Wall clock time and date at job start Tue Mar 31 2020 10:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 H 1.08997 * 109.47632 * 54.99847 * 3 2 1 5 5 C 1.53007 * 109.47059 * 294.99611 * 3 2 1 6 6 C 1.53005 * 109.47012 * 174.99876 * 3 2 1 7 7 H 1.09005 * 109.46054 * 180.78159 * 6 3 2 8 8 C 1.53035 * 109.46193 * 60.80713 * 6 3 2 9 9 C 1.53119 * 109.28012 * 180.79185 * 8 6 3 10 10 C 1.53127 * 109.14861 * 57.67196 * 9 8 6 11 11 C 1.53037 * 109.27589 * 302.33956 * 10 9 8 12 12 N 1.46842 * 109.46194 * 300.76588 * 6 3 2 13 13 C 1.46899 * 110.99701 * 305.85180 * 12 6 3 14 14 C 1.50702 * 109.47647 * 295.21477 * 13 12 6 15 15 O 1.21282 * 119.99460 * 5.39477 * 14 13 12 16 16 N 1.34772 * 119.99966 * 185.40253 * 14 13 12 17 17 C 1.46494 * 120.00622 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.47241 * 89.99907 * 17 16 14 19 19 C 1.46506 * 119.99448 * 179.97438 * 16 14 13 20 20 C 1.50707 * 109.46923 * 90.00375 * 19 16 14 21 21 H 1.07998 * 119.99656 * 359.97438 * 20 19 16 22 22 C 1.37871 * 119.99877 * 180.02562 * 20 19 16 23 23 N 1.31515 * 120.00415 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99930 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47413 * 59.99783 * 24 22 20 26 26 H 1.48500 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47397 * 299.99963 * 24 22 20 28 28 H 1.08996 * 109.47222 * 60.00694 * 1 2 3 29 29 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47525 * 299.99743 * 1 2 3 31 31 H 1.08995 * 109.47136 * 240.00104 * 2 1 3 32 32 H 1.08996 * 109.47222 * 119.99306 * 2 1 3 33 33 H 1.08990 * 109.46852 * 186.30228 * 5 3 2 34 34 H 1.08998 * 109.46986 * 306.30347 * 5 3 2 35 35 H 1.09000 * 109.46641 * 66.30440 * 5 3 2 36 36 H 1.09007 * 109.50392 * 300.74634 * 8 6 3 37 37 H 1.08998 * 109.50623 * 60.85853 * 8 6 3 38 38 H 1.08996 * 109.53263 * 297.76941 * 9 8 6 39 39 H 1.08997 * 109.57413 * 177.59581 * 9 8 6 40 40 H 1.09000 * 109.50132 * 182.39934 * 10 9 8 41 41 H 1.08997 * 109.50627 * 62.27699 * 10 9 8 42 42 H 1.08998 * 109.46391 * 299.16861 * 11 10 9 43 43 H 1.09001 * 109.45464 * 179.19178 * 11 10 9 44 44 H 1.08998 * 109.47195 * 55.21539 * 13 12 6 45 45 H 1.09008 * 109.47170 * 175.21514 * 13 12 6 46 46 H 1.09002 * 109.47545 * 209.99998 * 17 16 14 47 47 H 1.09005 * 109.46726 * 330.00085 * 17 16 14 48 48 H 1.09004 * 109.47443 * 300.00437 * 18 17 16 49 49 H 1.08997 * 109.47325 * 60.00229 * 18 17 16 50 50 H 1.09000 * 109.47409 * 180.02562 * 18 17 16 51 51 H 1.09007 * 109.47057 * 209.99683 * 19 16 14 52 52 H 1.08993 * 109.47324 * 330.00272 * 19 16 14 53 53 H 0.97000 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1266 -1.3075 6 6 3.5648 1.4444 0.1258 7 1 3.9268 2.4725 0.1397 8 6 4.1757 0.7050 -1.0667 9 6 5.7004 0.6922 -0.9266 10 6 6.0771 0.0296 0.4015 11 6 5.4111 0.7885 1.5516 12 7 3.9538 0.7717 1.3717 13 6 3.2737 1.3707 2.5278 14 6 3.7347 2.7952 2.6993 15 8 4.4737 3.2963 1.8785 16 7 3.3258 3.5121 3.7648 17 6 2.4329 2.9070 4.7560 18 6 3.2656 2.2355 5.8499 19 6 3.7745 4.8968 3.9317 20 6 2.8018 5.8254 3.2513 21 1 1.9363 5.4242 2.7450 22 6 3.0174 7.1870 3.2745 23 7 4.0716 7.6755 3.8907 24 14 1.8122 8.3379 2.4306 25 1 0.4664 8.1774 3.0378 26 1 2.2668 9.7415 2.5998 27 1 1.7447 8.0100 0.9838 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0920 3.1148 -1.3570 34 1 1.9748 1.5265 -2.1517 35 1 0.5503 2.2255 -1.3450 36 1 3.8035 -0.3193 -1.0893 37 1 3.8996 1.2134 -1.9905 38 1 6.0764 1.7151 -0.9429 39 1 6.1382 0.1298 -1.7512 40 1 7.1596 0.0556 0.5270 41 1 5.7349 -1.0052 0.4020 42 1 5.7642 1.8196 1.5590 43 1 5.6658 0.3106 2.4975 44 1 2.1963 1.3548 2.3640 45 1 3.5132 0.8008 3.4257 46 1 1.8056 3.6800 5.1999 47 1 1.8026 2.1620 4.2703 48 1 3.8930 1.4625 5.4061 49 1 3.8959 2.9804 6.3356 50 1 2.6012 1.7849 6.5872 51 1 3.8240 5.1372 4.9937 52 1 4.7620 5.0150 3.4859 53 1 4.2230 8.6334 3.9073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524811546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:55 Heat of formation + Delta-G solvation = -50.673002 kcal Electronic energy + Delta-G solvation = -28727.533391 eV Core-core repulsion = 25212.426691 eV Total energy + Delta-G solvation = -3515.106699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31652 -38.22889 -35.68716 -35.17116 -33.33637 -32.67884 -30.81847 -30.09299 -28.60866 -28.08088 -26.18164 -24.74624 -23.27494 -23.01034 -22.60524 -21.77599 -20.20847 -18.85835 -18.06815 -16.56938 -16.26395 -15.97356 -15.61710 -14.94557 -14.78540 -14.43638 -14.29441 -14.20761 -13.80547 -13.54299 -13.44418 -13.35031 -12.78022 -12.63428 -12.44243 -12.22852 -12.01904 -11.99705 -11.90424 -11.70212 -11.43807 -11.37048 -11.19508 -11.06866 -10.94780 -10.86616 -10.72193 -10.59640 -10.53516 -10.34852 -10.20780 -10.11648 -9.89339 -9.76100 -9.62804 -9.47947 -8.44150 -7.67074 -7.58241 -6.05029 -4.09728 3.30180 3.34640 3.35435 3.41753 3.98258 4.15093 4.43919 4.86080 4.95387 5.04695 5.11407 5.16665 5.26074 5.29412 5.29927 5.34192 5.39099 5.55084 5.58547 5.63561 5.66327 5.68460 5.76687 5.79569 5.80701 5.87990 5.92070 6.03315 6.03914 6.06367 6.08522 6.12837 6.18671 6.21850 6.23286 6.26896 6.31749 6.38036 6.48161 6.51115 6.58379 6.60982 6.73476 7.04319 7.29545 7.39870 7.44689 7.56162 7.91338 8.23355 8.43913 8.89486 9.09739 9.55394 11.02936 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.004812 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.590381 B = 5817.988937 C = 6249.922356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.067 0.933 5 C -0.146 4.146 6 C 0.073 3.927 7 H 0.081 0.919 8 C -0.108 4.108 9 C -0.121 4.121 10 C -0.110 4.110 11 C 0.037 3.963 12 N -0.507 5.507 13 C 0.027 3.973 14 C 0.476 3.524 15 O -0.539 6.539 16 N -0.596 5.596 17 C 0.106 3.894 18 C -0.168 4.168 19 C 0.246 3.754 20 C -0.524 4.524 21 H 0.055 0.945 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.029 0.971 52 H 0.041 0.959 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -17.396 -4.439 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.204 4.204 6 C -0.035 4.035 7 H 0.099 0.901 8 C -0.146 4.146 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.091 4.091 12 N -0.230 5.230 13 C -0.105 4.105 14 C 0.262 3.738 15 O -0.418 6.418 16 N -0.328 5.328 17 C -0.018 4.018 18 C -0.227 4.227 19 C 0.127 3.873 20 C -0.563 4.563 21 H 0.073 0.927 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.047 0.953 52 H 0.059 0.941 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.626 -17.436 -4.852 18.288 hybrid contribution -0.479 1.665 -0.162 1.740 sum -3.105 -15.772 -5.014 16.839 Atomic orbital electron populations 1.21857 0.96870 1.00870 1.01591 1.21535 0.94444 0.96392 1.02561 1.21237 0.94858 0.96291 0.98239 0.91440 1.21869 1.00889 1.00610 0.97010 1.21904 0.93969 0.98706 0.88906 0.90143 1.21654 0.94866 1.00763 0.97300 1.21569 0.96370 1.00906 0.97037 1.21510 0.99123 0.99498 0.94638 1.22302 0.87576 1.01489 0.97712 1.62423 1.07252 1.52101 1.01181 1.22417 1.00878 0.91653 0.95502 1.21639 0.81692 0.88661 0.81840 1.90563 1.37228 1.72165 1.41880 1.48411 1.46781 1.15243 1.22340 1.21401 0.92550 0.97723 0.90135 1.22213 1.00715 1.00762 0.98987 1.19228 0.96402 0.74799 0.96893 1.21371 1.09064 0.91187 1.34656 0.92667 1.24921 0.95574 0.98112 0.95430 1.69921 1.27205 1.13216 1.43067 0.86594 0.81154 0.79686 0.80193 1.20250 1.21169 1.20233 0.92962 0.93346 0.93063 0.92323 0.90820 0.92602 0.92713 0.92799 0.91561 0.91892 0.92043 0.92575 0.92184 0.91911 0.91157 0.91963 0.88100 0.88899 0.90050 0.91764 0.93078 0.92129 0.92146 0.95274 0.94112 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.11 -1.27 4.73 -26.73 -0.13 -1.40 16 3 C -0.09 -1.19 1.68 -90.61 -0.15 -1.34 16 4 H 0.07 1.04 6.27 -51.93 -0.33 0.71 16 5 C -0.15 -1.88 8.22 37.16 0.31 -1.58 16 6 C 0.07 1.10 1.28 -67.72 -0.09 1.01 16 7 H 0.08 1.56 5.71 -51.93 -0.30 1.27 16 8 C -0.11 -1.38 4.66 -26.65 -0.12 -1.51 16 9 C -0.12 -1.54 6.00 -26.60 -0.16 -1.70 16 10 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 11 C 0.04 0.55 5.00 -3.83 -0.02 0.53 16 12 N -0.51 -7.36 3.83 -228.12 -0.87 -8.24 16 13 C 0.03 0.41 3.78 -4.98 -0.02 0.39 16 14 C 0.48 9.49 7.07 -10.99 -0.08 9.41 16 15 O -0.54 -12.80 11.22 5.56 0.06 -12.73 16 16 N -0.60 -12.30 2.46 -175.05 -0.43 -12.73 16 17 C 0.11 1.68 5.86 -4.05 -0.02 1.65 16 18 C -0.17 -2.23 10.19 37.16 0.38 -1.86 16 19 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 20 C -0.52 -14.78 9.39 -34.44 -0.32 -15.11 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 24 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H 0.05 0.52 6.71 -51.93 -0.35 0.18 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 6.70 -51.93 -0.35 0.30 16 32 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.62 6.79 -51.93 -0.35 0.27 16 35 H 0.05 0.64 6.88 -51.93 -0.36 0.28 16 36 H 0.07 0.80 6.53 -51.93 -0.34 0.46 16 37 H 0.06 0.77 6.61 -51.93 -0.34 0.43 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.31 5.65 -51.93 -0.29 1.01 16 43 H 0.06 0.87 8.12 -51.93 -0.42 0.44 16 44 H 0.10 1.42 5.40 -51.93 -0.28 1.14 16 45 H 0.09 1.23 6.89 -51.92 -0.36 0.87 16 46 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 47 H 0.06 0.85 6.59 -51.93 -0.34 0.50 16 48 H 0.05 0.65 7.13 -51.93 -0.37 0.28 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 52 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 53 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 388.13 15.07 5.85 5.85 Total: -1.00 -30.95 388.13 -9.76 -40.71 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -9.73 Total: 2.36 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.36 Total: -6.22 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.57 Total: -46.88 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.06 Total: -12.73 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.95 -9.76 -40.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.959 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds