Wall clock time and date at job start Tue Mar 31 2020 09:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 C 1.52998 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47043 * 55.00090 * 4 3 2 6 6 C 1.53000 * 109.47352 * 174.99876 * 4 3 2 7 7 N 1.46504 * 109.47484 * 295.00347 * 4 3 2 8 8 C 1.34770 * 120.00482 * 154.99999 * 7 4 3 9 9 O 1.21281 * 119.99738 * 359.97438 * 8 7 4 10 10 C 1.50695 * 120.00208 * 179.97438 * 8 7 4 11 11 H 1.08999 * 109.47347 * 328.15131 * 10 8 7 12 12 C 1.53000 * 109.47179 * 88.15007 * 10 8 7 13 13 N 1.46902 * 109.47374 * 208.14901 * 10 8 7 14 14 C 1.46843 * 110.99993 * 289.29708 * 13 10 8 15 15 C 1.53044 * 109.52345 * 185.83701 * 14 13 10 16 16 C 1.53114 * 109.27499 * 300.81645 * 15 14 13 17 17 C 1.53001 * 109.51988 * 177.55856 * 16 15 14 18 18 C 1.50703 * 109.47141 * 65.32100 * 17 16 15 19 19 H 1.07992 * 119.99857 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99942 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46845 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46807 * 119.99581 * 22 20 18 25 25 H 1.48499 * 109.47094 * 239.99942 * 22 20 18 26 26 C 1.53124 * 109.16055 * 57.65620 * 16 15 14 27 27 C 1.46855 * 110.99676 * 53.49888 * 13 10 8 28 28 H 1.09002 * 109.46978 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47307 * 299.99872 * 1 2 3 30 30 H 1.08996 * 109.46794 * 60.00422 * 1 2 3 31 31 H 1.09008 * 109.46855 * 119.99926 * 2 1 3 32 32 H 1.08999 * 109.47307 * 240.00127 * 2 1 3 33 33 H 1.08992 * 109.47101 * 299.99946 * 3 2 1 34 34 H 1.08999 * 109.47024 * 59.99954 * 3 2 1 35 35 H 1.09003 * 109.46872 * 60.00109 * 6 4 3 36 36 H 1.08999 * 109.47377 * 179.97438 * 6 4 3 37 37 H 1.09001 * 109.47147 * 300.00407 * 6 4 3 38 38 H 0.96998 * 119.99585 * 334.99931 * 7 4 3 39 39 H 1.09001 * 109.47168 * 179.97438 * 12 10 8 40 40 H 1.09000 * 109.47452 * 300.00092 * 12 10 8 41 41 H 1.09001 * 109.47367 * 60.00419 * 12 10 8 42 42 H 1.08999 * 109.46291 * 305.85140 * 14 13 10 43 43 H 1.09002 * 109.46687 * 65.82037 * 14 13 10 44 44 H 1.09004 * 109.50104 * 180.87434 * 15 14 13 45 45 H 1.09002 * 109.50077 * 60.75730 * 15 14 13 46 46 H 1.08998 * 109.52591 * 297.75043 * 16 15 14 47 47 H 1.09000 * 109.46902 * 185.31967 * 17 16 15 48 48 H 1.08999 * 109.47416 * 305.31696 * 17 16 15 49 49 H 0.97007 * 119.99674 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.50115 * 182.39790 * 26 16 15 51 51 H 1.08998 * 109.50165 * 62.28952 * 26 16 15 52 52 H 1.08992 * 109.46175 * 294.17971 * 27 13 10 53 53 H 1.09000 * 109.45740 * 54.15191 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0801 2.8795 -0.1251 7 7 4.0579 0.8589 1.2527 8 6 5.2798 0.2924 1.3011 9 8 5.9753 0.2654 0.3079 10 6 5.7818 -0.3073 2.5892 11 1 5.3729 0.2489 3.4327 12 6 5.3376 -1.7687 2.6785 13 7 7.2489 -0.2387 2.6223 14 6 7.8414 -1.1765 1.6602 15 6 9.3631 -1.1837 1.8238 16 6 9.9037 0.2291 1.5869 17 6 11.4175 0.2411 1.8088 18 6 12.0853 -0.6139 0.7628 19 1 11.4896 -1.1160 0.0149 20 6 13.4567 -0.7559 0.7613 21 7 14.1821 -0.1449 1.6724 22 14 14.2845 -1.8163 -0.5348 23 1 13.2539 -2.3901 -1.4370 24 1 15.2279 -0.9855 -1.3253 25 1 15.0295 -2.9167 0.1279 26 6 9.2348 1.1944 2.5694 27 6 7.7170 1.1328 2.3841 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.7164 3.4691 0.7165 36 1 5.1701 2.8796 -0.1242 37 1 3.7171 3.3137 -1.0567 38 1 3.5014 0.8803 2.0469 39 1 5.7011 -2.2026 3.6100 40 1 4.2491 -1.8197 2.6540 41 1 5.7465 -2.3250 1.8351 42 1 7.4518 -2.1781 1.8422 43 1 7.5867 -0.8665 0.6467 44 1 9.8038 -1.8684 1.0990 45 1 9.6190 -1.5069 2.8329 46 1 9.6818 0.5374 0.5653 47 1 11.7876 1.2635 1.7329 48 1 11.6427 -0.1542 2.7993 49 1 15.1471 -0.2445 1.6711 50 1 9.5840 2.2090 2.3774 51 1 9.4888 0.9087 3.5902 52 1 7.4627 1.4318 1.3673 53 1 7.2370 1.8084 3.0921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399294185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:03 Heat of formation + Delta-G solvation = -88.231567 kcal Electronic energy + Delta-G solvation = -27231.551606 eV Core-core repulsion = 23714.816245 eV Total energy + Delta-G solvation = -3516.735361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66604 -39.53941 -37.69157 -36.24051 -34.67375 -34.35314 -32.42047 -31.87976 -30.93272 -29.01517 -27.61013 -26.07804 -25.12458 -23.63359 -22.88750 -22.38420 -21.63715 -21.09624 -20.50092 -18.47186 -18.12988 -17.68291 -16.71245 -16.42532 -16.07216 -15.80078 -15.58496 -15.47505 -15.18920 -14.91912 -14.64406 -14.57694 -14.18223 -14.16062 -13.62482 -13.59400 -13.33831 -13.28460 -13.15839 -13.05964 -12.92584 -12.75233 -12.61696 -12.45707 -12.36249 -12.19616 -12.10294 -11.93383 -11.84958 -11.64159 -11.61851 -11.52356 -11.26624 -11.16840 -10.84085 -10.71073 -10.52645 -10.03813 -9.07706 -8.18607 -6.27977 1.37086 1.37458 1.51149 1.64155 2.25022 2.40557 2.90818 3.13779 3.67809 3.86828 3.91575 4.00193 4.04025 4.09324 4.13549 4.18895 4.26786 4.36786 4.45709 4.47780 4.58723 4.60920 4.66128 4.73696 4.76259 4.79896 4.86504 4.87035 4.89632 4.90855 4.99037 5.03634 5.07309 5.11621 5.15410 5.25611 5.27955 5.28932 5.32367 5.36788 5.40886 5.45836 5.48053 5.56981 5.64853 5.79427 5.88083 6.08410 6.10798 6.30248 6.62112 6.87134 7.33642 7.39835 8.93479 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.002711 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.953427 B =10324.153290 C =10397.476001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.115 4.115 4 C 0.139 3.861 5 H 0.056 0.944 6 C -0.159 4.159 7 N -0.708 5.708 8 C 0.484 3.516 9 O -0.577 6.577 10 C 0.063 3.937 11 H 0.131 0.869 12 C -0.139 4.139 13 N -0.509 5.509 14 C 0.049 3.951 15 C -0.091 4.091 16 C -0.073 4.073 17 C 0.036 3.964 18 C -0.529 4.529 19 H 0.054 0.946 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.275 1.275 26 C -0.103 4.103 27 C 0.059 3.941 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.032 0.968 47 H -0.016 1.016 48 H -0.007 1.007 49 H 0.263 0.737 50 H 0.057 0.943 51 H 0.063 0.937 52 H 0.028 0.972 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.801 1.989 2.235 31.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.153 4.153 4 C 0.034 3.966 5 H 0.075 0.925 6 C -0.218 4.218 7 N -0.362 5.362 8 C 0.270 3.730 9 O -0.456 6.456 10 C -0.049 4.049 11 H 0.149 0.851 12 C -0.197 4.197 13 N -0.232 5.232 14 C -0.078 4.078 15 C -0.129 4.129 16 C -0.091 4.091 17 C -0.001 4.001 18 C -0.567 4.567 19 H 0.072 0.928 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.786 3.214 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.201 1.201 26 C -0.141 4.141 27 C -0.069 4.069 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.003 0.997 48 H 0.011 0.989 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.046 0.954 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -30.993 1.854 2.051 31.116 hybrid contribution 0.864 -0.007 -1.314 1.573 sum -30.129 1.847 0.737 30.195 Atomic orbital electron populations 1.21754 0.94834 1.01873 1.02287 1.21522 0.96514 0.96409 1.01795 1.21857 0.91391 0.97738 1.04303 1.20965 0.95124 0.93675 0.86806 0.92549 1.22130 1.00074 0.96378 1.03174 1.46180 1.17131 1.58731 1.14144 1.22420 0.81587 0.77470 0.91508 1.90692 1.56758 1.59553 1.38579 1.22158 0.88375 0.99935 0.94432 0.85121 1.21864 1.02470 0.91895 1.03456 1.62460 1.04687 1.06428 1.49637 1.22317 0.93853 0.96688 0.94954 1.21399 0.94299 0.96428 1.00798 1.21041 0.95443 0.95665 0.96990 1.18994 0.91389 0.94496 0.95219 1.21638 0.92228 1.29165 1.13701 0.92802 1.25955 0.98381 0.97404 0.98194 1.70113 1.06027 1.44985 1.36307 0.85453 0.78395 0.78573 0.78973 1.19000 1.20362 1.20058 1.21549 0.94430 0.98598 0.99526 1.22098 0.95307 0.89841 0.99631 0.92820 0.91772 0.92654 0.91688 0.93534 0.89806 0.89474 0.90887 0.95360 0.90727 0.74870 0.89636 0.89184 0.93338 0.89597 0.93820 0.93207 0.92747 0.94975 0.99734 0.98883 0.92864 0.92474 0.91816 0.95408 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.25 5.82 30.60 0.18 -1.07 16 3 C -0.12 -1.06 4.75 30.59 0.15 -0.91 16 4 C 0.14 2.21 2.57 44.99 0.12 2.32 16 5 H 0.06 1.26 7.58 -2.39 -0.02 1.25 16 6 C -0.16 -2.66 9.48 71.98 0.68 -1.98 16 7 N -0.71 -10.73 4.53 -442.54 -2.00 -12.73 16 8 C 0.48 11.25 5.98 87.66 0.52 11.78 16 9 O -0.58 -19.57 12.11 -3.03 -0.04 -19.61 16 10 C 0.06 1.28 2.95 44.17 0.13 1.41 16 11 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 12 C -0.14 -2.29 8.57 71.98 0.62 -1.68 16 13 N -0.51 -14.78 4.73 -875.51 -4.14 -18.92 16 14 C 0.05 1.70 4.62 86.33 0.40 2.10 16 15 C -0.09 -3.84 5.15 30.65 0.16 -3.68 16 16 C -0.07 -3.37 2.20 -10.71 -0.02 -3.39 16 17 C 0.04 2.04 4.45 29.85 0.13 2.18 16 18 C -0.53 -31.94 8.45 25.60 0.22 -31.73 16 19 H 0.05 3.19 7.08 -2.91 -0.02 3.17 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 21 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 22 Si 0.96 46.66 29.54 68.60 2.03 48.68 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C -0.10 -3.96 5.38 30.65 0.16 -3.79 16 27 C 0.06 1.86 4.89 86.32 0.42 2.29 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.63 7.75 -2.38 -0.02 0.61 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.41 3.37 8.60 -92.71 -0.80 2.57 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 1.01 6.19 -2.39 -0.01 0.99 16 42 H 0.09 2.60 5.82 -2.39 -0.01 2.58 16 43 H 0.04 1.73 5.67 -2.39 -0.01 1.72 16 44 H 0.05 2.26 7.05 -2.38 -0.02 2.24 16 45 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 50 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 51 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 52 H 0.03 1.01 6.09 -2.39 -0.01 0.99 16 53 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 Total: -1.00 -75.53 400.98 1.22 -74.31 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.05 Total: 13.42 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 5.04 Total: -26.29 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.86 Total: -90.51 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.04 Total: -19.61 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.53 1.22 -74.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399294185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.925 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds