Wall clock time and date at job start Tue Mar 31 2020 10:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 H 1.09001 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47320 * 299.99512 * 3 2 1 6 6 H 1.08000 * 120.00468 * 119.99855 * 5 3 2 7 7 C 1.37884 * 119.99994 * 299.99728 * 5 3 2 8 8 N 1.31509 * 119.99983 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99840 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46899 * 90.00297 * 9 7 5 11 11 H 1.48496 * 109.46785 * 210.00120 * 9 7 5 12 12 H 1.48490 * 109.47326 * 330.00199 * 9 7 5 13 13 N 1.46905 * 109.47131 * 59.99384 * 3 2 1 14 14 C 1.46899 * 111.00126 * 82.63952 * 13 3 2 15 15 H 1.09004 * 109.46821 * 327.69179 * 14 13 3 16 16 C 1.52994 * 109.47445 * 87.68743 * 14 13 3 17 17 C 1.50696 * 109.47268 * 207.69104 * 14 13 3 18 18 O 1.21279 * 120.00117 * 350.27112 * 17 14 13 19 19 N 1.34779 * 120.00214 * 170.26867 * 17 14 13 20 20 C 1.46497 * 120.00497 * 184.97559 * 19 17 14 21 21 C 1.53008 * 109.46844 * 83.41313 * 20 19 17 22 22 C 1.46501 * 119.99639 * 4.97741 * 19 17 14 23 23 C 1.53001 * 109.46921 * 241.75521 * 22 19 17 24 24 C 1.53001 * 109.47381 * 179.97438 * 23 22 19 25 25 C 1.53003 * 109.46716 * 60.00291 * 24 23 22 26 26 C 1.52999 * 109.47221 * 300.00243 * 25 24 23 27 27 C 1.52995 * 109.47056 * 121.76111 * 22 19 17 28 28 H 1.09003 * 109.47189 * 175.43434 * 1 2 3 29 29 H 1.09004 * 109.46898 * 295.42889 * 1 2 3 30 30 H 1.08996 * 109.47186 * 55.43154 * 1 2 3 31 31 H 1.09003 * 109.47169 * 240.00503 * 2 1 3 32 32 H 1.08991 * 109.47453 * 120.00309 * 2 1 3 33 33 H 0.96997 * 120.00118 * 179.97438 * 8 7 5 34 34 H 1.00895 * 111.00415 * 206.59307 * 13 3 2 35 35 H 1.09002 * 109.47022 * 302.32811 * 16 14 13 36 36 H 1.09002 * 109.46800 * 62.31926 * 16 14 13 37 37 H 1.08992 * 109.47968 * 182.32229 * 16 14 13 38 38 H 1.08994 * 109.47456 * 203.41810 * 20 19 17 39 39 H 1.09002 * 109.47044 * 323.41897 * 20 19 17 40 40 H 1.08997 * 109.46989 * 66.04995 * 21 20 19 41 41 H 1.09002 * 109.46681 * 186.04374 * 21 20 19 42 42 H 1.08997 * 109.47028 * 306.04343 * 21 20 19 43 43 H 1.08999 * 109.47599 * 1.75482 * 22 19 17 44 44 H 1.09001 * 109.47683 * 300.00366 * 23 22 19 45 45 H 1.09007 * 109.47069 * 60.00332 * 23 22 19 46 46 H 1.09001 * 109.47160 * 300.00870 * 24 23 22 47 47 H 1.08997 * 109.47745 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.47066 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.47320 * 60.00254 * 25 24 23 50 50 H 1.09001 * 109.47327 * 299.99833 * 26 25 24 51 51 H 1.09001 * 109.47534 * 180.02562 * 26 25 24 52 52 H 1.08998 * 109.47041 * 299.99230 * 27 22 19 53 53 H 1.08998 * 109.47544 * 59.99811 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5378 2.1529 -1.2304 6 1 0.9169 3.0310 -1.1315 7 6 1.8711 1.6818 -2.4827 8 7 2.6268 0.6123 -2.6033 9 14 1.2479 2.5620 -4.0080 10 1 2.2257 3.6041 -4.4123 11 1 1.0833 1.5827 -5.1121 12 1 -0.0604 3.1990 -3.7122 13 7 1.5502 2.1351 1.1994 14 6 2.4023 1.8442 2.3601 15 1 2.8024 0.8340 2.2731 16 6 3.5565 2.8473 2.4097 17 6 1.5865 1.9544 3.6224 18 8 0.4653 2.4149 3.5815 19 7 2.1029 1.5412 4.7968 20 6 1.2732 1.5464 6.0041 21 6 0.4338 0.2679 6.0516 22 6 3.4939 1.0870 4.8659 23 6 3.5307 -0.3781 5.3053 24 6 4.9835 -0.8528 5.3769 25 6 5.7501 0.0022 6.3879 26 6 5.7133 1.4673 5.9486 27 6 4.2600 1.9420 5.8772 28 1 -0.3634 -1.0244 -0.0818 29 1 -0.3633 0.4413 0.9282 30 1 -0.3633 0.5831 -0.8462 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.8609 0.2807 -3.4843 34 1 1.4824 3.1291 1.0407 35 1 4.1221 2.7965 1.4793 36 1 3.1579 3.8537 2.5380 37 1 4.2116 2.6065 3.2467 38 1 1.9135 1.5936 6.8849 39 1 0.6133 2.4138 5.9878 40 1 1.0903 -0.5932 6.1760 41 1 -0.2602 0.3200 6.8905 42 1 -0.1265 0.1665 5.1222 43 1 3.9570 1.1834 3.8838 44 1 3.0677 -0.4747 6.2874 45 1 2.9849 -0.9874 4.5848 46 1 5.4461 -0.7563 4.3947 47 1 5.0098 -1.8964 5.6904 48 1 6.7852 -0.3356 6.4386 49 1 5.2875 -0.0942 7.3702 50 1 6.1759 1.5638 4.9663 51 1 6.2598 2.0765 6.6685 52 1 4.2339 2.9858 5.5641 53 1 3.7971 1.8455 6.8592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517039273.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:47 Heat of formation + Delta-G solvation = -70.449122 kcal Electronic energy + Delta-G solvation = -28364.476887 eV Core-core repulsion = 24848.512631 eV Total energy + Delta-G solvation = -3515.964256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52593 -39.21088 -38.10414 -36.04660 -35.18426 -33.23111 -32.12029 -31.62654 -30.31883 -29.78412 -27.77775 -25.69195 -25.13138 -23.86117 -23.37371 -23.05003 -20.93878 -20.65329 -19.85612 -18.75215 -17.71890 -17.32906 -16.85006 -16.24699 -15.88904 -15.62805 -15.56684 -15.15618 -15.02213 -14.94128 -14.76956 -14.38661 -14.20972 -13.87712 -13.69003 -13.65588 -13.39291 -13.25319 -13.19486 -13.05461 -12.90694 -12.82775 -12.61629 -12.52854 -12.29881 -12.21450 -11.97133 -11.85101 -11.77821 -11.68412 -11.38417 -11.30472 -11.23543 -11.13263 -10.82317 -10.58001 -10.44327 -9.57166 -8.93864 -8.09402 -6.19896 1.41300 1.43840 1.53520 1.73392 2.01739 2.43979 3.19688 3.48505 3.68383 3.72513 3.85482 4.08410 4.08945 4.15457 4.19281 4.22391 4.31962 4.40311 4.43617 4.51414 4.59261 4.62000 4.64178 4.68052 4.71714 4.73688 4.78267 4.80194 4.92762 4.94578 5.02289 5.09085 5.16805 5.19868 5.24858 5.27258 5.28572 5.33438 5.37661 5.41039 5.46621 5.52585 5.58722 5.70797 5.74704 5.78730 5.85172 6.27335 6.42210 6.52333 6.79383 7.00411 7.35097 7.48215 8.95933 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.003832 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.448415 B = 7304.342539 C = 7810.066385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.229 3.771 4 H -0.022 1.022 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.070 3.930 15 H 0.087 0.913 16 C -0.171 4.171 17 C 0.523 3.477 18 O -0.564 6.564 19 N -0.606 5.606 20 C 0.111 3.889 21 C -0.163 4.163 22 C 0.123 3.877 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.123 4.123 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.025 0.975 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.078 0.922 52 H 0.062 0.938 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -1.602 21.399 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.121 3.879 4 H -0.004 1.004 5 C -0.561 4.561 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.299 5.299 14 C -0.044 4.044 15 H 0.105 0.895 16 C -0.230 4.230 17 C 0.311 3.689 18 O -0.442 6.442 19 N -0.339 5.339 20 C -0.011 4.011 21 C -0.221 4.221 22 C 0.021 3.979 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.154 4.154 27 C -0.161 4.161 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.080 0.920 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.917 -1.957 21.384 22.560 hybrid contribution 0.241 0.776 -1.559 1.758 sum 7.157 -1.181 19.825 21.111 Atomic orbital electron populations 1.21287 0.96647 0.98102 1.00345 1.21344 0.95733 0.98008 0.98522 1.18909 0.91279 0.91624 0.86064 1.00448 1.21360 1.31427 1.11964 0.91373 0.93085 1.25526 0.95213 0.95621 1.01345 1.69983 1.37612 1.23656 1.23953 0.85661 0.78742 0.78394 0.79459 1.20092 1.20912 1.19905 1.60261 1.51412 1.14346 1.03924 1.21430 0.92082 1.00616 0.90253 0.89535 1.22531 0.98004 0.98929 1.03497 1.20899 0.86558 0.76314 0.85174 1.90616 1.21359 1.45748 1.86429 1.48140 1.13083 1.64761 1.07881 1.21440 0.94152 0.98255 0.87263 1.22167 1.00351 0.98229 1.01391 1.21639 0.80193 0.94724 1.01389 1.21952 0.98012 0.94421 1.02046 1.21527 0.93984 1.00033 1.00037 1.21541 1.00616 0.94356 0.98839 1.21527 0.94974 0.96716 1.02177 1.21894 0.96075 0.98822 0.99343 0.94914 0.94248 0.94451 0.91728 0.96406 0.92929 0.84874 0.92314 0.92280 0.88916 0.87458 0.92255 0.91266 0.90136 0.95605 0.89078 0.90236 0.93371 0.92424 0.90900 0.91018 0.91104 0.92099 0.90302 0.91954 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.09 9.53 71.98 0.69 -4.41 16 2 C -0.10 -4.86 5.53 30.59 0.17 -4.69 16 3 C 0.23 11.58 2.12 44.17 0.09 11.68 16 4 H -0.02 -1.19 7.31 -2.39 -0.02 -1.21 16 5 C -0.52 -28.70 7.26 25.60 0.19 -28.51 16 6 H 0.05 2.84 7.66 -2.91 -0.02 2.82 16 7 C 0.02 1.23 5.30 84.66 0.45 1.68 16 8 N -0.91 -51.67 11.32 21.45 0.24 -51.43 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.67 -30.05 4.88 -477.17 -2.33 -32.38 16 14 C 0.07 2.56 1.94 44.17 0.09 2.65 16 15 H 0.09 3.23 6.34 -2.38 -0.02 3.21 16 16 C -0.17 -5.17 8.72 71.98 0.63 -4.54 16 17 C 0.52 18.55 6.99 87.66 0.61 19.16 16 18 O -0.56 -24.71 16.12 -3.03 -0.05 -24.76 16 19 N -0.61 -15.67 2.39 -797.84 -1.90 -17.57 16 20 C 0.11 2.44 5.36 86.38 0.46 2.90 16 21 C -0.16 -3.55 9.96 71.98 0.72 -2.84 16 22 C 0.12 2.46 1.68 44.99 0.08 2.54 16 23 C -0.13 -2.22 4.49 30.59 0.14 -2.08 16 24 C -0.12 -1.70 5.92 30.60 0.18 -1.51 16 25 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 26 C -0.12 -1.40 5.92 30.61 0.18 -1.22 16 27 C -0.12 -1.83 4.90 30.61 0.15 -1.68 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.89 7.75 -2.38 -0.02 1.87 16 30 H 0.04 1.90 7.06 -2.39 -0.02 1.89 16 31 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 32 H 0.02 0.81 7.29 -2.39 -0.02 0.79 16 33 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.33 15.28 7.99 -89.70 -0.72 14.56 16 35 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.19 5.09 -2.39 -0.01 2.18 16 38 H 0.11 1.61 6.35 -2.39 -0.02 1.60 16 39 H 0.06 1.54 7.56 -2.39 -0.02 1.52 16 40 H 0.07 1.30 6.26 -2.39 -0.01 1.29 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.02 0.75 8.13 -2.39 -0.02 0.73 16 43 H 0.09 2.06 4.02 -2.39 -0.01 2.05 16 44 H 0.08 1.20 6.54 -2.39 -0.02 1.18 16 45 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.06 1.02 8.03 -2.39 -0.02 1.00 16 53 H 0.08 0.99 6.60 -2.39 -0.02 0.98 16 Total: -1.00 -65.45 390.45 3.14 -62.31 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.16 Total: 29.86 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 5.00 Total: -11.98 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -3.99 Total: -101.38 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.45 3.14 -62.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517039273.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.138 kcal (2) G-P(sol) polarization free energy of solvation -65.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds