Wall clock time and date at job start Tue Mar 31 2020 09:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 7 7 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 8 8 C 1.34774 * 120.00144 * 155.00412 * 7 4 3 9 9 O 1.21282 * 119.99907 * 359.97438 * 8 7 4 10 10 C 1.50696 * 120.00466 * 179.97438 * 8 7 4 11 11 H 1.09006 * 109.50232 * 59.99583 * 10 8 7 12 12 C 1.53117 * 109.50253 * 299.92067 * 10 8 7 13 13 C 1.53127 * 109.15977 * 182.40082 * 12 10 8 14 14 C 1.53036 * 109.27508 * 57.65661 * 13 12 10 15 15 N 1.46842 * 109.52296 * 300.81733 * 14 13 12 16 16 C 1.46904 * 111.00024 * 185.84701 * 15 14 13 17 17 C 1.53005 * 109.46603 * 293.95195 * 16 15 14 18 18 C 1.52997 * 109.47012 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47103 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00322 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00127 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99683 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47028 * 120.00386 * 23 21 19 26 26 H 1.48501 * 109.47270 * 239.99900 * 23 21 19 27 27 C 1.46845 * 111.23345 * 61.72680 * 15 14 13 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.09002 * 109.46818 * 299.99696 * 6 4 3 36 36 H 1.09004 * 109.47242 * 59.99175 * 6 4 3 37 37 H 1.09000 * 109.47237 * 179.97438 * 6 4 3 38 38 H 0.97001 * 120.00062 * 335.00212 * 7 4 3 39 39 H 1.08997 * 109.52439 * 302.30198 * 12 10 8 40 40 H 1.09003 * 109.52084 * 62.43643 * 12 10 8 41 41 H 1.09003 * 109.50039 * 177.59908 * 13 12 10 42 42 H 1.09001 * 109.50198 * 297.67371 * 13 12 10 43 43 H 1.08993 * 109.46422 * 60.83686 * 14 13 12 44 44 H 1.09007 * 109.45686 * 180.81710 * 14 13 12 45 45 H 1.08996 * 109.47144 * 53.94646 * 16 15 14 46 46 H 1.09003 * 109.47180 * 173.95543 * 16 15 14 47 47 H 1.09000 * 109.46908 * 300.00336 * 17 16 15 48 48 H 1.09003 * 109.47068 * 60.00279 * 17 16 15 49 49 H 1.09000 * 109.47236 * 300.00382 * 18 17 16 50 50 H 1.09004 * 109.47399 * 59.99754 * 18 17 16 51 51 H 0.97001 * 119.99934 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.49740 * 178.28161 * 27 15 14 53 53 H 1.08993 * 109.43116 * 58.31159 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0800 2.8795 -0.1263 7 7 4.0587 0.8586 1.2509 8 6 5.2807 0.2921 1.2983 9 8 5.9755 0.2652 0.3046 10 6 5.7838 -0.3080 2.5858 11 1 5.1117 -1.1056 2.9026 12 6 5.8381 0.7744 3.6674 13 6 6.4064 0.1706 4.9547 14 6 7.7924 -0.4127 4.6701 15 7 7.6868 -1.4435 3.6297 16 6 8.9740 -2.1223 3.4285 17 6 9.9894 -1.1308 2.8568 18 6 11.3298 -1.8378 2.6466 19 6 12.3301 -0.8611 2.0841 20 1 12.0388 0.1616 1.8949 21 6 13.6173 -1.2730 1.8109 22 7 13.9719 -2.5184 2.0407 23 14 14.8570 -0.0625 1.1129 24 1 14.2129 1.2652 0.9468 25 1 16.0080 0.0590 2.0433 26 1 15.3359 -0.5493 -0.2058 27 6 7.1874 -0.8784 2.3697 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.7163 3.3139 -1.0576 36 1 3.7169 3.4689 0.7157 37 1 5.1700 2.8795 -0.1264 38 1 3.5029 0.8798 2.0456 39 1 6.4790 1.5906 3.3341 40 1 4.8332 1.1532 3.8544 41 1 6.4874 0.9467 5.7158 42 1 5.7443 -0.6193 5.3094 43 1 8.4573 0.3808 4.3290 44 1 8.1937 -0.8563 5.5813 45 1 9.3366 -2.5039 4.3829 46 1 8.8431 -2.9505 2.7320 47 1 9.6267 -0.7491 1.9024 48 1 10.1203 -0.3026 3.5532 49 1 11.6926 -2.2199 3.6008 50 1 11.1987 -2.6659 1.9500 51 1 14.8773 -2.8083 1.8482 52 1 7.1490 -1.6595 1.6105 53 1 7.8555 -0.0832 2.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102400055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:18 Heat of formation + Delta-G solvation = -79.121786 kcal Electronic energy + Delta-G solvation = -26517.767522 eV Core-core repulsion = 23001.427191 eV Total energy + Delta-G solvation = -3516.340331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42631 -38.62880 -36.87712 -34.79731 -33.76482 -32.94288 -31.52055 -30.59312 -30.31254 -27.07461 -26.55229 -24.39353 -24.14935 -22.21219 -22.06504 -21.24594 -20.85330 -20.32989 -18.96353 -17.26382 -16.66672 -16.22014 -15.50844 -15.09903 -15.09118 -14.79926 -14.56086 -14.45853 -14.21640 -13.89963 -13.76792 -13.59502 -13.29444 -13.00170 -12.74463 -12.61009 -12.48921 -12.39376 -12.15543 -11.88371 -11.81658 -11.41625 -11.32696 -11.11527 -11.09627 -10.98281 -10.96994 -10.79008 -10.70140 -10.64388 -10.54037 -10.30531 -9.67351 -9.55039 -9.38068 -9.22963 -9.10633 -8.30263 -7.82090 -5.95195 -3.97134 2.61135 2.99683 3.33932 3.41100 3.46069 4.20482 4.29342 4.50205 4.55032 4.58265 4.59969 4.72122 4.83556 4.97394 5.03952 5.12496 5.18031 5.18505 5.23739 5.38286 5.40214 5.41940 5.43166 5.50704 5.53917 5.65806 5.66325 5.70842 5.72664 5.80000 5.84937 5.87342 5.90971 5.98076 6.00453 6.05853 6.12071 6.22900 6.29437 6.36210 6.39891 6.68047 6.85189 7.12570 7.35132 7.40091 7.48095 7.72404 7.87509 8.04907 8.17718 8.48833 9.09917 9.66611 11.15940 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.002606 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.193262 B =10742.876796 C =11535.478728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.139 3.861 5 H 0.088 0.912 6 C -0.164 4.164 7 N -0.728 5.728 8 C 0.519 3.481 9 O -0.532 6.532 10 C -0.103 4.103 11 H 0.102 0.898 12 C -0.109 4.109 13 C -0.113 4.113 14 C 0.048 3.952 15 N -0.540 5.540 16 C 0.055 3.945 17 C -0.146 4.146 18 C 0.025 3.975 19 C -0.517 4.517 20 H 0.053 0.947 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.073 3.927 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.016 0.984 51 H 0.259 0.741 52 H 0.079 0.921 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.737 7.738 1.932 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.164 4.164 4 C 0.035 3.965 5 H 0.106 0.894 6 C -0.222 4.222 7 N -0.381 5.381 8 C 0.305 3.695 9 O -0.407 6.407 10 C -0.124 4.124 11 H 0.120 0.880 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.080 4.080 15 N -0.263 5.263 16 C -0.072 4.072 17 C -0.185 4.185 18 C -0.013 4.013 19 C -0.556 4.556 20 H 0.071 0.929 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.232 0.768 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.034 0.966 51 H 0.069 0.931 52 H 0.097 0.903 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.425 7.245 1.346 29.364 hybrid contribution 1.124 1.260 -0.328 1.720 sum -27.300 8.505 1.018 28.613 Atomic orbital electron populations 1.21775 0.95789 1.01727 1.01695 1.21543 0.95748 0.96490 1.02589 1.21927 0.93906 0.97564 1.03001 1.20973 0.93273 0.94486 0.87778 0.89416 1.22181 1.02401 0.95871 1.01793 1.46111 1.18056 1.60527 1.13377 1.20732 0.80957 0.77325 0.90467 1.90739 1.55896 1.57278 1.36801 1.21352 0.99628 0.98952 0.92516 0.87995 1.21552 1.01176 0.97115 0.94873 1.21573 0.97138 0.99991 0.96392 1.22106 0.96060 0.94113 0.95733 1.62213 1.28507 1.28481 1.07126 1.22308 0.86570 0.97054 1.01284 1.22234 0.98090 0.98537 0.99601 1.19020 0.89806 0.95608 0.96864 1.21302 0.95599 0.96662 1.42005 0.92878 1.25030 0.98486 0.95179 0.95857 1.69979 1.18816 1.15779 1.48961 0.86561 0.81356 0.81489 0.78765 1.19811 1.21038 1.20986 1.21786 0.92544 0.99308 0.91867 0.92803 0.92785 0.92712 0.91829 0.91775 0.90469 0.91443 0.91776 0.92587 0.91867 0.76831 0.91638 0.91776 0.91423 0.91099 0.94184 0.90735 0.91056 0.91007 0.93050 0.93498 0.96665 0.96580 0.93123 0.90267 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.13 -0.76 5.82 -26.73 -0.16 -0.92 16 3 C -0.13 -0.71 4.75 -26.73 -0.13 -0.84 16 4 C 0.14 1.15 2.58 -67.93 -0.17 0.98 16 5 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 6 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 7 N -0.73 -6.21 4.43 -53.81 -0.24 -6.45 16 8 C 0.52 6.39 7.12 -10.99 -0.08 6.31 16 9 O -0.53 -9.00 15.65 5.56 0.09 -8.91 16 10 C -0.10 -1.17 2.69 -91.69 -0.25 -1.42 16 11 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 12 C -0.11 -1.05 5.16 -26.61 -0.14 -1.19 16 13 C -0.11 -1.13 6.09 -26.65 -0.16 -1.29 16 14 C 0.05 0.65 5.05 -3.84 -0.02 0.63 16 15 N -0.54 -8.20 4.86 -234.67 -1.14 -9.34 16 16 C 0.05 0.98 5.36 -3.82 -0.02 0.96 16 17 C -0.15 -3.15 4.46 -26.73 -0.12 -3.27 16 18 C 0.02 0.66 4.97 -27.89 -0.14 0.52 16 19 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 20 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 23 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.07 1.12 3.41 -3.83 -0.01 1.11 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 7.75 -51.93 -0.40 0.00 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.40 2.36 8.08 -40.82 -0.33 2.03 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.61 6.75 -51.93 -0.35 0.25 16 44 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 45 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.05 1.15 6.50 -51.93 -0.34 0.81 16 48 H 0.05 1.00 6.68 -51.93 -0.35 0.66 16 49 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 52 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 53 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 LS Contribution 408.59 15.07 6.16 6.16 Total: -1.00 -33.25 408.59 -10.96 -44.21 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -10.46 Total: -2.25 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.08 Total: -13.90 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.64 Total: -42.73 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.25 -10.96 -44.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.907 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds