Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46607 * 2 1 4 4 C 1.52998 * 109.46961 * 120.00019 * 2 1 3 5 5 C 1.52994 * 109.47163 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47278 * 299.99876 * 5 4 2 7 7 C 1.53007 * 109.46999 * 59.99836 * 6 5 4 8 8 C 1.53001 * 109.47012 * 300.00041 * 7 6 5 9 9 H 1.08991 * 109.47286 * 300.00249 * 8 7 6 10 10 N 1.46505 * 109.46923 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00230 * 300.00469 * 10 8 7 12 12 C 1.34781 * 119.99511 * 120.00222 * 10 8 7 13 13 O 1.21584 * 119.99970 * 359.97438 * 12 10 8 14 14 N 1.34771 * 119.99489 * 180.02562 * 12 10 8 15 15 C 1.46505 * 119.99622 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00138 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99649 * 16 15 14 19 19 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 20 20 C 1.50698 * 109.47592 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.37876 * 120.00356 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00117 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47306 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47019 * 120.00329 * 24 22 20 27 27 H 1.48498 * 109.47326 * 240.00104 * 24 22 20 28 28 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47056 * 300.00053 * 1 2 3 30 30 H 1.09000 * 109.46803 * 59.99971 * 1 2 3 31 31 H 1.09000 * 109.46962 * 59.99738 * 4 2 1 32 32 H 1.09004 * 109.47038 * 300.00356 * 4 2 1 33 33 H 1.08997 * 109.47461 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.47167 * 60.00113 * 5 4 2 35 35 H 1.09006 * 109.47215 * 300.00208 * 6 5 4 36 36 H 1.09000 * 109.47544 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47400 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46833 * 60.00138 * 7 6 5 39 39 H 1.08997 * 109.46893 * 269.99615 * 11 10 8 40 40 H 1.09002 * 109.47249 * 29.99928 * 11 10 8 41 41 H 1.09001 * 109.46741 * 149.99938 * 11 10 8 42 42 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 43 43 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 44 44 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 46 46 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 48 48 H 1.09002 * 109.46716 * 60.00091 * 18 16 15 49 49 H 1.09000 * 109.47486 * 180.02562 * 18 16 15 50 50 H 1.09001 * 109.47362 * 300.00732 * 18 16 15 51 51 H 1.09002 * 109.47103 * 300.00247 * 19 16 15 52 52 H 1.09001 * 109.47066 * 60.00169 * 19 16 15 53 53 H 0.96996 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0405 -0.7210 -1.2492 9 1 1.6776 -1.7487 -1.2494 10 7 1.5522 -0.0298 -2.4452 11 6 1.9057 1.3730 -2.6762 12 6 0.7778 -0.6847 -3.3328 13 8 0.4848 -1.8490 -3.1413 14 7 0.3290 -0.0490 -4.4332 15 6 -0.5133 -0.7607 -5.3979 16 6 -0.8829 0.1818 -6.5450 17 6 -1.6479 1.3851 -5.9901 18 6 0.3921 0.6644 -7.2396 19 6 -1.7619 -0.5615 -7.5527 20 6 -2.1265 0.3670 -8.6823 21 1 -1.7669 1.3854 -8.6818 22 6 -2.9184 -0.0838 -9.7171 23 7 -3.3561 -1.3240 -9.7180 24 14 -3.3709 1.0674 -11.1169 25 1 -2.7577 2.3990 -10.8806 26 1 -2.8667 0.5109 -12.3981 27 1 -4.8477 1.2071 -11.1852 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -1.7489 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2341 2.1398 34 1 3.9330 0.3071 1.2499 35 1 3.7175 -2.4695 0.0001 36 1 5.1705 -1.4409 0.0004 37 1 3.9346 -1.2336 -2.1389 38 1 3.9335 0.3075 -1.2486 39 1 1.1541 2.0170 -2.2197 40 1 2.8796 1.5801 -2.2325 41 1 1.9465 1.5655 -3.7483 42 1 0.5630 0.8798 -4.5863 43 1 0.0316 -1.6181 -5.7929 44 1 -1.4218 -1.1040 -4.9031 45 1 -1.0213 1.9145 -5.2725 46 1 -1.9108 2.0568 -6.8073 47 1 -2.5563 1.0414 -5.4953 48 1 0.9371 -0.1929 -7.6349 49 1 0.1288 1.3362 -8.0566 50 1 1.0188 1.1938 -6.5219 51 1 -1.2166 -1.4185 -7.9480 52 1 -2.6703 -0.9055 -7.0582 53 1 -3.9135 -1.6411 -10.4458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000513141986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -64.686335 kcal Electronic energy + Delta-G solvation = -27347.642085 eV Core-core repulsion = 23831.927722 eV Total energy + Delta-G solvation = -3515.714363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53984 -38.73095 -37.04755 -35.00341 -33.53073 -32.71635 -32.03599 -30.02982 -27.20631 -27.06340 -26.55376 -26.49483 -25.65275 -23.17863 -22.32388 -21.51745 -20.14360 -19.41774 -18.65822 -17.37822 -16.55380 -16.23293 -15.70892 -15.11492 -14.79083 -14.55820 -14.47043 -14.25849 -14.17724 -13.74488 -13.35105 -13.09104 -13.03080 -12.98264 -12.74888 -12.52806 -12.30708 -12.12933 -12.07786 -12.05551 -11.77441 -11.35293 -11.14928 -11.11738 -11.01310 -10.82691 -10.73276 -10.63195 -10.54348 -10.43425 -10.37386 -10.21695 -9.87021 -9.85628 -9.18197 -8.89903 -8.81610 -8.37488 -8.34904 -5.98829 -3.99962 2.76992 3.30613 3.38706 3.40979 3.43131 4.13609 4.38392 4.46390 4.49752 4.61464 4.82581 4.90478 4.92504 5.15843 5.17969 5.18349 5.27625 5.34476 5.36784 5.44457 5.50058 5.55322 5.57370 5.67165 5.71370 5.75089 5.77180 5.78673 5.86122 5.89427 5.96083 6.07356 6.13225 6.19559 6.21462 6.26412 6.32282 6.44166 6.56075 6.63597 6.64583 6.84627 7.06852 7.09250 7.09439 7.17612 7.66374 7.78729 8.00149 8.17235 8.42081 8.83803 9.05111 9.63059 11.12694 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.034074 B = 0.002552 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.547424 B =10967.437589 C =10994.310000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.129 4.129 8 C 0.163 3.837 9 H 0.102 0.898 10 N -0.630 5.630 11 C 0.078 3.922 12 C 0.702 3.298 13 O -0.593 6.593 14 N -0.737 5.737 15 C 0.146 3.854 16 C -0.072 4.072 17 C -0.125 4.125 18 C -0.125 4.125 19 C 0.036 3.964 20 C -0.509 4.509 21 H 0.060 0.940 22 C 0.055 3.945 23 N -0.894 5.894 24 Si 0.888 3.112 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.393 0.607 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.066 0.934 50 H 0.026 0.974 51 H 0.019 0.981 52 H 0.019 0.981 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.340 5.734 21.115 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.167 4.167 8 C 0.059 3.941 9 H 0.120 0.880 10 N -0.367 5.367 11 C -0.066 4.066 12 C 0.404 3.596 13 O -0.471 6.471 14 N -0.393 5.393 15 C 0.023 3.977 16 C -0.072 4.072 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.002 4.002 20 C -0.548 4.548 21 H 0.078 0.922 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.230 0.770 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.085 0.915 50 H 0.045 0.955 51 H 0.037 0.963 52 H 0.037 0.963 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.990 4.755 21.107 25.765 hybrid contribution -0.209 1.117 -0.998 1.512 sum 13.781 5.873 20.109 25.076 Atomic orbital electron populations 1.21747 0.94691 1.02217 1.01333 1.21463 0.96263 0.99661 0.94381 0.91239 1.21575 0.95325 1.01026 0.97115 1.21558 0.95723 1.00683 0.97803 1.21497 1.00229 0.99706 0.94022 1.21909 0.95353 1.01002 0.98465 1.20947 0.92764 0.97891 0.82529 0.88006 1.47017 1.54062 1.11990 1.23662 1.21662 1.01003 0.82376 1.01518 1.15942 0.78896 0.84760 0.80031 1.90890 1.63243 1.15531 1.77467 1.45520 1.55166 1.15722 1.22934 1.21478 0.93164 0.94799 0.88298 1.20904 0.96545 0.95396 0.94395 1.21745 0.98873 0.97856 0.99787 1.21747 0.95989 1.00870 0.99660 1.19093 0.93735 0.95150 0.92208 1.21218 1.30443 0.97697 1.05411 0.92232 1.25020 0.96281 0.95006 0.98258 1.69979 1.35517 1.15346 1.32529 0.86597 0.78155 0.81085 0.82498 1.19826 1.21153 1.21147 0.92517 0.93039 0.92606 0.91646 0.91785 0.91968 0.92061 0.91652 0.91808 0.91532 0.91814 0.92880 0.90967 0.91585 0.76996 0.92103 0.92094 0.95429 0.91497 0.93373 0.93368 0.91483 0.95476 0.96305 0.96305 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.04 37.16 0.34 -1.12 16 2 C -0.10 -0.87 2.11 -90.62 -0.19 -1.06 16 3 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 4 C -0.11 -0.84 5.20 -26.74 -0.14 -0.98 16 5 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 6 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 7 C -0.13 -1.13 5.18 -26.73 -0.14 -1.27 16 8 C 0.16 1.74 1.97 -67.93 -0.13 1.61 16 9 H 0.10 1.38 6.90 -51.93 -0.36 1.03 16 10 N -0.63 -7.49 2.00 -179.67 -0.36 -7.85 16 11 C 0.08 0.67 9.26 59.85 0.55 1.23 16 12 C 0.70 11.26 8.28 -86.92 -0.72 10.54 16 13 O -0.59 -11.90 15.67 5.29 0.08 -11.81 16 14 N -0.74 -11.30 4.82 -65.22 -0.31 -11.62 16 15 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 16 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 17 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 18 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 19 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 20 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 21 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 22 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 23 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 24 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.65 7.60 -51.93 -0.39 0.26 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.49 6.66 -51.93 -0.35 0.14 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 41 H 0.07 0.55 6.36 -51.93 -0.33 0.22 16 42 H 0.39 5.16 3.89 -40.82 -0.16 5.00 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 46 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 50 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 51 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 53 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -31.08 394.60 -9.57 -40.65 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -9.92 Total: 1.51 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.73 Total: -7.25 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.06 Total: -45.26 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.08 -9.57 -40.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513141986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.039 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds