Wall clock time and date at job start Tue Mar 31 2020 10:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 H 1.09001 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47320 * 299.99512 * 3 2 1 6 6 H 1.08000 * 120.00468 * 119.99855 * 5 3 2 7 7 C 1.37884 * 119.99994 * 299.99728 * 5 3 2 8 8 N 1.31509 * 119.99983 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46899 * 90.00297 * 9 7 5 11 11 H 1.48496 * 109.46785 * 210.00120 * 9 7 5 12 12 H 1.48490 * 109.47326 * 330.00199 * 9 7 5 13 13 N 1.46905 * 109.47131 * 59.99384 * 3 2 1 14 14 C 1.46899 * 111.00126 * 82.63952 * 13 3 2 15 15 H 1.09004 * 109.46821 * 327.69179 * 14 13 3 16 16 C 1.52994 * 109.47445 * 87.68743 * 14 13 3 17 17 C 1.50696 * 109.47268 * 207.69104 * 14 13 3 18 18 O 1.21279 * 120.00117 * 350.27112 * 17 14 13 19 19 N 1.34779 * 120.00214 * 170.26867 * 17 14 13 20 20 C 1.46497 * 120.00497 * 184.97559 * 19 17 14 21 21 C 1.53008 * 109.46844 * 83.41313 * 20 19 17 22 22 C 1.46501 * 119.99639 * 4.97741 * 19 17 14 23 23 C 1.53001 * 109.46921 * 241.75521 * 22 19 17 24 24 C 1.53001 * 109.47381 * 179.97438 * 23 22 19 25 25 C 1.53003 * 109.46716 * 60.00291 * 24 23 22 26 26 C 1.52999 * 109.47221 * 300.00243 * 25 24 23 27 27 C 1.52995 * 109.47056 * 121.76111 * 22 19 17 28 28 H 1.09003 * 109.47189 * 175.43434 * 1 2 3 29 29 H 1.09004 * 109.46898 * 295.42889 * 1 2 3 30 30 H 1.08996 * 109.47186 * 55.43154 * 1 2 3 31 31 H 1.09003 * 109.47169 * 240.00503 * 2 1 3 32 32 H 1.08991 * 109.47453 * 120.00309 * 2 1 3 33 33 H 0.96997 * 120.00118 * 179.97438 * 8 7 5 34 34 H 1.00895 * 111.00415 * 206.59307 * 13 3 2 35 35 H 1.09002 * 109.47022 * 302.32811 * 16 14 13 36 36 H 1.09002 * 109.46800 * 62.31926 * 16 14 13 37 37 H 1.08992 * 109.47968 * 182.32229 * 16 14 13 38 38 H 1.08994 * 109.47456 * 203.41810 * 20 19 17 39 39 H 1.09002 * 109.47044 * 323.41897 * 20 19 17 40 40 H 1.08997 * 109.46989 * 66.04995 * 21 20 19 41 41 H 1.09002 * 109.46681 * 186.04374 * 21 20 19 42 42 H 1.08997 * 109.47028 * 306.04343 * 21 20 19 43 43 H 1.08999 * 109.47599 * 1.75482 * 22 19 17 44 44 H 1.09001 * 109.47683 * 300.00366 * 23 22 19 45 45 H 1.09007 * 109.47069 * 60.00332 * 23 22 19 46 46 H 1.09001 * 109.47160 * 300.00870 * 24 23 22 47 47 H 1.08997 * 109.47745 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47066 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47320 * 60.00254 * 25 24 23 50 50 H 1.09001 * 109.47327 * 299.99833 * 26 25 24 51 51 H 1.09001 * 109.47534 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.47041 * 299.99230 * 27 22 19 53 53 H 1.08998 * 109.47544 * 59.99811 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5378 2.1529 -1.2304 6 1 0.9169 3.0310 -1.1315 7 6 1.8711 1.6818 -2.4827 8 7 2.6268 0.6123 -2.6033 9 14 1.2479 2.5620 -4.0080 10 1 2.2257 3.6041 -4.4123 11 1 1.0833 1.5827 -5.1121 12 1 -0.0604 3.1990 -3.7122 13 7 1.5502 2.1351 1.1994 14 6 2.4023 1.8442 2.3601 15 1 2.8024 0.8340 2.2731 16 6 3.5565 2.8473 2.4097 17 6 1.5865 1.9544 3.6224 18 8 0.4653 2.4149 3.5815 19 7 2.1029 1.5412 4.7968 20 6 1.2732 1.5464 6.0041 21 6 0.4338 0.2679 6.0516 22 6 3.4939 1.0870 4.8659 23 6 3.5307 -0.3781 5.3053 24 6 4.9835 -0.8528 5.3769 25 6 5.7501 0.0022 6.3879 26 6 5.7133 1.4673 5.9486 27 6 4.2600 1.9420 5.8772 28 1 -0.3634 -1.0244 -0.0818 29 1 -0.3633 0.4413 0.9282 30 1 -0.3633 0.5831 -0.8462 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.8609 0.2807 -3.4843 34 1 1.4824 3.1291 1.0407 35 1 4.1221 2.7965 1.4793 36 1 3.1579 3.8537 2.5380 37 1 4.2116 2.6065 3.2467 38 1 1.9135 1.5936 6.8849 39 1 0.6133 2.4138 5.9878 40 1 1.0903 -0.5932 6.1760 41 1 -0.2602 0.3200 6.8905 42 1 -0.1265 0.1665 5.1222 43 1 3.9570 1.1834 3.8838 44 1 3.0677 -0.4747 6.2874 45 1 2.9849 -0.9874 4.5848 46 1 5.4461 -0.7563 4.3947 47 1 5.0098 -1.8964 5.6904 48 1 6.7852 -0.3356 6.4386 49 1 5.2875 -0.0942 7.3702 50 1 6.1759 1.5638 4.9663 51 1 6.2598 2.0765 6.6685 52 1 4.2339 2.9858 5.5641 53 1 3.7971 1.8455 6.8592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517039273.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:48 Heat of formation + Delta-G solvation = -54.199440 kcal Electronic energy + Delta-G solvation = -28363.772248 eV Core-core repulsion = 24848.512631 eV Total energy + Delta-G solvation = -3515.259617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35690 -38.14642 -36.39858 -34.95400 -33.43543 -31.53287 -30.95891 -30.73955 -29.12492 -28.41150 -25.87154 -24.40247 -23.24174 -22.89639 -22.63890 -21.85544 -19.88923 -19.16461 -18.51154 -17.21824 -16.26268 -15.95036 -15.25102 -14.91491 -14.73198 -14.42376 -14.23508 -14.13034 -13.81350 -13.74386 -13.26210 -13.04724 -12.93529 -12.70133 -12.40811 -12.31228 -12.24762 -11.94938 -11.91898 -11.85716 -11.75950 -11.44647 -11.13509 -11.00482 -10.91044 -10.86008 -10.71369 -10.54685 -10.46148 -10.40515 -10.31842 -10.01636 -9.82746 -9.36343 -9.07898 -8.76757 -8.46149 -8.43138 -7.17431 -6.00690 -4.04990 3.11017 3.16669 3.31113 3.38287 3.43319 4.42152 4.46040 4.58252 4.62024 4.87628 4.92545 5.04427 5.20064 5.21763 5.23907 5.26263 5.29344 5.33290 5.39419 5.42946 5.48682 5.52936 5.56674 5.60485 5.73515 5.83010 5.83906 5.88434 5.93659 6.00753 6.02222 6.05137 6.15798 6.17779 6.22396 6.31295 6.42382 6.58038 6.71592 6.79332 6.91081 7.28568 7.29875 7.51286 7.65730 7.78783 7.83303 7.85864 8.29208 8.41641 8.64163 8.72548 9.04043 9.59610 11.05497 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.003832 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.448415 B = 7304.342539 C = 7810.066385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.070 3.930 15 H 0.092 0.908 16 C -0.183 4.183 17 C 0.523 3.477 18 O -0.518 6.518 19 N -0.617 5.617 20 C 0.114 3.886 21 C -0.169 4.169 22 C 0.129 3.871 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.338 0.662 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.067 0.933 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 -1.470 19.338 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.547 4.547 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.292 5.292 14 C -0.044 4.044 15 H 0.110 0.890 16 C -0.242 4.242 17 C 0.311 3.689 18 O -0.392 6.392 19 N -0.352 5.352 20 C -0.009 4.009 21 C -0.228 4.228 22 C 0.025 3.975 23 C -0.169 4.169 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.167 4.167 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.799 -1.807 19.279 20.213 hybrid contribution 0.541 0.782 -1.003 1.382 sum 6.340 -1.026 18.276 19.372 Atomic orbital electron populations 1.21448 0.97361 0.97308 1.01639 1.21459 0.95250 0.98202 0.99189 1.19167 0.92833 0.91424 0.85423 0.98174 1.21144 1.31469 1.11986 0.90126 0.92185 1.24861 0.95068 0.94992 0.98852 1.69876 1.36908 1.22728 1.23372 0.86575 0.79336 0.79317 0.82675 1.20850 1.21283 1.19817 1.60373 1.50114 1.14922 1.03837 1.21414 0.91596 1.00196 0.91211 0.89010 1.22664 0.98840 0.99824 1.02891 1.21067 0.87321 0.76317 0.84227 1.90637 1.19655 1.43227 1.85631 1.48142 1.11917 1.66533 1.08637 1.21252 0.93844 0.98741 0.87051 1.22219 1.00129 0.97931 1.02477 1.21424 0.81695 0.93312 1.01022 1.22003 0.96949 0.95849 1.02104 1.21529 0.95086 0.99203 0.99900 1.21555 1.00150 0.95075 0.98962 1.21521 0.96004 0.96160 1.01897 1.21930 0.95432 0.99698 0.99682 0.96934 0.93746 0.92433 0.89429 0.97550 0.93008 0.84351 0.90980 0.92309 0.92010 0.91044 0.90619 0.92577 0.92265 0.91908 0.87828 0.91531 0.91326 0.91531 0.91761 0.91999 0.92114 0.91586 0.91809 0.91470 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.53 37.16 0.35 -2.49 16 2 C -0.10 -2.50 5.53 -26.73 -0.15 -2.65 16 3 C 0.22 5.36 2.12 -68.87 -0.15 5.22 16 4 H 0.00 0.02 7.31 -51.93 -0.38 -0.36 16 5 C -0.51 -13.64 7.26 -34.44 -0.25 -13.89 16 6 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.66 -14.39 4.88 -102.17 -0.50 -14.89 16 14 C 0.07 1.26 1.94 -68.87 -0.13 1.13 16 15 H 0.09 1.67 6.34 -51.93 -0.33 1.34 16 16 C -0.18 -2.77 8.72 37.15 0.32 -2.44 16 17 C 0.52 9.18 6.99 -10.99 -0.08 9.10 16 18 O -0.52 -11.05 16.12 5.56 0.09 -10.96 16 19 N -0.62 -8.27 2.39 -166.11 -0.40 -8.66 16 20 C 0.11 1.35 5.36 -4.04 -0.02 1.33 16 21 C -0.17 -1.96 9.96 37.16 0.37 -1.59 16 22 C 0.13 1.40 1.68 -67.93 -0.11 1.29 16 23 C -0.13 -1.28 4.49 -26.73 -0.12 -1.40 16 24 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 25 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 26 C -0.12 -0.90 5.92 -26.70 -0.16 -1.06 16 27 C -0.13 -1.15 4.90 -26.71 -0.13 -1.28 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 30 H 0.06 1.45 7.06 -51.93 -0.37 1.09 16 31 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 32 H 0.01 0.13 7.29 -51.93 -0.38 -0.24 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.34 7.46 7.99 -39.29 -0.31 7.15 16 35 H 0.07 1.17 7.58 -51.93 -0.39 0.78 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.76 5.09 -51.93 -0.26 0.50 16 38 H 0.07 0.67 6.35 -51.93 -0.33 0.34 16 39 H 0.08 1.01 7.56 -51.93 -0.39 0.62 16 40 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 43 H 0.10 1.22 4.02 -51.93 -0.21 1.02 16 44 H 0.07 0.61 6.54 -51.93 -0.34 0.27 16 45 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 53 H 0.07 0.55 6.60 -51.93 -0.34 0.21 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -29.66 390.45 -9.66 -39.32 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -9.68 Total: 6.60 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.66 Total: -9.28 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.27 Total: -47.77 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.66 -9.66 -39.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517039273.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.879 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds