Wall clock time and date at job start Tue Mar 31 2020 09:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47704 * 54.99481 * 4 3 2 6 6 C 1.53000 * 109.47194 * 175.00077 * 4 3 2 7 7 N 1.46502 * 109.46798 * 294.99603 * 4 3 2 8 8 C 1.34774 * 120.00144 * 155.00412 * 7 4 3 9 9 O 1.21282 * 119.99907 * 359.97438 * 8 7 4 10 10 C 1.50696 * 120.00466 * 179.97438 * 8 7 4 11 11 H 1.09006 * 109.50232 * 59.99583 * 10 8 7 12 12 C 1.53117 * 109.50253 * 299.92067 * 10 8 7 13 13 C 1.53127 * 109.15977 * 182.40082 * 12 10 8 14 14 C 1.53036 * 109.27508 * 57.65661 * 13 12 10 15 15 N 1.46842 * 109.52296 * 300.81733 * 14 13 12 16 16 C 1.46904 * 111.00024 * 185.84701 * 15 14 13 17 17 C 1.53005 * 109.46603 * 293.95195 * 16 15 14 18 18 C 1.52997 * 109.47012 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47103 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00322 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00127 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99683 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47111 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47028 * 120.00386 * 23 21 19 26 26 H 1.48501 * 109.47270 * 239.99900 * 23 21 19 27 27 C 1.46845 * 111.23345 * 61.72680 * 15 14 13 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.09002 * 109.46818 * 299.99696 * 6 4 3 36 36 H 1.09004 * 109.47242 * 59.99175 * 6 4 3 37 37 H 1.09000 * 109.47237 * 179.97438 * 6 4 3 38 38 H 0.97001 * 120.00062 * 335.00212 * 7 4 3 39 39 H 1.08997 * 109.52439 * 302.30198 * 12 10 8 40 40 H 1.09003 * 109.52084 * 62.43643 * 12 10 8 41 41 H 1.09003 * 109.50039 * 177.59908 * 13 12 10 42 42 H 1.09001 * 109.50198 * 297.67371 * 13 12 10 43 43 H 1.08993 * 109.46422 * 60.83686 * 14 13 12 44 44 H 1.09007 * 109.45686 * 180.81710 * 14 13 12 45 45 H 1.08996 * 109.47144 * 53.94646 * 16 15 14 46 46 H 1.09003 * 109.47180 * 173.95543 * 16 15 14 47 47 H 1.09000 * 109.46908 * 300.00336 * 17 16 15 48 48 H 1.09003 * 109.47068 * 60.00279 * 17 16 15 49 49 H 1.09000 * 109.47236 * 300.00382 * 18 17 16 50 50 H 1.09004 * 109.47399 * 59.99754 * 18 17 16 51 51 H 0.97001 * 119.99934 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.49740 * 178.28161 * 27 15 14 53 53 H 1.08993 * 109.43116 * 58.31159 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0800 2.8795 -0.1263 7 7 4.0587 0.8586 1.2509 8 6 5.2807 0.2921 1.2983 9 8 5.9755 0.2652 0.3046 10 6 5.7838 -0.3080 2.5858 11 1 5.1117 -1.1056 2.9026 12 6 5.8381 0.7744 3.6674 13 6 6.4064 0.1706 4.9547 14 6 7.7924 -0.4127 4.6701 15 7 7.6868 -1.4435 3.6297 16 6 8.9740 -2.1223 3.4285 17 6 9.9894 -1.1308 2.8568 18 6 11.3298 -1.8378 2.6466 19 6 12.3301 -0.8611 2.0841 20 1 12.0388 0.1616 1.8949 21 6 13.6173 -1.2730 1.8109 22 7 13.9719 -2.5184 2.0407 23 14 14.8570 -0.0625 1.1129 24 1 14.2129 1.2652 0.9468 25 1 16.0080 0.0590 2.0433 26 1 15.3359 -0.5493 -0.2058 27 6 7.1874 -0.8784 2.3697 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.7163 3.3139 -1.0576 36 1 3.7169 3.4689 0.7157 37 1 5.1700 2.8795 -0.1264 38 1 3.5029 0.8798 2.0456 39 1 6.4790 1.5906 3.3341 40 1 4.8332 1.1532 3.8544 41 1 6.4874 0.9467 5.7158 42 1 5.7443 -0.6193 5.3094 43 1 8.4573 0.3808 4.3290 44 1 8.1937 -0.8563 5.5813 45 1 9.3366 -2.5039 4.3829 46 1 8.8431 -2.9505 2.7320 47 1 9.6267 -0.7491 1.9024 48 1 10.1203 -0.3026 3.5532 49 1 11.6926 -2.2199 3.6008 50 1 11.1987 -2.6659 1.9500 51 1 14.8773 -2.8083 1.8482 52 1 7.1490 -1.6595 1.6105 53 1 7.8555 -0.0832 2.0390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102400055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:17 Heat of formation + Delta-G solvation = -100.347824 kcal Electronic energy + Delta-G solvation = -26518.687952 eV Core-core repulsion = 23001.427191 eV Total energy + Delta-G solvation = -3517.260761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.42567 -39.74440 -37.68065 -36.34163 -34.93336 -34.32999 -32.67806 -32.10801 -31.25112 -28.36375 -27.58705 -25.86719 -25.30348 -23.61088 -22.81879 -22.41729 -21.81146 -21.39802 -20.18223 -18.63069 -18.10239 -17.47278 -16.63709 -16.45585 -16.23707 -16.09386 -15.61614 -15.50332 -15.31931 -15.06108 -14.78184 -14.69212 -14.34760 -14.13286 -13.82274 -13.72826 -13.57752 -13.49481 -13.19706 -13.02148 -12.90833 -12.68777 -12.52604 -12.50100 -12.45930 -12.39165 -11.93485 -11.86198 -11.71449 -11.63938 -11.51886 -11.48263 -11.40578 -11.35950 -11.20562 -10.68344 -10.60443 -10.06917 -9.23739 -8.24557 -6.36633 1.33831 1.34949 1.48257 1.64014 2.15191 2.36054 3.03346 3.06848 3.60285 3.70502 3.80868 3.91417 4.04941 4.08125 4.10994 4.20911 4.27326 4.34459 4.36319 4.39111 4.49343 4.57248 4.60200 4.62720 4.75843 4.76175 4.81010 4.82555 4.83326 4.91795 4.98271 5.01577 5.03373 5.07556 5.08361 5.11300 5.17190 5.21406 5.27585 5.30515 5.33105 5.43111 5.44896 5.49297 5.60646 5.65530 5.78851 6.03441 6.15997 6.21496 6.58811 6.78883 7.30260 7.32233 8.86603 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.002606 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.193262 B =10742.876796 C =11535.478728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.115 4.115 4 C 0.138 3.862 5 H 0.058 0.942 6 C -0.160 4.160 7 N -0.706 5.706 8 C 0.518 3.482 9 O -0.588 6.588 10 C -0.093 4.093 11 H 0.126 0.874 12 C -0.105 4.105 13 C -0.104 4.104 14 C 0.040 3.960 15 N -0.527 5.527 16 C 0.064 3.936 17 C -0.127 4.127 18 C 0.030 3.970 19 C -0.546 4.546 20 H 0.050 0.950 21 C 0.000 4.000 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.267 1.267 25 H -0.272 1.272 26 H -0.276 1.276 27 C 0.076 3.924 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.036 0.964 48 H 0.047 0.953 49 H -0.002 1.002 50 H -0.010 1.010 51 H 0.265 0.735 52 H 0.057 0.943 53 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.249 9.427 3.379 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.152 4.152 4 C 0.033 3.967 5 H 0.076 0.924 6 C -0.218 4.218 7 N -0.359 5.359 8 C 0.305 3.695 9 O -0.468 6.468 10 C -0.115 4.115 11 H 0.144 0.856 12 C -0.142 4.142 13 C -0.142 4.142 14 C -0.088 4.088 15 N -0.250 5.250 16 C -0.064 4.064 17 C -0.166 4.166 18 C -0.008 4.008 19 C -0.584 4.584 20 H 0.068 0.932 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.197 1.197 26 H -0.201 1.201 27 C -0.053 4.053 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.016 0.984 50 H 0.009 0.991 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -30.998 8.950 2.828 32.388 hybrid contribution 1.897 0.711 -0.796 2.177 sum -29.101 9.661 2.032 30.730 Atomic orbital electron populations 1.21750 0.94784 1.01833 1.02356 1.21540 0.96585 0.96570 1.01775 1.21863 0.91247 0.97620 1.04512 1.21028 0.95222 0.93895 0.86550 0.92361 1.22142 1.00147 0.96151 1.03387 1.45938 1.16803 1.58812 1.14343 1.20914 0.81557 0.77123 0.89954 1.90725 1.57704 1.59704 1.38684 1.21286 0.97146 1.00186 0.92853 0.85586 1.21586 1.03183 0.95727 0.93750 1.21563 0.94665 1.00971 0.96966 1.22303 0.98554 0.92996 0.94937 1.62286 1.26100 1.29175 1.07395 1.22134 0.87072 0.96107 1.01110 1.21995 0.96495 0.98933 0.99146 1.18910 0.92104 0.94825 0.94978 1.21677 0.96840 0.97011 1.42872 0.93187 1.25984 1.00639 0.97243 0.95924 1.70094 1.19682 1.17673 1.49509 0.85407 0.78535 0.78913 0.78256 1.19170 1.19683 1.20109 1.21698 0.94670 0.97585 0.91349 0.91728 0.92516 0.92956 0.93471 0.91903 0.89511 0.89306 0.90470 0.90700 0.95269 0.74692 0.93440 0.87642 0.89125 0.89346 0.96412 0.90116 0.90260 0.91644 0.94559 0.93433 0.98385 0.99143 0.92603 0.92412 0.96644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.31 5.82 30.59 0.18 -1.14 16 3 C -0.11 -1.01 4.75 30.59 0.15 -0.86 16 4 C 0.14 2.14 2.58 44.99 0.12 2.26 16 5 H 0.06 1.28 7.58 -2.39 -0.02 1.27 16 6 C -0.16 -2.51 9.48 71.98 0.68 -1.82 16 7 N -0.71 -10.93 4.43 -442.54 -1.96 -12.89 16 8 C 0.52 12.71 7.12 87.66 0.62 13.34 16 9 O -0.59 -21.15 15.65 -3.03 -0.05 -21.20 16 10 C -0.09 -2.03 2.69 -11.49 -0.03 -2.06 16 11 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 12 C -0.10 -1.74 5.16 30.68 0.16 -1.58 16 13 C -0.10 -1.74 6.09 30.65 0.19 -1.56 16 14 C 0.04 1.03 5.05 86.33 0.44 1.47 16 15 N -0.53 -16.03 4.86 -896.37 -4.35 -20.39 16 16 C 0.06 2.37 5.36 86.30 0.46 2.83 16 17 C -0.13 -5.77 4.46 30.60 0.14 -5.63 16 18 C 0.03 1.67 4.97 29.85 0.15 1.81 16 19 C -0.55 -33.34 9.11 25.60 0.23 -33.11 16 20 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.93 -58.61 13.29 21.45 0.28 -58.32 16 23 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C 0.08 2.40 3.41 86.33 0.29 2.70 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.66 7.75 -2.39 -0.02 0.64 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.42 3.45 8.08 -92.71 -0.75 2.70 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.94 7.65 -2.39 -0.02 0.92 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.02 0.54 6.75 -2.39 -0.02 0.52 16 44 H 0.08 2.00 8.06 -2.38 -0.02 1.98 16 45 H 0.08 2.81 8.06 -2.39 -0.02 2.80 16 46 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.04 1.74 6.50 -2.39 -0.02 1.72 16 48 H 0.05 2.13 6.68 -2.39 -0.02 2.11 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 51 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 52 H 0.06 2.04 8.10 -2.39 -0.02 2.03 16 53 H 0.02 0.59 6.54 -2.39 -0.02 0.57 16 Total: -1.00 -76.72 408.59 0.99 -75.73 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.09 Total: 11.81 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.95 Total: -23.37 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -6.03 Total: -91.60 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.72 0.99 -75.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102400055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.613 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds