Wall clock time and date at job start Tue Mar 31 2020 10:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 H 1.08996 * 109.47613 * 305.00289 * 3 2 1 5 5 C 1.53009 * 109.46971 * 65.00066 * 3 2 1 6 6 C 1.52995 * 109.46796 * 184.99991 * 3 2 1 7 7 H 1.08994 * 109.47455 * 299.99741 * 6 3 2 8 8 C 1.52997 * 109.47037 * 60.00429 * 6 3 2 9 9 N 1.46911 * 109.47035 * 180.02562 * 6 3 2 10 10 C 1.46891 * 111.00073 * 175.00270 * 9 6 3 11 11 C 1.53002 * 109.47217 * 200.69193 * 10 9 6 12 12 C 1.50699 * 109.47284 * 174.33304 * 11 10 9 13 13 O 1.21282 * 119.99926 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99932 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99863 * 359.97438 * 14 12 11 16 16 C 1.46494 * 119.99817 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47298 * 89.99778 * 16 14 12 18 18 H 1.07996 * 120.00270 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99759 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00501 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46850 * 90.00524 * 21 19 17 23 23 H 1.48507 * 109.47034 * 210.00001 * 21 19 17 24 24 H 1.48495 * 109.47394 * 330.00005 * 21 19 17 25 25 C 1.46899 * 110.99542 * 298.95594 * 9 6 3 26 26 C 1.53001 * 117.52192 * 96.30226 * 25 9 6 27 27 C 1.53005 * 60.00135 * 107.47667 * 26 25 9 28 28 H 1.09006 * 109.46932 * 300.00121 * 1 2 3 29 29 H 1.09005 * 109.47046 * 59.99598 * 1 2 3 30 30 H 1.08990 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46777 * 240.00581 * 2 1 3 32 32 H 1.08992 * 109.46942 * 120.00050 * 2 1 3 33 33 H 1.08998 * 109.46915 * 300.00123 * 5 3 2 34 34 H 1.09003 * 109.46541 * 60.00042 * 5 3 2 35 35 H 1.08999 * 109.46615 * 179.97438 * 5 3 2 36 36 H 1.09008 * 109.47108 * 179.97438 * 8 6 3 37 37 H 1.08994 * 109.47418 * 299.99605 * 8 6 3 38 38 H 1.09000 * 109.47495 * 59.99810 * 8 6 3 39 39 H 1.09004 * 109.46921 * 320.68821 * 10 9 6 40 40 H 1.09001 * 109.47600 * 80.69091 * 10 9 6 41 41 H 1.09001 * 109.46801 * 294.33587 * 11 10 9 42 42 H 1.08996 * 109.47121 * 54.32691 * 11 10 9 43 43 H 1.08999 * 109.47452 * 90.00308 * 15 14 12 44 44 H 1.09001 * 109.46858 * 210.00764 * 15 14 12 45 45 H 1.09000 * 109.47042 * 330.00224 * 15 14 12 46 46 H 1.09000 * 109.46824 * 209.99561 * 16 14 12 47 47 H 1.09004 * 109.47450 * 329.99420 * 16 14 12 48 48 H 0.96994 * 120.00272 * 180.02562 * 20 19 17 49 49 H 1.09001 * 115.55119 * 310.59576 * 25 9 6 50 50 H 1.08996 * 117.50431 * 214.96937 * 26 25 9 51 51 H 1.09004 * 117.49103 * 359.97438 * 26 25 9 52 52 H 1.08992 * 117.49850 * 252.51221 * 27 26 25 53 53 H 1.09000 * 117.49369 * 107.49132 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9695 0.7604 -1.4331 9 7 4.0546 2.8294 -0.1251 10 6 5.5230 2.8685 -0.1252 11 6 5.9969 4.2308 0.3851 12 6 7.4981 4.2234 0.5171 13 8 8.1270 3.2264 0.2317 14 7 8.1417 5.3242 0.9534 15 6 7.3820 6.5283 1.2988 16 6 9.6011 5.3171 1.0812 17 6 10.2210 5.7754 -0.2137 18 1 9.5910 6.0445 -1.0485 19 6 11.5925 5.8509 -0.3326 20 7 12.3599 5.5227 0.6838 21 14 12.3610 6.4182 -1.9380 22 1 12.5309 7.8933 -1.9113 23 1 13.6863 5.7703 -2.1085 24 1 11.4768 6.0421 -3.0702 25 6 3.5079 3.5815 -1.2624 26 6 2.2645 4.4372 -1.0119 27 6 3.6242 5.1066 -1.2222 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5490 2.1252 1.3970 34 1 2.0700 1.5875 2.1492 35 1 1.9990 3.1541 1.3076 36 1 5.0559 0.7620 -1.5229 37 1 3.6062 -0.2673 -1.4332 38 1 3.5349 1.2994 -2.2749 39 1 5.9074 2.0830 0.5256 40 1 5.8907 2.7125 -1.1394 41 1 5.6980 5.0068 -0.3196 42 1 5.5476 4.4308 1.3578 43 1 7.1064 6.4942 2.3528 44 1 7.9943 7.4104 1.1117 45 1 6.4799 6.5762 0.6888 46 1 9.8987 5.9907 1.8848 47 1 9.9410 4.3069 1.3093 48 1 13.3247 5.5762 0.6003 49 1 3.5969 3.0954 -2.2339 50 1 1.5355 4.5141 -1.8186 51 1 1.8518 4.4419 -0.0031 52 1 4.1060 5.5518 -0.3517 53 1 3.7897 5.6238 -2.1673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092796220.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:41 Heat of formation + Delta-G solvation = -17.445535 kcal Electronic energy + Delta-G solvation = -27202.370507 eV Core-core repulsion = 23688.704659 eV Total energy + Delta-G solvation = -3513.665848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88936 -38.70806 -36.49497 -34.84290 -34.26511 -32.64444 -31.66887 -29.49687 -28.88136 -27.49494 -25.71958 -24.65029 -23.78617 -22.92481 -22.42309 -22.03243 -20.44729 -19.15984 -18.22991 -16.52381 -16.40589 -16.21954 -15.70237 -15.28845 -15.17261 -14.69268 -14.63053 -14.43211 -14.12031 -13.58841 -13.36715 -13.18293 -13.03862 -12.72310 -12.48247 -12.27645 -12.14045 -12.06414 -11.94416 -11.82119 -11.74165 -11.53498 -11.40706 -11.25849 -11.13772 -10.97536 -10.87077 -10.69581 -10.57202 -10.53467 -10.41802 -10.13863 -10.12583 -10.01372 -9.59712 -8.80518 -8.41671 -8.30077 -7.58494 -6.02155 -4.06754 3.30712 3.37170 3.41039 3.52646 3.58892 3.76071 4.15988 4.46802 4.53229 4.72882 4.80787 4.88160 4.92312 5.01293 5.10127 5.20343 5.22743 5.26813 5.32121 5.34284 5.39533 5.45336 5.47444 5.55117 5.60475 5.61162 5.67342 5.75059 5.76460 5.82677 5.84202 5.88220 5.93666 5.97052 5.97505 6.03738 6.08694 6.13358 6.20180 6.25650 6.26625 6.31746 6.41623 7.08477 7.09769 7.16997 7.48268 7.59315 7.94671 8.26554 8.48670 8.93375 9.16547 9.58290 11.05896 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002803 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.535505 B = 9988.290118 C =10142.401277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.080 4.080 4 H 0.072 0.928 5 C -0.141 4.141 6 C 0.091 3.909 7 H 0.082 0.918 8 C -0.190 4.190 9 N -0.505 5.505 10 C 0.077 3.923 11 C -0.139 4.139 12 C 0.504 3.496 13 O -0.547 6.547 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.245 3.755 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.005 3.995 26 C -0.167 4.167 27 C -0.177 4.177 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.263 0.737 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.106 0.894 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.997 -5.006 -0.843 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.099 4.099 4 H 0.091 0.909 5 C -0.198 4.198 6 C -0.018 4.018 7 H 0.100 0.900 8 C -0.249 4.249 9 N -0.228 5.228 10 C -0.051 4.051 11 C -0.179 4.179 12 C 0.290 3.710 13 O -0.426 6.426 14 N -0.336 5.336 15 C -0.059 4.059 16 C 0.125 3.875 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.103 4.103 26 C -0.204 4.204 27 C -0.214 4.214 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.120 0.880 52 H 0.124 0.876 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.598 -5.311 -0.483 25.170 hybrid contribution 0.884 0.070 -1.653 1.876 sum -23.715 -5.242 -2.136 24.381 Atomic orbital electron populations 1.21798 0.96020 1.01232 1.01815 1.21659 0.95762 0.96711 1.02004 1.21156 0.93934 0.95605 0.99221 0.90923 1.21826 0.99846 1.01726 0.96388 1.21724 0.95071 0.87818 0.97158 0.89971 1.22550 1.02087 1.01283 0.98981 1.61950 1.08275 1.12370 1.40191 1.21728 0.85276 0.97244 1.00819 1.21846 0.93458 0.99251 1.03355 1.20392 0.89257 0.83482 0.77842 1.90654 1.68887 1.33086 1.49944 1.48150 1.09814 1.11491 1.64174 1.21615 0.96161 0.89228 0.98916 1.19267 0.72588 0.98697 0.96917 1.21434 0.91531 1.44566 0.98764 0.92556 1.24943 0.97070 0.95427 0.96750 1.69933 1.04630 1.48346 1.30544 0.86506 0.78655 0.78542 0.83767 1.20647 1.21088 1.19938 1.22366 1.02255 0.92008 0.93713 1.23103 0.90823 1.03528 1.02985 1.23222 1.00468 0.94198 1.03561 0.92491 0.92978 0.93130 0.91877 0.92080 0.93491 0.93261 0.91262 0.92151 0.91894 0.92471 0.90215 0.93717 0.88905 0.89189 0.93808 0.90936 0.92495 0.95111 0.93904 0.92747 0.89584 0.89359 0.87977 0.87593 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.94 5.19 -26.73 -0.14 -1.08 16 3 C -0.08 -0.68 1.48 -90.62 -0.13 -0.81 16 4 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 5 C -0.14 -1.20 8.57 37.16 0.32 -0.88 16 6 C 0.09 0.92 1.89 -67.71 -0.13 0.79 16 7 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 8 C -0.19 -1.91 8.29 37.16 0.31 -1.60 16 9 N -0.50 -5.68 3.79 -218.72 -0.83 -6.51 16 10 C 0.08 1.10 3.49 -3.83 -0.01 1.09 16 11 C -0.14 -2.09 3.62 -27.88 -0.10 -2.19 16 12 C 0.50 10.61 7.67 -10.98 -0.08 10.52 16 13 O -0.55 -13.95 15.48 5.56 0.09 -13.86 16 14 N -0.60 -13.07 2.86 -182.96 -0.52 -13.59 16 15 C 0.09 1.37 10.24 59.85 0.61 1.98 16 16 C 0.24 6.54 5.16 -5.20 -0.03 6.51 16 17 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.01 0.06 3.63 -67.71 -0.25 -0.19 16 26 C -0.17 -1.45 8.87 -26.73 -0.24 -1.69 16 27 C -0.18 -1.75 8.87 -26.73 -0.24 -1.99 16 28 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.48 6.17 -51.93 -0.32 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.36 6.56 -51.93 -0.34 0.01 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.65 5.51 -51.93 -0.29 0.36 16 36 H 0.06 0.71 7.02 -51.92 -0.36 0.34 16 37 H 0.06 0.55 6.32 -51.93 -0.33 0.23 16 38 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 39 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 40 H 0.04 0.71 7.40 -51.93 -0.38 0.33 16 41 H 0.09 1.28 4.39 -51.93 -0.23 1.05 16 42 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 46 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 47 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.09 0.93 6.26 -51.93 -0.33 0.60 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 0.90 6.07 -51.93 -0.32 0.58 16 52 H 0.11 1.09 6.01 -51.93 -0.31 0.78 16 53 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -32.30 395.47 -9.25 -41.55 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -9.49 Total: -0.42 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.17 Total: -3.98 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.62 Total: -46.35 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.30 -9.25 -41.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092796220.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.102 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds