Wall clock time and date at job start Tue Mar 31 2020 09:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47283 * 2 1 4 4 H 1.08996 * 109.47518 * 55.00102 * 3 2 1 5 5 C 1.53004 * 109.47273 * 295.00419 * 3 2 1 6 6 C 1.53003 * 109.47150 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47330 * 59.99680 * 6 5 3 8 8 C 1.52994 * 109.47273 * 300.00255 * 7 6 5 9 9 H 1.09005 * 109.46952 * 300.00178 * 8 7 6 10 10 N 1.46492 * 109.47379 * 180.02562 * 8 7 6 11 11 C 1.34781 * 120.00297 * 84.99463 * 10 8 7 12 12 O 1.21583 * 119.99716 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00055 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99669 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46858 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47258 * 60.00017 * 15 14 13 17 17 C 1.53001 * 109.47247 * 299.99871 * 15 14 13 18 18 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.52996 * 109.47379 * 175.00428 * 3 2 1 28 28 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46838 * 299.99870 * 1 2 3 30 30 H 1.08993 * 109.46986 * 59.99686 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00130 * 2 1 3 32 32 H 1.08994 * 109.47389 * 120.00666 * 2 1 3 33 33 H 1.08997 * 109.47138 * 299.99719 * 5 3 2 34 34 H 1.08996 * 109.47257 * 59.99671 * 5 3 2 35 35 H 1.09002 * 109.47042 * 179.97438 * 6 5 3 36 36 H 1.09005 * 109.46749 * 299.99591 * 6 5 3 37 37 H 1.08999 * 109.46716 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46638 * 59.99991 * 7 6 5 39 39 H 0.97003 * 119.99978 * 264.99946 * 10 8 7 40 40 H 0.96994 * 120.00039 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.46998 * 59.99975 * 14 13 11 42 42 H 1.09004 * 109.47081 * 299.99839 * 14 13 11 43 43 H 1.09000 * 109.47249 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.46941 * 299.99988 * 16 15 14 45 45 H 1.08996 * 109.47114 * 60.00036 * 16 15 14 46 46 H 1.08996 * 109.47108 * 300.00452 * 17 15 14 47 47 H 1.08996 * 109.47041 * 59.99958 * 17 15 14 48 48 H 1.09000 * 109.47105 * 180.02562 * 17 15 14 49 49 H 1.09003 * 109.46825 * 60.00325 * 18 15 14 50 50 H 1.08996 * 109.47396 * 299.99898 * 18 15 14 51 51 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 52 52 H 1.08997 * 109.47223 * 60.00164 * 27 3 2 53 53 H 1.09002 * 109.46905 * 300.00077 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1458 3.5689 -1.3076 7 6 3.6707 3.5701 -1.1822 8 6 4.0755 2.8860 0.1251 9 1 3.6412 3.4253 0.9670 10 7 5.5354 2.8878 0.2455 11 6 6.1679 3.9603 0.7615 12 8 5.5266 4.9262 1.1275 13 7 7.5111 3.9621 0.8717 14 6 8.1984 5.1277 1.4332 15 6 9.7070 4.8733 1.4451 16 6 10.1951 4.6333 0.0151 17 6 10.0098 3.6416 2.3009 18 6 10.4249 6.0909 2.0309 19 6 11.9109 5.8406 2.0421 20 1 12.3041 4.9063 1.6692 21 6 12.7686 6.8039 2.5294 22 7 12.2900 7.9413 2.9840 23 14 14.6107 6.4939 2.5427 24 1 14.9960 5.8554 3.8269 25 1 15.3309 7.7842 2.3957 26 1 14.9696 5.5955 1.4160 27 6 3.5648 1.4443 0.1256 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1492 34 1 0.5489 2.1253 -1.3969 35 1 1.8578 4.0561 -2.2391 36 1 1.7115 4.1081 -0.4657 37 1 4.0344 4.5977 -1.1828 38 1 4.1048 3.0308 -2.0241 39 1 6.0471 2.1170 -0.0463 40 1 8.0227 3.1916 0.5794 41 1 7.8503 5.2990 2.4518 42 1 7.9831 6.0051 0.8232 43 1 11.2700 4.4525 0.0236 44 1 9.6837 3.7661 -0.4026 45 1 9.9795 5.5107 -0.5945 46 1 9.6620 3.8126 3.3196 47 1 9.4984 2.7744 1.8832 48 1 11.0846 3.4607 2.3097 49 1 10.0772 6.2623 3.0497 50 1 10.2092 6.9681 1.4210 51 1 11.3335 8.1024 2.9768 52 1 3.9994 0.9053 -0.7162 53 1 3.8532 0.9569 1.0570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353729899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:10 Heat of formation + Delta-G solvation = -87.703055 kcal Electronic energy + Delta-G solvation = -26375.598354 eV Core-core repulsion = 22858.885911 eV Total energy + Delta-G solvation = -3516.712443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27462 -38.94502 -37.25294 -34.98948 -33.74811 -33.16838 -32.07822 -30.21190 -28.80676 -26.65571 -26.56828 -25.98663 -24.16328 -22.99801 -22.51533 -21.22677 -20.49875 -20.09049 -18.80499 -17.85032 -16.52269 -16.33426 -15.50300 -15.28157 -15.20552 -14.63600 -14.42563 -14.27608 -13.94190 -13.80319 -13.71400 -13.65753 -13.42640 -13.07510 -12.77692 -12.63394 -12.30150 -11.99443 -11.74205 -11.71640 -11.55578 -11.43993 -11.20693 -11.15694 -11.09976 -11.00334 -10.83607 -10.64014 -10.57954 -10.41205 -10.22298 -10.10589 -9.97397 -9.97201 -9.43891 -9.12705 -8.57343 -8.46043 -8.30085 -6.31739 -4.00696 2.83307 3.40579 3.43838 3.47114 3.62396 4.27008 4.30943 4.38696 4.55729 4.60143 4.75178 4.81226 4.90780 5.04467 5.10999 5.16878 5.24913 5.31581 5.36338 5.41636 5.42435 5.44329 5.57056 5.58607 5.63972 5.67424 5.71304 5.79570 5.81173 5.85133 5.96207 6.03282 6.08209 6.12492 6.15669 6.18012 6.23517 6.35111 6.54204 6.55595 6.57371 6.76341 6.98059 7.00716 7.03439 7.10451 7.37011 7.51753 8.18580 8.23969 8.49307 8.79694 8.91773 9.70261 11.08235 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.038351 B = 0.002128 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.927444 B =13153.747513 C =13405.446872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.166 3.834 9 H 0.086 0.914 10 N -0.748 5.748 11 C 0.700 3.300 12 O -0.594 6.594 13 N -0.738 5.738 14 C 0.147 3.853 15 C -0.065 4.065 16 C -0.125 4.125 17 C -0.125 4.125 18 C 0.023 3.977 19 C -0.591 4.591 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.915 5.915 23 Si 1.069 2.931 24 H -0.289 1.289 25 H -0.286 1.286 26 H -0.290 1.290 27 C -0.121 4.121 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.392 0.608 40 H 0.393 0.607 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.029 0.971 48 H 0.067 0.933 49 H 0.009 0.991 50 H 0.009 0.991 51 H 0.269 0.731 52 H 0.066 0.934 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.913 -17.321 -9.114 28.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.169 4.169 8 C 0.061 3.939 9 H 0.104 0.896 10 N -0.403 5.403 11 C 0.400 3.600 12 O -0.472 6.472 13 N -0.393 5.393 14 C 0.023 3.977 15 C -0.066 4.066 16 C -0.182 4.182 17 C -0.183 4.183 18 C -0.015 4.015 19 C -0.629 4.629 20 H 0.072 0.928 21 C -0.191 4.191 22 N -0.551 5.551 23 Si 0.898 3.102 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.216 1.216 27 C -0.159 4.159 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.225 0.775 40 H 0.228 0.772 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.027 0.973 50 H 0.027 0.973 51 H 0.080 0.920 52 H 0.085 0.915 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.025 -15.721 -8.347 26.792 hybrid contribution -0.945 -1.378 -0.691 1.809 sum -20.970 -17.099 -9.039 28.527 Atomic orbital electron populations 1.21822 0.95851 1.01488 1.01994 1.21556 0.95947 0.96139 1.02005 1.21129 0.94442 0.96127 0.98586 0.90846 1.21671 1.00687 0.95744 0.97233 1.21498 0.95329 0.96634 1.02068 1.21951 0.95779 1.01705 0.97470 1.20729 0.78798 0.95961 0.98448 0.89593 1.45216 1.07409 1.18808 1.68909 1.16031 0.82203 0.83140 0.78632 1.90906 1.65693 1.34646 1.56005 1.45351 1.04627 1.21367 1.67961 1.21463 0.91945 0.86310 0.97953 1.20763 0.91168 0.98627 0.96048 1.21740 1.01945 0.99226 0.95333 1.21740 1.02261 0.95397 0.98854 1.19216 0.95920 0.91347 0.95002 1.22000 0.91291 1.04245 1.45385 0.92849 1.25793 1.06223 0.93277 0.93855 1.70739 1.16219 1.24401 1.43748 0.83539 0.74874 0.75626 0.76161 1.21608 1.21130 1.21581 1.21852 0.95811 0.95774 1.02454 0.92930 0.92725 0.92456 0.92004 0.91974 0.91991 0.91683 0.91829 0.91732 0.91276 0.92079 0.77461 0.77201 0.92178 0.92185 0.91360 0.95182 0.93498 0.93490 0.95170 0.91367 0.97287 0.97275 0.92022 0.91490 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.56 2.19 -90.62 -0.20 -0.75 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 5 C -0.12 -0.76 4.96 -26.73 -0.13 -0.89 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.13 -1.29 5.49 -26.73 -0.15 -1.43 16 8 C 0.17 1.69 2.45 -67.96 -0.17 1.52 16 9 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 10 N -0.75 -8.36 5.08 -58.71 -0.30 -8.65 16 11 C 0.70 10.90 8.53 -86.92 -0.74 10.16 16 12 O -0.59 -11.80 16.00 5.29 0.08 -11.71 16 13 N -0.74 -11.00 4.96 -65.22 -0.32 -11.33 16 14 C 0.15 2.67 4.56 -4.04 -0.02 2.66 16 15 C -0.07 -1.26 0.54 -154.51 -0.08 -1.35 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 17 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 18 C 0.02 0.56 3.35 -27.88 -0.09 0.46 16 19 C -0.59 -15.92 7.65 -34.44 -0.26 -16.19 16 20 H 0.05 1.40 5.68 -52.48 -0.30 1.10 16 21 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 22 N -0.91 -27.87 13.65 55.43 0.76 -27.12 16 23 Si 1.07 25.04 29.90 -169.99 -5.08 19.96 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 27 C -0.12 -0.88 4.67 -26.76 -0.12 -1.01 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.39 3.30 8.62 -40.82 -0.35 2.95 16 40 H 0.39 4.91 6.18 -40.82 -0.25 4.66 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 48 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 49 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 50 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 51 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 52 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 53 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -31.88 399.52 -10.32 -42.20 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -10.06 Total: 3.47 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -1.41 Total: -12.84 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.13 Total: -47.10 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.88 -10.32 -42.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353729899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.504 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds