1.09003 * 109.47035 * 300.00099 * 5 4 3 38 38 H 1.09005 * 109.47104 * 305.06009 * 8 6 5 39 39 H 1.08996 * 109.47799 * 65.06785 * 8 6 5 40 40 H 1.08991 * 109.47703 * 174.41858 * 9 8 6 41 41 H 1.09002 * 109.46919 * 294.41764 * 9 8 6 42 42 H 1.09007 * 109.47602 * 54.41362 * 9 8 6 43 43 H 1.09003 * 109.59053 * 246.20486 * 13 12 10 44 44 H 1.09004 * 109.59045 * 6.63123 * 13 12 10 45 45 H 1.08995 * 109.63763 * 294.86824 * 14 13 12 46 46 H 1.09001 * 109.43565 * 174.71979 * 14 13 12 47 47 H 1.09004 * 109.44889 * 58.52003 * 15 14 13 48 48 H 0.96994 * 120.00650 * 95.06153 * 16 15 14 49 49 H 0.97000 * 119.99713 * 179.97438 * 20 19 17 50 50 H 1.08998 * 109.49486 * 301.41500 * 25 15 14 51 51 H 1.09004 * 109.49935 * 181.31524 * 25 15 14 52 52 H 1.09010 * 109.58573 * 353.36847 * 26 12 10 53 53 H 1.08995 * 109.58797 * 113.65449 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 0.0013 7 1 5.9726 2.2964 0.8438 8 6 6.1210 2.2746 -1.3052 9 6 7.6456 2.1583 -1.2518 10 6 6.1121 4.3007 0.1244 11 8 6.3813 4.9375 -0.8720 12 7 6.2620 4.8589 1.3420 13 6 5.8306 4.1447 2.5512 14 6 7.0122 4.0852 3.5312 15 6 7.5256 5.5036 3.7890 16 7 8.6295 5.4560 4.7509 17 6 8.3667 5.4464 6.0948 18 1 7.3456 5.4745 6.4455 19 6 9.4126 5.4007 7.0063 20 7 10.6570 5.3671 6.5788 21 14 9.0541 5.3870 8.8395 22 1 7.5857 5.4300 9.0570 23 1 9.6073 4.1480 9.4428 24 1 9.6841 6.5716 9.4760 25 6 8.0195 6.1157 2.4761 26 6 6.8544 6.1959 1.4847 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 3.7162 3.3995 0.8895 37 1 3.7169 3.3984 -0.8905 38 1 5.6856 1.2842 -1.4382 39 1 5.8344 2.9127 -2.1411 40 1 8.0014 1.6339 -2.1385 41 1 8.0851 3.1552 -1.2185 42 1 7.9367 1.6030 -0.3600 43 1 4.9971 4.6754 3.0114 44 1 5.5215 3.1332 2.2876 45 1 7.8124 3.4808 3.1040 46 1 6.6823 3.6414 4.4706 47 1 6.7180 6.1141 4.1930 48 1 9.5465 5.4311 4.4360 49 1 11.3879 5.3355 7.2158 50 1 8.8100 5.4921 2.0588 51 1 8.4065 7.1172 2.6644 52 1 7.2211 6.5383 0.5169 53 1 6.1020 6.8910 1.8571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203834607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:02 Heat of formation + Delta-G solvation = -68.312975 kcal Electronic energy + Delta-G solvation = -26815.697790 eV Core-core repulsion = 23299.826164 eV Total energy + Delta-G solvation = -3515.871626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -40.37550 -37.71964 -36.78667 -34.86353 -34.48179 -32.09349 -31.77770 -30.85303 -29.35914 -28.49458 -25.46370 -24.48843 -23.16347 -22.93324 -22.27610 -21.45298 -21.06483 -19.82213 -18.59704 -17.39582 -17.03941 -16.04433 -15.74574 -15.28012 -14.85838 -14.49745 -14.30057 -14.29965 -13.87332 -13.71144 -13.58992 -13.47307 -13.39271 -13.15312 -12.82072 -12.74632 -12.26420 -12.18585 -11.93590 -11.83060 -11.58857 -11.50520 -11.41622 -11.15720 -11.03783 -10.97504 -10.90310 -10.83577 -10.77293 -10.72009 -10.52431 -10.46553 -10.21819 -9.83435 -9.69905 -9.45627 -8.93241 -8.44683 -7.00014 -5.80006 -3.09248 2.74358 3.14319 3.40364 3.45885 3.48299 4.33609 4.49738 4.55389 4.60643 4.70358 4.75346 4.92214 4.97317 5.02983 5.18026 5.21105 5.30215 5.33424 5.35803 5.36899 5.40679 5.47057 5.49511 5.52876 5.60353 5.61895 5.63246 5.69809 5.71032 5.72111 5.83065 5.83821 5.92898 5.96310 5.97020 6.02771 6.07451 6.13049 6.20156 6.22218 6.27943 6.37405 6.39265 6.50751 6.64234 6.89146 7.02713 7.57867 7.66488 8.31920 8.38283 9.49527 10.07205 10.41799 11.42608 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.013471 B = 0.002957 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.000104 B = 9465.371126 C =10727.514178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.110 4.110 7 H 0.094 0.906 8 C -0.106 4.106 9 C -0.156 4.156 10 C 0.521 3.479 11 O -0.550 6.550 12 N -0.606 5.606 13 C 0.105 3.895 14 C -0.151 4.151 15 C 0.179 3.821 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.138 4.138 26 C 0.116 3.884 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 -8.843 -15.306 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.131 4.131 7 H 0.112 0.888 8 C -0.144 4.144 9 C -0.213 4.213 10 C 0.309 3.691 11 O -0.428 6.428 12 N -0.339 5.339 13 C -0.019 4.019 14 C -0.192 4.192 15 C 0.069 3.931 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.177 4.177 26 C -0.007 4.007 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.105 0.895 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.220 -8.474 -15.632 24.067 hybrid contribution 0.268 -0.086 1.195 1.227 sum -15.952 -8.560 -14.438 23.155 Atomic orbital electron populations 1.21785 0.96040 1.01487 1.01791 1.21537 0.95745 0.97020 1.02007 1.21626 0.95356 0.96699 1.02147 1.21668 0.95322 0.96228 1.02510 1.21538 0.92541 0.97675 1.02903 1.21473 0.96983 0.93839 1.00779 0.88826 1.21438 0.96184 1.00470 0.96313 1.21809 0.95766 1.02333 1.01387 1.20572 0.77287 0.88545 0.82666 1.90643 1.51578 1.64109 1.36437 1.48192 1.60974 1.18457 1.06257 1.22009 0.97900 0.96625 0.85322 1.22750 0.96557 1.01727 0.98150 1.20157 0.91762 0.92581 0.88596 1.42449 1.03695 1.88407 1.01930 1.19272 0.92569 1.42595 0.82548 0.91134 1.24756 0.95250 1.03003 0.97992 1.69676 0.97658 1.57593 1.33097 0.86137 0.77307 0.77198 0.85662 1.20547 1.21895 1.21876 1.22202 0.97372 1.02154 0.96003 1.21590 0.95454 0.83081 1.00563 0.92849 0.92906 0.92735 0.92128 0.91986 0.91935 0.92055 0.91475 0.91678 0.91431 0.91279 0.91259 0.90881 0.92746 0.92185 0.92901 0.91522 0.90234 0.92191 0.90742 0.93472 0.78276 0.93544 0.91907 0.90626 0.89544 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 4 C -0.12 -0.88 4.98 -26.73 -0.13 -1.01 16 5 C -0.11 -0.97 4.46 -26.73 -0.12 -1.09 16 6 C -0.11 -1.18 1.34 -91.77 -0.12 -1.30 16 7 H 0.09 0.96 6.43 -51.93 -0.33 0.62 16 8 C -0.11 -1.10 4.96 -26.73 -0.13 -1.23 16 9 C -0.16 -1.74 9.62 37.16 0.36 -1.39 16 10 C 0.52 7.36 6.09 -10.98 -0.07 7.30 16 11 O -0.55 -9.45 14.78 5.55 0.08 -9.37 16 12 N -0.61 -8.45 2.97 -172.50 -0.51 -8.96 16 13 C 0.10 1.34 5.91 -3.49 -0.02 1.32 16 14 C -0.15 -2.47 5.67 -26.39 -0.15 -2.62 16 15 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 16 N -0.72 -17.66 5.12 -53.39 -0.27 -17.94 16 17 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 26 C 0.12 1.69 6.42 -3.71 -0.02 1.66 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.47 6.46 -51.93 -0.34 0.14 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 39 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.81 7.07 -51.93 -0.37 0.45 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.85 5.18 -51.93 -0.27 0.58 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 48 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 51 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 52 H 0.09 1.31 7.04 -51.92 -0.37 0.94 16 53 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -30.70 405.17 -10.08 -40.78 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -10.26 Total: 6.72 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.92 Total: -7.19 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.06 Total: -54.04 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.70 -10.08 -40.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203834607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.536 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds