Wall clock time and date at job start Tue Mar 31 2020 11:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46607 * 2 1 4 4 C 1.52998 * 109.46961 * 120.00019 * 2 1 3 5 5 C 1.52994 * 109.47163 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47278 * 299.99876 * 5 4 2 7 7 C 1.53007 * 109.46999 * 59.99836 * 6 5 4 8 8 C 1.53001 * 109.47012 * 300.00041 * 7 6 5 9 9 H 1.08991 * 109.47286 * 300.00249 * 8 7 6 10 10 N 1.46505 * 109.46923 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00230 * 300.00469 * 10 8 7 12 12 C 1.34781 * 119.99511 * 120.00222 * 10 8 7 13 13 O 1.21584 * 119.99970 * 359.97438 * 12 10 8 14 14 N 1.34771 * 119.99489 * 180.02562 * 12 10 8 15 15 C 1.46505 * 119.99622 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00138 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99649 * 16 15 14 19 19 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 20 20 C 1.50698 * 109.47592 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00057 * 0.02562 * 20 19 16 22 22 C 1.37876 * 120.00356 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00117 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47306 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47019 * 120.00329 * 24 22 20 27 27 H 1.48498 * 109.47326 * 240.00104 * 24 22 20 28 28 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47056 * 300.00053 * 1 2 3 30 30 H 1.09000 * 109.46803 * 59.99971 * 1 2 3 31 31 H 1.09000 * 109.46962 * 59.99738 * 4 2 1 32 32 H 1.09004 * 109.47038 * 300.00356 * 4 2 1 33 33 H 1.08997 * 109.47461 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.47167 * 60.00113 * 5 4 2 35 35 H 1.09006 * 109.47215 * 300.00208 * 6 5 4 36 36 H 1.09000 * 109.47544 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47400 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46833 * 60.00138 * 7 6 5 39 39 H 1.08997 * 109.46893 * 269.99615 * 11 10 8 40 40 H 1.09002 * 109.47249 * 29.99928 * 11 10 8 41 41 H 1.09001 * 109.46741 * 149.99938 * 11 10 8 42 42 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 43 43 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 44 44 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 46 46 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 47 47 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 48 48 H 1.09002 * 109.46716 * 60.00091 * 18 16 15 49 49 H 1.09000 * 109.47486 * 180.02562 * 18 16 15 50 50 H 1.09001 * 109.47362 * 300.00732 * 18 16 15 51 51 H 1.09002 * 109.47103 * 300.00247 * 19 16 15 52 52 H 1.09001 * 109.47066 * 60.00169 * 19 16 15 53 53 H 0.96996 * 119.99885 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0405 -0.7210 -1.2492 9 1 1.6776 -1.7487 -1.2494 10 7 1.5522 -0.0298 -2.4452 11 6 1.9057 1.3730 -2.6762 12 6 0.7778 -0.6847 -3.3328 13 8 0.4848 -1.8490 -3.1413 14 7 0.3290 -0.0490 -4.4332 15 6 -0.5133 -0.7607 -5.3979 16 6 -0.8829 0.1818 -6.5450 17 6 -1.6479 1.3851 -5.9901 18 6 0.3921 0.6644 -7.2396 19 6 -1.7619 -0.5615 -7.5527 20 6 -2.1265 0.3670 -8.6823 21 1 -1.7669 1.3854 -8.6818 22 6 -2.9184 -0.0838 -9.7171 23 7 -3.3561 -1.3240 -9.7180 24 14 -3.3709 1.0674 -11.1169 25 1 -2.7577 2.3990 -10.8806 26 1 -2.8667 0.5109 -12.3981 27 1 -4.8477 1.2071 -11.1852 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -1.7489 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2341 2.1398 34 1 3.9330 0.3071 1.2499 35 1 3.7175 -2.4695 0.0001 36 1 5.1705 -1.4409 0.0004 37 1 3.9346 -1.2336 -2.1389 38 1 3.9335 0.3075 -1.2486 39 1 1.1541 2.0170 -2.2197 40 1 2.8796 1.5801 -2.2325 41 1 1.9465 1.5655 -3.7483 42 1 0.5630 0.8798 -4.5863 43 1 0.0316 -1.6181 -5.7929 44 1 -1.4218 -1.1040 -4.9031 45 1 -1.0213 1.9145 -5.2725 46 1 -1.9108 2.0568 -6.8073 47 1 -2.5563 1.0414 -5.4953 48 1 0.9371 -0.1929 -7.6349 49 1 0.1288 1.3362 -8.0566 50 1 1.0188 1.1938 -6.5219 51 1 -1.2166 -1.4185 -7.9480 52 1 -2.6703 -0.9055 -7.0582 53 1 -3.9135 -1.6411 -10.4458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513141986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:41 Heat of formation + Delta-G solvation = -81.046576 kcal Electronic energy + Delta-G solvation = -27348.351518 eV Core-core repulsion = 23831.927722 eV Total energy + Delta-G solvation = -3516.423796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62729 -39.77556 -38.52514 -36.03796 -35.17528 -33.87638 -33.39776 -30.83157 -29.07332 -27.96807 -27.95353 -27.71457 -26.79145 -24.88330 -23.34923 -22.24841 -21.17790 -20.33463 -20.02498 -18.73148 -18.34922 -17.56635 -16.84577 -16.52918 -15.98048 -15.59465 -15.58843 -15.41036 -15.12857 -14.90325 -14.58827 -14.48856 -14.36934 -13.94871 -13.83098 -13.72758 -13.64801 -13.31017 -13.08611 -12.89346 -12.80681 -12.68999 -12.59984 -12.50068 -12.34934 -12.22561 -12.02870 -11.94074 -11.80645 -11.54295 -11.46183 -11.27754 -11.16506 -11.12811 -10.94095 -10.82647 -10.51809 -10.16207 -9.40597 -8.13419 -6.21311 1.42340 1.43119 1.55036 1.66755 2.16488 2.44657 3.03870 3.21120 3.65117 3.81832 3.95000 3.97373 4.08821 4.17598 4.21516 4.23416 4.25504 4.47432 4.49573 4.52918 4.58919 4.67540 4.69882 4.72747 4.73870 4.78566 4.83881 4.90306 4.95967 4.99100 5.08264 5.10344 5.12114 5.15359 5.19459 5.28046 5.30499 5.36164 5.39859 5.43476 5.49338 5.49844 5.53898 5.57130 5.59141 5.65671 5.80502 5.90425 6.00199 6.31113 6.93606 7.01668 7.46428 7.59528 8.99495 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.034074 B = 0.002552 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.547424 B =10967.437589 C =10994.310000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.091 0.909 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.122 4.122 8 C 0.159 3.841 9 H 0.063 0.937 10 N -0.621 5.621 11 C 0.068 3.932 12 C 0.696 3.304 13 O -0.642 6.642 14 N -0.725 5.725 15 C 0.162 3.838 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.119 4.119 19 C 0.039 3.961 20 C -0.510 4.510 21 H 0.074 0.926 22 C -0.007 4.007 23 N -0.940 5.940 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.408 0.592 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.058 0.942 50 H 0.067 0.933 51 H -0.015 1.015 52 H -0.015 1.015 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.502 9.445 22.527 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.160 4.160 8 C 0.055 3.945 9 H 0.081 0.919 10 N -0.357 5.357 11 C -0.074 4.074 12 C 0.398 3.602 13 O -0.524 6.524 14 N -0.382 5.382 15 C 0.037 3.963 16 C -0.063 4.063 17 C -0.176 4.176 18 C -0.177 4.177 19 C 0.002 3.998 20 C -0.548 4.548 21 H 0.092 0.908 22 C -0.204 4.204 23 N -0.581 5.581 24 Si 0.785 3.215 25 H -0.179 1.179 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.247 0.753 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.004 0.996 52 H 0.003 0.997 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.196 8.534 22.551 29.046 hybrid contribution -0.869 -0.094 -1.364 1.620 sum 15.327 8.440 21.187 27.478 Atomic orbital electron populations 1.21727 0.95990 1.00650 1.01397 1.21427 0.95032 1.00605 0.93833 0.89093 1.21577 0.96318 1.00182 0.96855 1.21536 0.94590 1.01523 0.97556 1.21508 1.01066 0.98918 0.93915 1.21859 0.93395 1.02263 0.98486 1.21051 0.94251 0.96206 0.82965 0.91888 1.47074 1.52453 1.13334 1.22790 1.21983 1.02890 0.79981 1.02508 1.16147 0.79244 0.84321 0.80512 1.90861 1.65077 1.17956 1.78539 1.45164 1.54703 1.16074 1.22300 1.21033 0.92527 0.94304 0.88468 1.20698 0.96726 0.95538 0.93366 1.21669 0.98915 0.96842 1.00203 1.21673 0.95283 1.00521 1.00176 1.18977 0.93015 0.94588 0.93257 1.21609 1.29517 0.98332 1.05385 0.90772 1.25977 0.96534 0.96526 1.01345 1.70139 1.36737 1.17588 1.33633 0.85469 0.77690 0.79541 0.78773 1.17881 1.21106 1.21107 0.94956 0.91198 0.94192 0.93141 0.90315 0.90902 0.90540 0.93115 0.90334 0.93270 0.89569 0.91412 0.88312 0.90922 0.75258 0.94205 0.94244 0.91404 0.92341 0.94579 0.94541 0.92334 0.91406 0.99637 0.99659 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.04 71.98 0.65 -2.11 16 2 C -0.09 -1.41 2.11 -10.79 -0.02 -1.43 16 3 H 0.09 1.10 7.67 -2.39 -0.02 1.08 16 4 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 5 C -0.11 -1.16 5.92 30.59 0.18 -0.98 16 6 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 7 C -0.12 -1.90 5.18 30.60 0.16 -1.74 16 8 C 0.16 3.30 1.97 44.99 0.09 3.39 16 9 H 0.06 1.82 6.90 -2.39 -0.02 1.80 16 10 N -0.62 -13.97 2.00 -840.62 -1.68 -15.64 16 11 C 0.07 0.92 9.26 127.77 1.18 2.11 16 12 C 0.70 22.47 8.28 179.05 1.48 23.95 16 13 O -0.64 -27.19 15.67 -3.98 -0.06 -27.25 16 14 N -0.72 -21.70 4.82 -478.53 -2.31 -24.01 16 15 C 0.16 6.14 4.56 86.38 0.39 6.53 16 16 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 17 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 18 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 19 C 0.04 2.03 4.04 29.84 0.12 2.15 16 20 C -0.51 -27.46 7.65 25.60 0.20 -27.26 16 21 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 22 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 23 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 24 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.90 7.60 -2.39 -0.02 0.88 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 0.97 6.66 -2.38 -0.02 0.96 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.86 6.43 -2.39 -0.02 0.84 16 41 H 0.07 0.91 6.36 -2.39 -0.02 0.90 16 42 H 0.41 9.54 3.89 -92.71 -0.36 9.18 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 46 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 47 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 48 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.06 2.10 6.62 -2.39 -0.02 2.08 16 50 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 51 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 52 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 53 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.27 394.60 5.13 -67.14 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.50 Total: 18.75 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.37 Total: -7.32 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -3.70 Total: -97.07 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.27 5.13 -67.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513141986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.908 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds