Wall clock time and date at job start Tue Mar 31 2020 10:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 H 1.08996 * 109.47613 * 305.00289 * 3 2 1 5 5 C 1.53009 * 109.46971 * 65.00066 * 3 2 1 6 6 C 1.52995 * 109.46796 * 184.99991 * 3 2 1 7 7 H 1.08994 * 109.47455 * 299.99741 * 6 3 2 8 8 C 1.52997 * 109.47037 * 60.00429 * 6 3 2 9 9 N 1.46911 * 109.47035 * 180.02562 * 6 3 2 10 10 C 1.46891 * 111.00073 * 175.00270 * 9 6 3 11 11 C 1.53002 * 109.47217 * 200.69193 * 10 9 6 12 12 C 1.50699 * 109.47284 * 174.33304 * 11 10 9 13 13 O 1.21282 * 119.99926 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99932 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99863 * 359.97438 * 14 12 11 16 16 C 1.46494 * 119.99817 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.47298 * 89.99778 * 16 14 12 18 18 H 1.07996 * 120.00270 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99759 * 179.97438 * 17 16 14 20 20 N 1.31518 * 120.00501 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99735 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46850 * 90.00524 * 21 19 17 23 23 H 1.48507 * 109.47034 * 210.00001 * 21 19 17 24 24 H 1.48495 * 109.47394 * 330.00005 * 21 19 17 25 25 C 1.46899 * 110.99542 * 298.95594 * 9 6 3 26 26 C 1.53001 * 117.52192 * 96.30226 * 25 9 6 27 27 C 1.53005 * 60.00135 * 107.47667 * 26 25 9 28 28 H 1.09006 * 109.46932 * 300.00121 * 1 2 3 29 29 H 1.09005 * 109.47046 * 59.99598 * 1 2 3 30 30 H 1.08990 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46777 * 240.00581 * 2 1 3 32 32 H 1.08992 * 109.46942 * 120.00050 * 2 1 3 33 33 H 1.08998 * 109.46915 * 300.00123 * 5 3 2 34 34 H 1.09003 * 109.46541 * 60.00042 * 5 3 2 35 35 H 1.08999 * 109.46615 * 179.97438 * 5 3 2 36 36 H 1.09008 * 109.47108 * 179.97438 * 8 6 3 37 37 H 1.08994 * 109.47418 * 299.99605 * 8 6 3 38 38 H 1.09000 * 109.47495 * 59.99810 * 8 6 3 39 39 H 1.09004 * 109.46921 * 320.68821 * 10 9 6 40 40 H 1.09001 * 109.47600 * 80.69091 * 10 9 6 41 41 H 1.09001 * 109.46801 * 294.33587 * 11 10 9 42 42 H 1.08996 * 109.47121 * 54.32691 * 11 10 9 43 43 H 1.08999 * 109.47452 * 90.00308 * 15 14 12 44 44 H 1.09001 * 109.46858 * 210.00764 * 15 14 12 45 45 H 1.09000 * 109.47042 * 330.00224 * 15 14 12 46 46 H 1.09000 * 109.46824 * 209.99561 * 16 14 12 47 47 H 1.09004 * 109.47450 * 329.99420 * 16 14 12 48 48 H 0.96994 * 120.00272 * 180.02562 * 20 19 17 49 49 H 1.09001 * 115.55119 * 310.59576 * 25 9 6 50 50 H 1.08996 * 117.50431 * 214.96937 * 26 25 9 51 51 H 1.09004 * 117.49103 * 359.97438 * 26 25 9 52 52 H 1.08992 * 117.49850 * 252.51221 * 27 26 25 53 53 H 1.09000 * 117.49369 * 107.49132 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9695 0.7604 -1.4331 9 7 4.0546 2.8294 -0.1251 10 6 5.5230 2.8685 -0.1252 11 6 5.9969 4.2308 0.3851 12 6 7.4981 4.2234 0.5171 13 8 8.1270 3.2264 0.2317 14 7 8.1417 5.3242 0.9534 15 6 7.3820 6.5283 1.2988 16 6 9.6011 5.3171 1.0812 17 6 10.2210 5.7754 -0.2137 18 1 9.5910 6.0445 -1.0485 19 6 11.5925 5.8509 -0.3326 20 7 12.3599 5.5227 0.6838 21 14 12.3610 6.4182 -1.9380 22 1 12.5309 7.8933 -1.9113 23 1 13.6863 5.7703 -2.1085 24 1 11.4768 6.0421 -3.0702 25 6 3.5079 3.5815 -1.2624 26 6 2.2645 4.4372 -1.0119 27 6 3.6242 5.1066 -1.2222 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5490 2.1252 1.3970 34 1 2.0700 1.5875 2.1492 35 1 1.9990 3.1541 1.3076 36 1 5.0559 0.7620 -1.5229 37 1 3.6062 -0.2673 -1.4332 38 1 3.5349 1.2994 -2.2749 39 1 5.9074 2.0830 0.5256 40 1 5.8907 2.7125 -1.1394 41 1 5.6980 5.0068 -0.3196 42 1 5.5476 4.4308 1.3578 43 1 7.1064 6.4942 2.3528 44 1 7.9943 7.4104 1.1117 45 1 6.4799 6.5762 0.6888 46 1 9.8987 5.9907 1.8848 47 1 9.9410 4.3069 1.3093 48 1 13.3247 5.5762 0.6003 49 1 3.5969 3.0954 -2.2339 50 1 1.5355 4.5141 -1.8186 51 1 1.8518 4.4419 -0.0031 52 1 4.1060 5.5518 -0.3517 53 1 3.7897 5.6238 -2.1673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092796220.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:40 Heat of formation + Delta-G solvation = -36.360879 kcal Electronic energy + Delta-G solvation = -27203.190738 eV Core-core repulsion = 23688.704659 eV Total energy + Delta-G solvation = -3514.486079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99583 -40.15572 -37.23405 -36.61427 -35.21062 -34.73727 -32.81079 -30.37358 -30.03916 -29.09957 -27.28564 -25.61084 -25.19434 -23.69650 -23.56922 -23.16592 -21.27765 -20.12135 -19.69663 -18.70585 -17.77006 -17.34683 -16.94567 -16.83253 -16.26470 -16.08683 -15.65271 -15.49035 -15.31477 -14.64332 -14.42660 -14.24211 -14.03026 -13.93691 -13.76458 -13.62496 -13.43844 -13.33060 -13.23823 -13.01749 -12.81306 -12.73358 -12.59411 -12.46850 -12.40237 -12.21756 -12.10914 -12.04790 -11.90967 -11.71286 -11.42421 -11.26749 -11.17161 -11.00312 -10.81890 -10.65294 -10.52041 -9.41012 -9.25000 -8.23340 -6.38483 1.34817 1.38096 1.48356 1.86244 2.28111 2.41265 2.87402 3.00021 3.05780 3.74752 3.87528 4.01843 4.03636 4.10080 4.13274 4.16357 4.21209 4.34451 4.41096 4.44736 4.49199 4.57922 4.66496 4.73557 4.74736 4.76116 4.82116 4.87399 4.92782 4.95983 4.96941 4.99526 5.02013 5.05624 5.07350 5.14420 5.22996 5.23260 5.23764 5.28361 5.37207 5.39200 5.46098 5.55746 5.63618 5.74231 5.84576 6.05443 6.08849 6.27388 6.69020 6.80447 7.27459 7.50041 8.83733 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002803 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.535505 B = 9988.290118 C =10142.401277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.071 4.071 4 H 0.075 0.925 5 C -0.138 4.138 6 C 0.088 3.912 7 H 0.071 0.929 8 C -0.185 4.185 9 N -0.495 5.495 10 C 0.087 3.913 11 C -0.117 4.117 12 C 0.493 3.507 13 O -0.603 6.603 14 N -0.612 5.612 15 C 0.079 3.921 16 C 0.258 3.742 17 C -0.541 4.541 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.273 1.273 25 C -0.012 4.012 26 C -0.144 4.144 27 C -0.184 4.184 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.023 0.977 47 H -0.005 1.005 48 H 0.267 0.733 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.105 0.895 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.679 -3.639 -1.732 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.195 4.195 6 C -0.020 4.020 7 H 0.089 0.911 8 C -0.244 4.244 9 N -0.218 5.218 10 C -0.042 4.042 11 C -0.157 4.157 12 C 0.283 3.717 13 O -0.485 6.485 14 N -0.343 5.343 15 C -0.063 4.063 16 C 0.137 3.863 17 C -0.580 4.580 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.121 4.121 26 C -0.181 4.181 27 C -0.221 4.221 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.041 0.959 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.122 0.878 51 H 0.124 0.876 52 H 0.123 0.877 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -27.331 -3.908 -1.356 27.642 hybrid contribution 1.692 -0.390 -1.334 2.190 sum -25.639 -4.299 -2.690 26.135 Atomic orbital electron populations 1.21776 0.95042 1.01715 1.02077 1.21647 0.96565 0.95968 1.01869 1.21074 0.92144 0.96319 0.99394 0.90641 1.21795 1.00600 1.01118 0.95947 1.21789 0.96426 0.87098 0.96668 0.91127 1.22496 1.00486 1.02216 0.99164 1.61966 1.05818 1.13221 1.40800 1.21501 0.87496 0.96236 0.98946 1.21767 0.88444 1.00232 1.05236 1.21466 0.91649 0.82301 0.76325 1.90622 1.70590 1.35113 1.52196 1.48199 1.08177 1.13741 1.64168 1.21926 0.96594 0.86430 1.01331 1.18744 0.76121 0.95444 0.96040 1.21689 0.92140 1.44873 0.99290 0.92947 1.25891 0.97606 0.95303 1.00523 1.70055 1.05082 1.49040 1.32722 0.85400 0.77482 0.78966 0.78865 1.18621 1.20608 1.19826 1.22426 1.04202 0.92341 0.93139 1.23137 0.90285 1.00960 1.03759 1.23296 1.01509 0.93451 1.03837 0.92246 0.92647 0.92618 0.91897 0.92405 0.92226 0.93954 0.91849 0.94542 0.90659 0.92010 0.92298 0.95959 0.86779 0.86668 0.91161 0.91595 0.88806 0.95893 0.98643 0.92386 0.90052 0.87762 0.87600 0.87705 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.12 -1.66 5.19 30.60 0.16 -1.50 16 3 C -0.07 -1.07 1.48 -10.79 -0.02 -1.08 16 4 H 0.08 1.13 6.43 -2.39 -0.02 1.12 16 5 C -0.14 -2.04 8.57 71.99 0.62 -1.43 16 6 C 0.09 1.74 1.89 44.91 0.08 1.82 16 7 H 0.07 1.56 7.95 -2.39 -0.02 1.54 16 8 C -0.19 -3.70 8.29 71.98 0.60 -3.10 16 9 N -0.50 -10.67 3.79 -845.90 -3.21 -13.88 16 10 C 0.09 2.52 3.49 86.31 0.30 2.82 16 11 C -0.12 -3.39 3.62 29.85 0.11 -3.29 16 12 C 0.49 21.16 7.67 87.66 0.67 21.83 16 13 O -0.60 -32.38 15.48 -3.04 -0.05 -32.42 16 14 N -0.61 -26.70 2.86 -851.13 -2.43 -29.13 16 15 C 0.08 2.40 10.24 127.77 1.31 3.70 16 16 C 0.26 14.36 5.16 85.63 0.44 14.80 16 17 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 18 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 19 C 0.01 0.33 5.46 84.65 0.46 0.79 16 20 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 21 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.01 -0.23 3.63 44.92 0.16 -0.07 16 26 C -0.14 -2.05 8.87 30.60 0.27 -1.78 16 27 C -0.18 -3.12 8.87 30.60 0.27 -2.84 16 28 H 0.06 0.64 6.57 -2.38 -0.02 0.63 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.86 6.17 -2.39 -0.01 0.84 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.74 6.56 -2.39 -0.02 0.73 16 34 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 1.03 5.51 -2.39 -0.01 1.01 16 36 H 0.04 0.89 7.02 -2.38 -0.02 0.88 16 37 H 0.07 1.29 6.32 -2.39 -0.02 1.28 16 38 H 0.06 1.17 6.26 -2.39 -0.01 1.15 16 39 H 0.06 1.95 7.58 -2.38 -0.02 1.93 16 40 H 0.02 0.74 7.40 -2.39 -0.02 0.72 16 41 H 0.11 2.87 4.39 -2.39 -0.01 2.86 16 42 H 0.12 2.82 8.11 -2.39 -0.02 2.80 16 43 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 45 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 46 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 47 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 48 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 49 H 0.08 1.64 6.26 -2.39 -0.01 1.62 16 50 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.11 1.48 6.07 -2.38 -0.01 1.46 16 52 H 0.10 1.80 6.01 -2.39 -0.01 1.79 16 53 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.40 395.47 3.87 -69.53 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.87 Total: 17.24 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 6.38 Total: -1.99 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.35 Total: -99.99 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.40 3.87 -69.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092796220.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.169 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds