Wall clock time and date at job start Tue Mar 31 2020 11:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.62625 * 2 1 4 4 C 1.50466 * 109.79001 * 120.49081 * 2 1 3 5 5 C 1.54074 * 112.49426 * 213.95214 * 4 2 1 6 6 C 1.54057 * 112.81726 * 318.28585 * 5 4 2 7 7 C 1.50477 * 112.49606 * 318.28029 * 6 5 4 8 8 H 1.09003 * 109.63223 * 334.44279 * 7 6 5 9 9 N 1.46505 * 109.62844 * 214.05855 * 7 6 5 10 10 C 1.34778 * 119.99915 * 84.99851 * 9 7 6 11 11 O 1.21585 * 120.00179 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00224 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47422 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47310 * 300.00033 * 14 13 12 16 16 C 1.53000 * 109.47040 * 59.99962 * 14 13 12 17 17 C 1.52995 * 109.47131 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47060 * 180.02562 * 17 14 13 19 19 H 1.07998 * 120.00624 * 0.02562 * 18 17 14 20 20 C 1.37888 * 120.00192 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99512 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47089 * 89.99732 * 22 20 18 24 24 H 1.48499 * 109.47394 * 210.00126 * 22 20 18 25 25 H 1.48504 * 109.47181 * 330.00394 * 22 20 18 26 26 C 1.54240 * 108.52154 * 94.15745 * 7 6 5 27 27 C 1.45538 * 112.40209 * 280.01071 * 26 7 6 28 28 H 1.08994 * 109.47059 * 180.38671 * 1 2 3 29 29 H 1.09007 * 109.46578 * 300.38077 * 1 2 3 30 30 H 1.08997 * 109.47676 * 60.37994 * 1 2 3 31 31 H 1.09001 * 108.88123 * 334.72893 * 4 2 1 32 32 H 1.08997 * 108.88299 * 93.27856 * 4 2 1 33 33 H 1.09000 * 108.81181 * 79.14588 * 5 4 2 34 34 H 1.09000 * 108.81048 * 197.52653 * 5 4 2 35 35 H 1.08993 * 108.88359 * 79.06112 * 6 5 4 36 36 H 1.09004 * 108.87418 * 197.50793 * 6 5 4 37 37 H 0.96998 * 120.00002 * 265.00576 * 9 7 6 38 38 H 0.97003 * 120.00297 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46561 * 300.00029 * 13 12 10 40 40 H 1.09004 * 109.46989 * 59.99296 * 13 12 10 41 41 H 1.08995 * 109.47163 * 59.99420 * 15 14 13 42 42 H 1.08998 * 109.46927 * 179.97438 * 15 14 13 43 43 H 1.09004 * 109.46593 * 300.00270 * 15 14 13 44 44 H 1.08995 * 109.47262 * 59.99914 * 16 14 13 45 45 H 1.09005 * 109.47288 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46900 * 300.00013 * 16 14 13 47 47 H 1.08999 * 109.47685 * 300.00355 * 17 14 13 48 48 H 1.09000 * 109.47201 * 60.00344 * 17 14 13 49 49 H 0.96995 * 119.99916 * 180.02562 * 21 20 18 50 50 H 1.08998 * 108.89803 * 159.25846 * 26 7 6 51 51 H 1.09000 * 108.89479 * 40.76262 * 26 7 6 52 52 H 1.09000 * 108.90003 * 301.17978 * 27 26 7 53 53 H 1.08998 * 108.89612 * 182.68998 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0395 -0.7184 1.2200 5 6 3.3501 -0.1119 1.7569 6 6 4.3398 0.2591 0.6361 7 6 4.4042 -0.7862 -0.4445 8 1 4.1174 -1.7547 -0.0347 9 7 5.7673 -0.8611 -0.9762 10 6 6.6894 -1.6279 -0.3612 11 8 6.3898 -2.2579 0.6346 12 7 7.9434 -1.6964 -0.8501 13 6 8.9456 -2.5304 -0.1820 14 6 10.2745 -2.4317 -0.9338 15 6 10.0840 -2.9171 -2.3722 16 6 10.7473 -0.9766 -0.9449 17 6 11.3212 -3.3022 -0.2356 18 6 12.6303 -3.2045 -0.9757 19 1 12.7081 -2.5834 -1.8558 20 6 13.7289 -3.9082 -0.5294 21 7 13.6340 -4.6650 0.5420 22 14 15.3513 -3.7877 -1.4471 23 1 16.1528 -2.6683 -0.8907 24 1 16.1029 -5.0592 -1.2930 25 1 15.0880 -3.5397 -2.8875 26 6 3.4261 -0.3892 -1.5691 27 6 2.0481 -0.7348 -1.2533 28 1 -0.3633 -1.0276 0.0069 29 1 -0.3633 0.5198 0.8866 30 1 -0.3634 0.5079 -0.8933 31 1 1.2813 -0.6676 2.0015 32 1 2.2144 -1.7639 0.9664 33 1 3.1138 0.7857 2.3285 34 1 3.8263 -0.8346 2.4194 35 1 4.0320 1.2060 0.1928 36 1 5.3330 0.3808 1.0686 37 1 6.0062 -0.3586 -1.7708 38 1 8.1826 -1.1935 -1.6444 39 1 9.0810 -2.1847 0.8429 40 1 8.6089 -3.5671 -0.1743 41 1 9.3384 -2.2967 -2.8693 42 1 11.0307 -2.8464 -2.9078 43 1 9.7471 -3.9538 -2.3641 44 1 10.8830 -0.6308 0.0798 45 1 11.6939 -0.9062 -1.4809 46 1 10.0016 -0.3561 -1.4421 47 1 11.4568 -2.9561 0.7890 48 1 10.9846 -4.3389 -0.2273 49 1 14.4068 -5.1598 0.8563 50 1 3.7169 -0.9006 -2.4867 51 1 3.4920 0.6867 -1.7307 52 1 1.9835 -1.8097 -1.0842 53 1 1.4155 -0.4744 -2.1019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355252838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:26 Heat of formation + Delta-G solvation = -74.368495 kcal Electronic energy + Delta-G solvation = -26629.409098 eV Core-core repulsion = 23113.274885 eV Total energy + Delta-G solvation = -3516.134213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33294 -39.00187 -37.14554 -34.95095 -33.55482 -32.80945 -32.20475 -31.35525 -27.66201 -27.03706 -26.48743 -26.03434 -24.48558 -23.37734 -22.75191 -20.89172 -20.58644 -19.39705 -18.67507 -17.56237 -16.62283 -16.21909 -15.55339 -15.07791 -14.95800 -14.85726 -14.50730 -14.41101 -13.96391 -13.77339 -13.54921 -13.36965 -13.21959 -13.00462 -12.72643 -12.63687 -12.34174 -12.04954 -12.02065 -11.73926 -11.42317 -11.14240 -11.02177 -10.99095 -10.84209 -10.83569 -10.70737 -10.61817 -10.57069 -10.37211 -10.31286 -10.23124 -9.94334 -9.84948 -9.17793 -9.08755 -8.90788 -8.49756 -8.34475 -5.98509 -3.99677 2.90749 3.31597 3.38590 3.40360 3.47555 4.27772 4.31432 4.42400 4.48432 4.61689 4.78539 4.93049 4.96698 5.08809 5.10715 5.20384 5.32651 5.36885 5.43452 5.48386 5.53864 5.62594 5.66202 5.67512 5.74709 5.77704 5.80574 5.89678 5.95575 5.95928 6.04533 6.13087 6.19698 6.20603 6.22742 6.26109 6.32984 6.44612 6.63458 6.63911 6.65189 6.84811 7.08959 7.09875 7.11778 7.19858 7.66369 7.78962 8.00385 8.26050 8.42317 8.86828 9.05160 9.63150 11.12931 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.040094 B = 0.002216 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.184624 B =12635.029583 C =12893.317374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.128 4.128 7 C 0.167 3.833 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.699 3.301 11 O -0.593 6.593 12 N -0.738 5.738 13 C 0.148 3.852 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.510 4.510 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.260 0.740 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.063 0.937 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.239 11.835 -4.548 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.167 4.167 7 C 0.062 3.938 8 H 0.107 0.893 9 N -0.405 5.405 10 C 0.399 3.601 11 O -0.471 6.471 12 N -0.393 5.393 13 C 0.024 3.976 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.161 4.161 27 C -0.149 4.149 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.082 0.918 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.390 11.095 -3.497 27.022 hybrid contribution 1.276 0.484 -1.143 1.780 sum -23.115 11.579 -4.640 26.266 Atomic orbital electron populations 1.21885 0.95232 1.01732 1.01470 1.20938 0.95216 1.00021 0.94815 0.90896 1.21454 0.96740 1.00103 0.97213 1.21817 0.94800 1.00798 0.97647 1.21784 1.00016 0.98425 0.96428 1.20469 0.79900 1.00282 0.93139 0.89257 1.45271 1.10868 1.51661 1.32679 1.16025 0.80815 0.80104 0.83127 1.90908 1.79995 1.49279 1.26926 1.45385 1.09402 1.51924 1.32634 1.21463 0.86543 0.93711 0.95867 1.20907 0.93616 0.97064 0.95680 1.21750 1.00806 0.99708 0.96057 1.21751 1.00519 0.94852 1.01200 1.19087 0.91704 0.93973 0.95389 1.21185 0.94794 1.27221 1.11671 0.92281 1.25027 0.98897 0.95532 0.95148 1.69968 1.30291 1.29660 1.23427 0.86642 0.84104 0.77347 0.80158 1.20804 1.21361 1.19975 1.20734 0.95180 1.01879 0.98352 1.20479 0.95587 1.00851 0.97960 0.92712 0.92757 0.92846 0.92171 0.91922 0.92399 0.91715 0.92317 0.91542 0.77527 0.77264 0.92115 0.92112 0.95318 0.91523 0.93387 0.93392 0.91530 0.95321 0.96332 0.96315 0.93058 0.91483 0.91664 0.91826 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.88 37.16 0.33 -0.52 16 2 C -0.09 -0.62 2.39 -91.23 -0.22 -0.84 16 3 H 0.07 0.50 6.98 -51.93 -0.36 0.14 16 4 C -0.12 -0.94 4.89 -27.44 -0.13 -1.07 16 5 C -0.11 -1.05 5.85 -25.62 -0.15 -1.20 16 6 C -0.13 -1.27 5.03 -27.44 -0.14 -1.41 16 7 C 0.17 1.70 2.12 -68.54 -0.15 1.56 16 8 H 0.09 1.13 6.43 -51.93 -0.33 0.80 16 9 N -0.75 -8.36 4.99 -59.27 -0.30 -8.66 16 10 C 0.70 10.87 8.38 -86.92 -0.73 10.14 16 11 O -0.59 -11.73 16.02 5.29 0.08 -11.65 16 12 N -0.74 -10.96 4.96 -65.23 -0.32 -11.29 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 18 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.05 1.54 5.46 -17.81 -0.10 1.44 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.12 -0.90 4.77 -29.60 -0.14 -1.04 16 27 C -0.11 -0.75 4.69 -29.60 -0.14 -0.89 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 32 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.49 6.63 -51.93 -0.34 0.15 16 36 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 37 H 0.39 3.28 8.63 -40.82 -0.35 2.93 16 38 H 0.39 4.87 6.18 -40.82 -0.25 4.62 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 46 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 51 H 0.06 0.42 7.47 -51.93 -0.39 0.03 16 52 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 53 H 0.06 0.37 7.96 -51.93 -0.41 -0.04 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -31.18 393.91 -10.21 -41.39 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -9.89 Total: 3.36 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.44 Total: -9.55 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.12 Total: -45.73 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.18 -10.21 -41.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355252838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.978 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds