Wall clock time and date at job start Tue Mar 31 2020 10:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 H 1.08997 * 109.47632 * 54.99847 * 3 2 1 5 5 C 1.53007 * 109.47059 * 294.99611 * 3 2 1 6 6 C 1.53005 * 109.47012 * 174.99876 * 3 2 1 7 7 H 1.09005 * 109.46054 * 180.78159 * 6 3 2 8 8 C 1.53035 * 109.46193 * 60.80713 * 6 3 2 9 9 C 1.53119 * 109.28012 * 180.79185 * 8 6 3 10 10 C 1.53127 * 109.14861 * 57.67196 * 9 8 6 11 11 C 1.53037 * 109.27589 * 302.33956 * 10 9 8 12 12 N 1.46842 * 109.46194 * 300.76588 * 6 3 2 13 13 C 1.46899 * 110.99701 * 305.85180 * 12 6 3 14 14 C 1.50702 * 109.47647 * 295.21477 * 13 12 6 15 15 O 1.21282 * 119.99460 * 5.39477 * 14 13 12 16 16 N 1.34772 * 119.99966 * 185.40253 * 14 13 12 17 17 C 1.46494 * 120.00622 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.47241 * 89.99907 * 17 16 14 19 19 C 1.46506 * 119.99448 * 179.97438 * 16 14 13 20 20 C 1.50707 * 109.46923 * 90.00375 * 19 16 14 21 21 H 1.07998 * 119.99656 * 359.97438 * 20 19 16 22 22 C 1.37871 * 119.99877 * 180.02562 * 20 19 16 23 23 N 1.31515 * 120.00415 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99930 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47413 * 59.99783 * 24 22 20 26 26 H 1.48500 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47397 * 299.99963 * 24 22 20 28 28 H 1.08996 * 109.47222 * 60.00694 * 1 2 3 29 29 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47525 * 299.99743 * 1 2 3 31 31 H 1.08995 * 109.47136 * 240.00104 * 2 1 3 32 32 H 1.08996 * 109.47222 * 119.99306 * 2 1 3 33 33 H 1.08990 * 109.46852 * 186.30228 * 5 3 2 34 34 H 1.08998 * 109.46986 * 306.30347 * 5 3 2 35 35 H 1.09000 * 109.46641 * 66.30440 * 5 3 2 36 36 H 1.09007 * 109.50392 * 300.74634 * 8 6 3 37 37 H 1.08998 * 109.50623 * 60.85853 * 8 6 3 38 38 H 1.08996 * 109.53263 * 297.76941 * 9 8 6 39 39 H 1.08997 * 109.57413 * 177.59581 * 9 8 6 40 40 H 1.09000 * 109.50132 * 182.39934 * 10 9 8 41 41 H 1.08997 * 109.50627 * 62.27699 * 10 9 8 42 42 H 1.08998 * 109.46391 * 299.16861 * 11 10 9 43 43 H 1.09001 * 109.45464 * 179.19178 * 11 10 9 44 44 H 1.08998 * 109.47195 * 55.21539 * 13 12 6 45 45 H 1.09008 * 109.47170 * 175.21514 * 13 12 6 46 46 H 1.09002 * 109.47545 * 209.99998 * 17 16 14 47 47 H 1.09005 * 109.46726 * 330.00085 * 17 16 14 48 48 H 1.09004 * 109.47443 * 300.00437 * 18 17 16 49 49 H 1.08997 * 109.47325 * 60.00229 * 18 17 16 50 50 H 1.09000 * 109.47409 * 180.02562 * 18 17 16 51 51 H 1.09007 * 109.47057 * 209.99683 * 19 16 14 52 52 H 1.08993 * 109.47324 * 330.00272 * 19 16 14 53 53 H 0.97000 * 120.00252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1266 -1.3075 6 6 3.5648 1.4444 0.1258 7 1 3.9268 2.4725 0.1397 8 6 4.1757 0.7050 -1.0667 9 6 5.7004 0.6922 -0.9266 10 6 6.0771 0.0296 0.4015 11 6 5.4111 0.7885 1.5516 12 7 3.9538 0.7717 1.3717 13 6 3.2737 1.3707 2.5278 14 6 3.7347 2.7952 2.6993 15 8 4.4737 3.2963 1.8785 16 7 3.3258 3.5121 3.7648 17 6 2.4329 2.9070 4.7560 18 6 3.2656 2.2355 5.8499 19 6 3.7745 4.8968 3.9317 20 6 2.8018 5.8254 3.2513 21 1 1.9363 5.4242 2.7450 22 6 3.0174 7.1870 3.2745 23 7 4.0716 7.6755 3.8907 24 14 1.8122 8.3379 2.4306 25 1 0.4664 8.1774 3.0378 26 1 2.2668 9.7415 2.5998 27 1 1.7447 8.0100 0.9838 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.0920 3.1148 -1.3570 34 1 1.9748 1.5265 -2.1517 35 1 0.5503 2.2255 -1.3450 36 1 3.8035 -0.3193 -1.0893 37 1 3.8996 1.2134 -1.9905 38 1 6.0764 1.7151 -0.9429 39 1 6.1382 0.1298 -1.7512 40 1 7.1596 0.0556 0.5270 41 1 5.7349 -1.0052 0.4020 42 1 5.7642 1.8196 1.5590 43 1 5.6658 0.3106 2.4975 44 1 2.1963 1.3548 2.3640 45 1 3.5132 0.8008 3.4257 46 1 1.8056 3.6800 5.1999 47 1 1.8026 2.1620 4.2703 48 1 3.8930 1.4625 5.4061 49 1 3.8959 2.9804 6.3356 50 1 2.6012 1.7849 6.5872 51 1 3.8240 5.1372 4.9937 52 1 4.7620 5.0150 3.4859 53 1 4.2230 8.6334 3.9073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524811546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:54 Heat of formation + Delta-G solvation = -68.653963 kcal Electronic energy + Delta-G solvation = -28728.313104 eV Core-core repulsion = 25212.426691 eV Total energy + Delta-G solvation = -3515.886412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66848 -39.64196 -37.04466 -36.47711 -35.02613 -34.33368 -31.79515 -31.62042 -29.88018 -29.49823 -27.83670 -25.77567 -25.03187 -24.30370 -23.71635 -23.12788 -21.29022 -20.22215 -19.43328 -18.64760 -17.88685 -17.33464 -16.93944 -16.58015 -16.02639 -15.85787 -15.68154 -15.40557 -15.13186 -14.68067 -14.66111 -14.47028 -14.37468 -13.83023 -13.76502 -13.57285 -13.45982 -13.27262 -13.12919 -12.95826 -12.90337 -12.69894 -12.65076 -12.49813 -12.34667 -12.21152 -12.13888 -11.94896 -11.87890 -11.76266 -11.62255 -11.34064 -11.23299 -11.08052 -10.94961 -10.80861 -10.67935 -9.40859 -9.01117 -8.25456 -6.40485 1.31548 1.35589 1.42987 1.82968 2.29294 2.46548 2.94172 3.03527 3.74364 3.79823 3.89487 3.98153 4.13302 4.14582 4.21970 4.28181 4.32335 4.41570 4.50105 4.53035 4.59981 4.62948 4.65241 4.74378 4.80005 4.81837 4.88571 4.92632 4.96011 5.01429 5.02440 5.03711 5.10274 5.12433 5.15083 5.18873 5.20992 5.21690 5.30302 5.37069 5.37536 5.40456 5.53417 5.57454 5.61569 5.68721 5.86152 6.04097 6.06113 6.17094 6.67247 6.82667 7.25977 7.51319 8.81109 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.004812 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.590381 B = 5817.988937 C = 6249.922356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.085 4.085 4 H 0.045 0.955 5 C -0.143 4.143 6 C 0.075 3.925 7 H 0.027 0.973 8 C -0.103 4.103 9 C -0.122 4.122 10 C -0.103 4.103 11 C 0.035 3.965 12 N -0.489 5.489 13 C 0.039 3.961 14 C 0.467 3.533 15 O -0.585 6.585 16 N -0.604 5.604 17 C 0.099 3.901 18 C -0.159 4.159 19 C 0.265 3.735 20 C -0.539 4.539 21 H 0.050 0.950 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.280 1.280 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.099 0.901 48 H 0.060 0.940 49 H 0.035 0.965 50 H 0.096 0.904 51 H 0.017 0.983 52 H -0.009 1.009 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -20.435 -4.969 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.104 4.104 4 H 0.063 0.937 5 C -0.201 4.201 6 C -0.034 4.034 7 H 0.045 0.955 8 C -0.140 4.140 9 C -0.160 4.160 10 C -0.141 4.141 11 C -0.092 4.092 12 N -0.211 5.211 13 C -0.092 4.092 14 C 0.255 3.745 15 O -0.466 6.466 16 N -0.336 5.336 17 C -0.023 4.023 18 C -0.217 4.217 19 C 0.143 3.857 20 C -0.577 4.577 21 H 0.068 0.932 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.788 3.212 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.205 1.205 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.115 0.885 51 H 0.035 0.965 52 H 0.009 0.991 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.717 -20.513 -5.359 21.720 hybrid contribution 0.220 2.625 0.007 2.634 sum -4.497 -17.889 -5.351 19.206 Atomic orbital electron populations 1.21837 0.95812 1.01890 1.01450 1.21452 0.95269 0.94121 1.03052 1.21211 0.93560 0.98002 0.97615 0.93697 1.21853 1.01420 0.99315 0.97511 1.21827 0.95174 0.96226 0.90153 0.95487 1.21636 0.94749 1.01423 0.96216 1.21586 0.96484 0.99636 0.98278 1.21491 0.99509 0.99921 0.93193 1.22309 0.87855 0.99418 0.99662 1.62556 1.06998 1.50665 1.00864 1.22532 1.01652 0.88043 0.96988 1.22679 0.80728 0.90470 0.80632 1.90575 1.39143 1.73562 1.43358 1.48459 1.47658 1.13445 1.23991 1.21720 0.92428 0.98090 0.90049 1.22141 1.00784 1.00152 0.98672 1.18612 0.93821 0.78111 0.95145 1.21635 1.09204 0.92079 1.34813 0.93166 1.25840 0.97403 0.99869 0.95971 1.70047 1.28899 1.13718 1.44181 0.85526 0.79455 0.77573 0.78626 1.18321 1.20213 1.20531 0.92858 0.91717 0.93539 0.91239 0.90798 0.95496 0.90846 0.91646 0.89470 0.91570 0.95053 0.90017 0.91326 0.89796 0.95655 0.90692 0.86457 0.86032 0.91247 0.88277 0.92099 0.94536 0.88495 0.96528 0.99066 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.67 71.98 0.70 -1.95 16 2 C -0.10 -2.00 4.73 30.59 0.14 -1.85 16 3 C -0.09 -2.23 1.68 -10.79 -0.02 -2.25 16 4 H 0.04 1.37 6.27 -2.39 -0.01 1.35 16 5 C -0.14 -3.61 8.22 71.98 0.59 -3.02 16 6 C 0.07 2.24 1.28 44.94 0.06 2.30 16 7 H 0.03 1.13 5.71 -2.38 -0.01 1.12 16 8 C -0.10 -2.49 4.66 30.65 0.14 -2.34 16 9 C -0.12 -3.00 6.00 30.68 0.18 -2.82 16 10 C -0.10 -2.43 6.09 30.65 0.19 -2.24 16 11 C 0.04 1.05 5.00 86.33 0.43 1.48 16 12 N -0.49 -13.72 3.83 -875.64 -3.35 -17.07 16 13 C 0.04 1.14 3.78 85.56 0.32 1.46 16 14 C 0.47 19.35 7.07 87.66 0.62 19.97 16 15 O -0.58 -29.94 11.22 -3.04 -0.03 -29.98 16 16 N -0.60 -25.88 2.46 -826.14 -2.03 -27.91 16 17 C 0.10 3.07 5.86 86.38 0.51 3.57 16 18 C -0.16 -3.97 10.19 71.98 0.73 -3.24 16 19 C 0.26 14.66 5.16 85.63 0.44 15.10 16 20 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.01 0.48 5.46 84.65 0.46 0.94 16 23 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 24 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 28 H 0.05 0.91 6.71 -2.39 -0.02 0.90 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.24 6.70 -2.39 -0.02 1.23 16 32 H 0.07 1.48 7.30 -2.39 -0.02 1.46 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.55 6.79 -2.39 -0.02 1.53 16 35 H 0.06 1.48 6.88 -2.39 -0.02 1.46 16 36 H 0.09 1.79 6.53 -2.38 -0.02 1.77 16 37 H 0.07 1.55 6.61 -2.39 -0.02 1.53 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 1.00 5.65 -2.39 -0.01 0.99 16 43 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 44 H 0.12 3.07 5.40 -2.39 -0.01 3.05 16 45 H 0.12 2.85 6.89 -2.38 -0.02 2.84 16 46 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 47 H 0.10 2.36 6.59 -2.38 -0.02 2.34 16 48 H 0.06 1.40 7.13 -2.39 -0.02 1.38 16 49 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 52 H -0.01 -0.57 7.42 -2.39 -0.02 -0.58 16 53 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.42 388.13 3.50 -69.92 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.86 Total: 20.65 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 5.74 Total: -6.38 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -5.09 Total: -102.10 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.03 Total: -29.98 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.42 3.50 -69.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.268 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds