Wall clock time and date at job start Tue Mar 31 2020 11:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.62625 * 2 1 4 4 C 1.50466 * 109.79001 * 120.49081 * 2 1 3 5 5 C 1.54074 * 112.49426 * 213.95214 * 4 2 1 6 6 C 1.54057 * 112.81726 * 318.28585 * 5 4 2 7 7 C 1.50477 * 112.49606 * 318.28029 * 6 5 4 8 8 H 1.09003 * 109.63223 * 334.44279 * 7 6 5 9 9 N 1.46505 * 109.62844 * 214.05855 * 7 6 5 10 10 C 1.34778 * 119.99915 * 84.99851 * 9 7 6 11 11 O 1.21585 * 120.00179 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00224 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47422 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47310 * 300.00033 * 14 13 12 16 16 C 1.53000 * 109.47040 * 59.99962 * 14 13 12 17 17 C 1.52995 * 109.47131 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47060 * 180.02562 * 17 14 13 19 19 H 1.07998 * 120.00624 * 0.02562 * 18 17 14 20 20 C 1.37888 * 120.00192 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99512 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47089 * 89.99732 * 22 20 18 24 24 H 1.48499 * 109.47394 * 210.00126 * 22 20 18 25 25 H 1.48504 * 109.47181 * 330.00394 * 22 20 18 26 26 C 1.54240 * 108.52154 * 94.15745 * 7 6 5 27 27 C 1.45538 * 112.40209 * 280.01071 * 26 7 6 28 28 H 1.08994 * 109.47059 * 180.38671 * 1 2 3 29 29 H 1.09007 * 109.46578 * 300.38077 * 1 2 3 30 30 H 1.08997 * 109.47676 * 60.37994 * 1 2 3 31 31 H 1.09001 * 108.88123 * 334.72893 * 4 2 1 32 32 H 1.08997 * 108.88299 * 93.27856 * 4 2 1 33 33 H 1.09000 * 108.81181 * 79.14588 * 5 4 2 34 34 H 1.09000 * 108.81048 * 197.52653 * 5 4 2 35 35 H 1.08993 * 108.88359 * 79.06112 * 6 5 4 36 36 H 1.09004 * 108.87418 * 197.50793 * 6 5 4 37 37 H 0.96998 * 120.00002 * 265.00576 * 9 7 6 38 38 H 0.97003 * 120.00297 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46561 * 300.00029 * 13 12 10 40 40 H 1.09004 * 109.46989 * 59.99296 * 13 12 10 41 41 H 1.08995 * 109.47163 * 59.99420 * 15 14 13 42 42 H 1.08998 * 109.46927 * 179.97438 * 15 14 13 43 43 H 1.09004 * 109.46593 * 300.00270 * 15 14 13 44 44 H 1.08995 * 109.47262 * 59.99914 * 16 14 13 45 45 H 1.09005 * 109.47288 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46900 * 300.00013 * 16 14 13 47 47 H 1.08999 * 109.47685 * 300.00355 * 17 14 13 48 48 H 1.09000 * 109.47201 * 60.00344 * 17 14 13 49 49 H 0.96995 * 119.99916 * 180.02562 * 21 20 18 50 50 H 1.08998 * 108.89803 * 159.25846 * 26 7 6 51 51 H 1.09000 * 108.89479 * 40.76262 * 26 7 6 52 52 H 1.09000 * 108.90003 * 301.17978 * 27 26 7 53 53 H 1.08998 * 108.89612 * 182.68998 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0395 -0.7184 1.2200 5 6 3.3501 -0.1119 1.7569 6 6 4.3398 0.2591 0.6361 7 6 4.4042 -0.7862 -0.4445 8 1 4.1174 -1.7547 -0.0347 9 7 5.7673 -0.8611 -0.9762 10 6 6.6894 -1.6279 -0.3612 11 8 6.3898 -2.2579 0.6346 12 7 7.9434 -1.6964 -0.8501 13 6 8.9456 -2.5304 -0.1820 14 6 10.2745 -2.4317 -0.9338 15 6 10.0840 -2.9171 -2.3722 16 6 10.7473 -0.9766 -0.9449 17 6 11.3212 -3.3022 -0.2356 18 6 12.6303 -3.2045 -0.9757 19 1 12.7081 -2.5834 -1.8558 20 6 13.7289 -3.9082 -0.5294 21 7 13.6340 -4.6650 0.5420 22 14 15.3513 -3.7877 -1.4471 23 1 16.1528 -2.6683 -0.8907 24 1 16.1029 -5.0592 -1.2930 25 1 15.0880 -3.5397 -2.8875 26 6 3.4261 -0.3892 -1.5691 27 6 2.0481 -0.7348 -1.2533 28 1 -0.3633 -1.0276 0.0069 29 1 -0.3633 0.5198 0.8866 30 1 -0.3634 0.5079 -0.8933 31 1 1.2813 -0.6676 2.0015 32 1 2.2144 -1.7639 0.9664 33 1 3.1138 0.7857 2.3285 34 1 3.8263 -0.8346 2.4194 35 1 4.0320 1.2060 0.1928 36 1 5.3330 0.3808 1.0686 37 1 6.0062 -0.3586 -1.7708 38 1 8.1826 -1.1935 -1.6444 39 1 9.0810 -2.1847 0.8429 40 1 8.6089 -3.5671 -0.1743 41 1 9.3384 -2.2967 -2.8693 42 1 11.0307 -2.8464 -2.9078 43 1 9.7471 -3.9538 -2.3641 44 1 10.8830 -0.6308 0.0798 45 1 11.6939 -0.9062 -1.4809 46 1 10.0016 -0.3561 -1.4421 47 1 11.4568 -2.9561 0.7890 48 1 10.9846 -4.3389 -0.2273 49 1 14.4068 -5.1598 0.8563 50 1 3.7169 -0.9006 -2.4867 51 1 3.4920 0.6867 -1.7307 52 1 1.9835 -1.8097 -1.0842 53 1 1.4155 -0.4744 -2.1019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355252838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:25 Heat of formation + Delta-G solvation = -92.869667 kcal Electronic energy + Delta-G solvation = -26630.211370 eV Core-core repulsion = 23113.274885 eV Total energy + Delta-G solvation = -3516.936484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40223 -39.96719 -38.63637 -35.89920 -35.21510 -33.99175 -33.47384 -32.29670 -29.10919 -28.30888 -27.94791 -27.36514 -25.49357 -24.55318 -23.97483 -21.87937 -21.57089 -20.17382 -20.03705 -18.93468 -18.36332 -17.56987 -16.60874 -16.53188 -16.00335 -15.94433 -15.57694 -15.55859 -15.17982 -14.98557 -14.65250 -14.40680 -14.25178 -14.08553 -13.92838 -13.86419 -13.76433 -13.32676 -12.91199 -12.82870 -12.71490 -12.57253 -12.33080 -12.32307 -12.21641 -12.12469 -11.96423 -11.76110 -11.52569 -11.43125 -11.37337 -11.31971 -11.19612 -10.98241 -10.94687 -10.84175 -10.50693 -10.29984 -9.70497 -8.13135 -6.21027 1.42998 1.43673 1.54013 1.76062 2.21185 2.44973 3.21087 3.36561 3.63590 3.70082 3.98070 4.00231 4.10526 4.17161 4.22644 4.24194 4.27019 4.39873 4.48158 4.51051 4.70253 4.74800 4.75180 4.79087 4.83023 4.90799 4.98083 4.98231 5.09881 5.13490 5.13645 5.13948 5.16971 5.25226 5.31182 5.35443 5.39343 5.42089 5.47867 5.49233 5.50879 5.51132 5.55261 5.60924 5.64495 5.69341 5.81684 5.90785 6.08788 6.31832 6.94039 7.18535 7.46495 7.65889 8.99422 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.040094 B = 0.002216 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.184624 B =12635.029583 C =12893.317374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.123 4.123 7 C 0.164 3.836 8 H 0.059 0.941 9 N -0.728 5.728 10 C 0.696 3.304 11 O -0.640 6.640 12 N -0.725 5.725 13 C 0.163 3.837 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.961 3.039 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.259 1.259 26 C -0.113 4.113 27 C -0.111 4.111 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.411 0.589 38 H 0.409 0.591 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.056 0.944 46 H 0.070 0.930 47 H -0.015 1.015 48 H -0.015 1.015 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.085 0.915 52 H 0.051 0.949 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.504 14.483 -7.559 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.162 4.162 7 C 0.059 3.941 8 H 0.078 0.922 9 N -0.384 5.384 10 C 0.396 3.604 11 O -0.522 6.522 12 N -0.381 5.381 13 C 0.038 3.962 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.178 4.178 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.182 1.182 26 C -0.151 4.151 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.103 0.897 52 H 0.070 0.930 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.680 13.799 -6.575 29.885 hybrid contribution 1.593 -0.351 -0.140 1.637 sum -24.087 13.448 -6.715 28.392 Atomic orbital electron populations 1.21867 0.94356 1.01768 1.02146 1.20921 0.95915 0.99965 0.93856 0.90231 1.21427 0.96073 0.99332 0.98272 1.21805 0.95274 1.00616 0.97327 1.21745 0.98641 0.99436 0.96379 1.20594 0.79813 0.99044 0.94623 0.92247 1.45096 1.10387 1.50323 1.32625 1.16201 0.81252 0.80191 0.82734 1.90887 1.80784 1.51330 1.29206 1.45013 1.08665 1.51562 1.32893 1.21011 0.86976 0.93136 0.95078 1.20701 0.92214 0.97246 0.96215 1.21681 1.01522 0.99895 0.94646 1.21685 1.01274 0.93892 1.00912 1.18973 0.93403 0.93164 0.94282 1.21592 0.95217 1.26477 1.11736 0.90810 1.25992 1.03061 0.95376 0.96057 1.70131 1.31359 1.31072 1.25439 0.85508 0.79268 0.77134 0.79495 1.20175 1.21650 1.18247 1.20678 0.94295 1.03124 0.97018 1.20487 0.95597 1.00191 0.98605 0.93021 0.92515 0.91775 0.91577 0.93430 0.91156 0.94579 0.89824 0.94329 0.75286 0.75287 0.94212 0.94157 0.91109 0.92523 0.94558 0.94601 0.92478 0.91131 0.99692 0.99651 0.93212 0.90727 0.89653 0.93014 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.88 71.98 0.64 -0.70 16 2 C -0.09 -0.99 2.39 -11.19 -0.03 -1.02 16 3 H 0.08 0.83 6.98 -2.39 -0.02 0.81 16 4 C -0.11 -1.75 4.89 30.14 0.15 -1.60 16 5 C -0.11 -2.09 5.85 31.31 0.18 -1.91 16 6 C -0.12 -2.33 5.03 30.14 0.15 -2.18 16 7 C 0.16 3.16 2.12 44.59 0.09 3.26 16 8 H 0.06 1.54 6.43 -2.39 -0.02 1.53 16 9 N -0.73 -15.00 4.99 -459.71 -2.29 -17.29 16 10 C 0.70 21.34 8.38 179.05 1.50 22.84 16 11 O -0.64 -26.27 16.02 -3.98 -0.06 -26.34 16 12 N -0.72 -20.61 4.96 -478.54 -2.37 -22.98 16 13 C 0.16 6.05 4.56 86.38 0.39 6.44 16 14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 15 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 16 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 17 C 0.04 2.03 4.04 29.85 0.12 2.15 16 18 C -0.51 -27.58 7.65 25.60 0.20 -27.38 16 19 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 20 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 21 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 22 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 C -0.11 -1.31 4.77 28.74 0.14 -1.18 16 27 C -0.11 -1.23 4.69 28.74 0.13 -1.10 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.51 8.11 -2.38 -0.02 0.49 16 30 H 0.06 0.48 8.13 -2.39 -0.02 0.46 16 31 H 0.07 0.93 7.69 -2.39 -0.02 0.91 16 32 H 0.05 0.87 6.63 -2.39 -0.02 0.86 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.16 6.63 -2.39 -0.02 1.15 16 36 H 0.04 0.95 7.79 -2.38 -0.02 0.93 16 37 H 0.41 5.47 8.63 -92.71 -0.80 4.67 16 38 H 0.41 8.76 6.18 -92.71 -0.57 8.19 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 41 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 42 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 43 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 2.04 6.62 -2.38 -0.02 2.02 16 46 H 0.07 1.77 6.86 -2.38 -0.02 1.76 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 49 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 51 H 0.08 0.71 7.47 -2.39 -0.02 0.69 16 52 H 0.05 0.71 7.47 -2.39 -0.02 0.69 16 53 H 0.08 0.67 7.96 -2.39 -0.02 0.65 16 Total: -1.00 -71.87 393.91 2.35 -69.52 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.49 Total: 20.37 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.26 Total: -11.74 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -4.38 Total: -97.61 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.87 2.35 -69.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355252838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.347 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds