Wall clock time and date at job start Tue Mar 31 2020 09:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47283 * 2 1 4 4 H 1.08996 * 109.47518 * 55.00102 * 3 2 1 5 5 C 1.53004 * 109.47273 * 295.00419 * 3 2 1 6 6 C 1.53003 * 109.47150 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47330 * 59.99680 * 6 5 3 8 8 C 1.52994 * 109.47273 * 300.00255 * 7 6 5 9 9 H 1.09005 * 109.46952 * 300.00178 * 8 7 6 10 10 N 1.46492 * 109.47379 * 180.02562 * 8 7 6 11 11 C 1.34781 * 120.00297 * 84.99463 * 10 8 7 12 12 O 1.21583 * 119.99716 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00055 * 180.02562 * 11 10 8 14 14 C 1.46504 * 119.99669 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46858 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47258 * 60.00017 * 15 14 13 17 17 C 1.53001 * 109.47247 * 299.99871 * 15 14 13 18 18 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.52996 * 109.47379 * 175.00428 * 3 2 1 28 28 H 1.08995 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46838 * 299.99870 * 1 2 3 30 30 H 1.08993 * 109.46986 * 59.99686 * 1 2 3 31 31 H 1.09004 * 109.46838 * 240.00130 * 2 1 3 32 32 H 1.08994 * 109.47389 * 120.00666 * 2 1 3 33 33 H 1.08997 * 109.47138 * 299.99719 * 5 3 2 34 34 H 1.08996 * 109.47257 * 59.99671 * 5 3 2 35 35 H 1.09002 * 109.47042 * 179.97438 * 6 5 3 36 36 H 1.09005 * 109.46749 * 299.99591 * 6 5 3 37 37 H 1.08999 * 109.46716 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46638 * 59.99991 * 7 6 5 39 39 H 0.97003 * 119.99978 * 264.99946 * 10 8 7 40 40 H 0.96994 * 120.00039 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.46998 * 59.99975 * 14 13 11 42 42 H 1.09004 * 109.47081 * 299.99839 * 14 13 11 43 43 H 1.09000 * 109.47249 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.46941 * 299.99988 * 16 15 14 45 45 H 1.08996 * 109.47114 * 60.00036 * 16 15 14 46 46 H 1.08996 * 109.47108 * 300.00452 * 17 15 14 47 47 H 1.08996 * 109.47041 * 59.99958 * 17 15 14 48 48 H 1.09000 * 109.47105 * 180.02562 * 17 15 14 49 49 H 1.09003 * 109.46825 * 60.00325 * 18 15 14 50 50 H 1.08996 * 109.47396 * 299.99898 * 18 15 14 51 51 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 52 52 H 1.08997 * 109.47223 * 60.00164 * 27 3 2 53 53 H 1.09002 * 109.46905 * 300.00077 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 2.1458 3.5689 -1.3076 7 6 3.6707 3.5701 -1.1822 8 6 4.0755 2.8860 0.1251 9 1 3.6412 3.4253 0.9670 10 7 5.5354 2.8878 0.2455 11 6 6.1679 3.9603 0.7615 12 8 5.5266 4.9262 1.1275 13 7 7.5111 3.9621 0.8717 14 6 8.1984 5.1277 1.4332 15 6 9.7070 4.8733 1.4451 16 6 10.1951 4.6333 0.0151 17 6 10.0098 3.6416 2.3009 18 6 10.4249 6.0909 2.0309 19 6 11.9109 5.8406 2.0421 20 1 12.3041 4.9063 1.6692 21 6 12.7686 6.8039 2.5294 22 7 12.2900 7.9413 2.9840 23 14 14.6107 6.4939 2.5427 24 1 14.9960 5.8554 3.8269 25 1 15.3309 7.7842 2.3957 26 1 14.9696 5.5955 1.4160 27 6 3.5648 1.4443 0.1256 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1492 34 1 0.5489 2.1253 -1.3969 35 1 1.8578 4.0561 -2.2391 36 1 1.7115 4.1081 -0.4657 37 1 4.0344 4.5977 -1.1828 38 1 4.1048 3.0308 -2.0241 39 1 6.0471 2.1170 -0.0463 40 1 8.0227 3.1916 0.5794 41 1 7.8503 5.2990 2.4518 42 1 7.9831 6.0051 0.8232 43 1 11.2700 4.4525 0.0236 44 1 9.6837 3.7661 -0.4026 45 1 9.9795 5.5107 -0.5945 46 1 9.6620 3.8126 3.3196 47 1 9.4984 2.7744 1.8832 48 1 11.0846 3.4607 2.3097 49 1 10.0772 6.2623 3.0497 50 1 10.2092 6.9681 1.4210 51 1 11.3335 8.1024 2.9768 52 1 3.9994 0.9053 -0.7162 53 1 3.8532 0.9569 1.0570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353729899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:09 Heat of formation + Delta-G solvation = -106.514346 kcal Electronic energy + Delta-G solvation = -26376.414073 eV Core-core repulsion = 22858.885911 eV Total energy + Delta-G solvation = -3517.528162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39953 -39.87129 -38.74415 -35.87659 -35.44779 -34.23064 -33.59587 -30.92816 -29.54713 -28.60165 -28.05036 -27.44013 -25.05852 -24.57022 -23.33560 -22.24382 -21.40401 -20.83333 -20.27351 -19.22451 -18.44863 -17.43475 -16.63896 -16.32422 -16.08648 -15.73176 -15.66758 -15.49767 -15.37057 -15.12718 -14.81464 -14.56548 -14.30180 -14.26913 -13.98090 -13.69269 -13.64094 -13.25831 -13.04876 -12.82462 -12.64170 -12.56682 -12.38436 -12.31479 -12.19126 -12.03433 -11.92316 -11.86590 -11.70014 -11.63380 -11.57942 -11.33203 -11.23677 -11.05561 -11.03460 -10.50465 -10.48617 -10.33940 -9.76199 -8.59326 -6.28324 1.54668 1.63966 1.68440 1.79975 2.13926 2.61145 3.23937 3.27547 3.65542 3.77868 3.87517 3.97293 3.98904 4.11093 4.12180 4.17644 4.32364 4.45064 4.49211 4.56238 4.57952 4.60779 4.63348 4.68548 4.76018 4.80772 4.86206 4.88699 4.97814 5.01941 5.06437 5.09532 5.12962 5.20228 5.25441 5.26121 5.28296 5.32433 5.33195 5.34245 5.40303 5.46216 5.50783 5.51238 5.60808 5.63131 5.64987 6.00449 6.10592 6.28056 6.65297 7.11180 7.52533 7.58506 8.80533 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.038351 B = 0.002128 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.927444 B =13153.747513 C =13405.446872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.082 4.082 4 H 0.062 0.938 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.126 4.126 8 C 0.164 3.836 9 H 0.056 0.944 10 N -0.728 5.728 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.724 5.724 14 C 0.162 3.838 15 C -0.058 4.058 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.587 4.587 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.947 5.947 23 Si 1.118 2.882 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.264 1.264 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.072 0.928 48 H 0.056 0.944 49 H -0.019 1.019 50 H -0.019 1.019 51 H 0.252 0.748 52 H 0.086 0.914 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.963 -21.089 -10.805 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.102 4.102 4 H 0.080 0.920 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.164 4.164 8 C 0.059 3.941 9 H 0.074 0.926 10 N -0.383 5.383 11 C 0.397 3.603 12 O -0.523 6.523 13 N -0.381 5.381 14 C 0.037 3.963 15 C -0.059 4.059 16 C -0.177 4.177 17 C -0.177 4.177 18 C -0.014 4.014 19 C -0.625 4.625 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.586 5.586 23 Si 0.940 3.060 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.188 1.188 27 C -0.149 4.149 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.248 0.752 40 H 0.248 0.752 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.091 0.909 48 H 0.075 0.925 49 H -0.001 1.001 50 H -0.001 1.001 51 H 0.061 0.939 52 H 0.104 0.896 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.090 -19.574 -10.073 29.802 hybrid contribution -1.029 -0.194 -0.173 1.062 sum -21.119 -19.767 -10.247 30.688 Atomic orbital electron populations 1.21830 0.95652 1.01838 1.01930 1.21516 0.96093 0.95153 1.02446 1.21117 0.93859 0.96890 0.98293 0.91978 1.21637 1.01294 0.94329 0.97468 1.21488 0.93916 0.98037 1.01923 1.21891 0.97150 0.99693 0.97711 1.20830 0.77865 0.97873 0.97501 0.92578 1.45059 1.07934 1.17980 1.67342 1.16204 0.82073 0.83490 0.78530 1.90884 1.66651 1.36807 1.57988 1.44986 1.04559 1.20816 1.67742 1.21012 0.91474 0.87038 0.96747 1.20595 0.91119 0.96903 0.97240 1.21672 1.01510 1.00561 0.93918 1.21675 1.01907 0.95912 0.98194 1.19153 0.95961 0.93003 0.93308 1.22374 0.92217 1.04249 1.43698 0.91587 1.27377 1.10916 0.92856 0.93334 1.70885 1.15103 1.26109 1.46455 0.82919 0.69615 0.75839 0.77619 1.20156 1.21680 1.18809 1.21796 0.96245 0.93380 1.03444 0.92391 0.93229 0.92136 0.91134 0.91932 0.90917 0.90761 0.91155 0.92948 0.94755 0.90610 0.75234 0.75243 0.94104 0.94156 0.92586 0.90933 0.94672 0.94637 0.90912 0.92546 1.00078 1.00082 0.93853 0.89577 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.67 71.98 0.70 -0.63 16 2 C -0.11 -1.00 5.40 30.59 0.17 -0.84 16 3 C -0.08 -0.92 2.19 -10.80 -0.02 -0.95 16 4 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.11 -1.18 4.96 30.60 0.15 -1.03 16 6 C -0.12 -1.76 5.92 30.60 0.18 -1.57 16 7 C -0.13 -2.39 5.49 30.59 0.17 -2.22 16 8 C 0.16 3.18 2.45 44.98 0.11 3.30 16 9 H 0.06 1.45 7.57 -2.38 -0.02 1.44 16 10 N -0.73 -14.95 5.08 -457.91 -2.33 -17.28 16 11 C 0.70 21.29 8.53 179.05 1.53 22.82 16 12 O -0.64 -26.24 16.00 -3.98 -0.06 -26.31 16 13 N -0.72 -20.52 4.96 -478.53 -2.37 -22.90 16 14 C 0.16 5.99 4.56 86.38 0.39 6.39 16 15 C -0.06 -2.22 0.54 -52.18 -0.03 -2.25 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 18 C 0.02 1.19 3.35 29.85 0.10 1.29 16 19 C -0.59 -31.93 7.65 25.60 0.20 -31.73 16 20 H 0.07 3.38 5.68 -2.91 -0.02 3.36 16 21 C -0.05 -2.79 5.46 84.65 0.46 -2.33 16 22 N -0.95 -59.71 13.65 21.45 0.29 -59.42 16 23 Si 1.12 49.99 29.90 68.60 2.05 52.04 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 27 C -0.11 -1.34 4.67 30.58 0.14 -1.20 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.48 6.56 -2.39 -0.02 0.46 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.70 6.56 -2.39 -0.02 0.68 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.41 5.48 8.62 -92.71 -0.80 4.68 16 40 H 0.41 8.76 6.18 -92.71 -0.57 8.19 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 44 H 0.07 1.84 6.86 -2.39 -0.02 1.83 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 48 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 49 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 50 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 51 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 52 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.07 399.52 2.58 -70.49 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.40 Total: 21.30 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.40 Total: -17.93 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.41 Total: -99.59 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.06 Total: -26.31 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -73.07 2.58 -70.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353729899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds