Wall clock time and date at job start Tue Mar 31 2020 10:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46792 * 2 1 4 4 H 1.09000 * 109.47760 * 55.00302 * 3 2 1 5 5 C 1.53002 * 109.47683 * 295.00247 * 3 2 1 6 6 C 1.53006 * 109.47153 * 175.00318 * 3 2 1 7 7 H 1.08999 * 109.44775 * 297.67102 * 6 3 2 8 8 C 1.53034 * 109.46005 * 57.64318 * 6 3 2 9 9 C 1.53122 * 109.27769 * 179.20190 * 8 6 3 10 10 C 1.53126 * 109.15609 * 302.34215 * 9 8 6 11 11 C 1.53035 * 109.27509 * 57.65965 * 10 9 8 12 12 N 1.46840 * 109.46620 * 177.69824 * 6 3 2 13 13 C 1.46905 * 110.99819 * 54.14310 * 12 6 3 14 14 C 1.50706 * 109.46921 * 199.32666 * 13 12 6 15 15 O 1.21277 * 119.99873 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00109 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.46848 * 269.99758 * 17 16 14 19 19 C 1.46499 * 119.99988 * 179.97438 * 16 14 13 20 20 C 1.50697 * 109.47491 * 270.00153 * 19 16 14 21 21 H 1.08003 * 120.00050 * 359.97438 * 20 19 16 22 22 C 1.37879 * 120.00223 * 179.97438 * 20 19 16 23 23 N 1.31512 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00164 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47221 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47025 * 120.00172 * 24 22 20 27 27 H 1.48506 * 109.47051 * 239.99874 * 24 22 20 28 28 H 1.09004 * 109.47717 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47017 * 299.99799 * 1 2 3 31 31 H 1.08993 * 109.46753 * 240.00331 * 2 1 3 32 32 H 1.09000 * 109.47006 * 120.00317 * 2 1 3 33 33 H 1.08995 * 109.47400 * 180.02562 * 5 3 2 34 34 H 1.09012 * 109.46847 * 300.00482 * 5 3 2 35 35 H 1.09003 * 109.46932 * 59.99618 * 5 3 2 36 36 H 1.08995 * 109.50361 * 59.25695 * 8 6 3 37 37 H 1.09004 * 109.53789 * 299.16130 * 8 6 3 38 38 H 1.08999 * 109.52298 * 182.44524 * 9 8 6 39 39 H 1.08999 * 109.57565 * 62.27822 * 9 8 6 40 40 H 1.08993 * 109.50606 * 297.71772 * 10 9 8 41 41 H 1.09004 * 109.53225 * 177.61087 * 10 9 8 42 42 H 1.09004 * 109.46422 * 180.80469 * 11 10 9 43 43 H 1.09002 * 109.46707 * 60.83418 * 11 10 9 44 44 H 1.08992 * 109.47260 * 79.32651 * 13 12 6 45 45 H 1.08999 * 109.47095 * 319.32451 * 13 12 6 46 46 H 1.09001 * 109.47839 * 29.99672 * 17 16 14 47 47 H 1.08999 * 109.47698 * 150.00238 * 17 16 14 48 48 H 1.09005 * 109.47122 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.47583 * 300.00035 * 18 17 16 50 50 H 1.09000 * 109.47243 * 60.00455 * 18 17 16 51 51 H 1.09005 * 109.47214 * 149.99906 * 19 16 14 52 52 H 1.08999 * 109.47216 * 30.00322 * 19 16 14 53 53 H 0.97001 * 120.00120 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 1 3.8512 0.9942 1.0761 8 6 4.1722 0.6377 -1.0243 9 6 5.6986 0.6591 -0.9058 10 6 6.1833 2.1115 -0.9174 11 6 5.5176 2.8754 0.2295 12 7 4.0586 2.8262 0.0703 13 6 3.3908 3.6645 1.0749 14 6 3.5444 5.1161 0.7002 15 8 4.1509 5.4221 -0.3045 16 7 3.0087 6.0743 1.4821 17 6 2.2776 5.7047 2.6966 18 6 0.7976 5.5096 2.3613 19 6 3.1585 7.4854 1.1181 20 6 4.4165 8.0340 1.7407 21 1 5.0417 7.3955 2.3472 22 6 4.7693 9.3511 1.5360 23 7 4.0078 10.1287 0.7978 24 14 6.3290 10.0309 2.3070 25 1 7.0033 8.9611 3.0856 26 1 7.2393 10.5147 1.2383 27 1 5.9839 11.1576 3.2108 28 1 -0.3635 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9988 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1492 35 1 0.5488 2.1253 -1.3968 36 1 3.8747 1.0793 -1.9754 37 1 3.8176 -0.3918 -0.9745 38 1 6.1368 0.1222 -1.7472 39 1 5.9992 0.1822 0.0271 40 1 5.9175 2.5763 -1.8668 41 1 7.2657 2.1356 -0.7907 42 1 5.8496 3.9136 0.2154 43 1 5.7950 2.4185 1.1795 44 1 3.8432 3.4915 2.0513 45 1 2.3318 3.4097 1.1148 46 1 2.6847 4.7765 3.0976 47 1 2.3807 6.4969 3.4381 48 1 0.2536 5.2341 3.2648 49 1 0.3903 6.4377 1.9603 50 1 0.6944 4.7173 1.6199 51 1 2.2983 8.0477 1.4814 52 1 3.2203 7.5764 0.0337 53 1 4.2557 11.0554 0.6541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524811549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:05 Heat of formation + Delta-G solvation = -49.654350 kcal Electronic energy + Delta-G solvation = -28161.902967 eV Core-core repulsion = 24646.840440 eV Total energy + Delta-G solvation = -3515.062527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.07615 -38.46411 -35.85161 -35.10347 -33.49367 -32.68070 -30.94668 -30.03313 -28.54564 -28.15791 -26.30303 -25.03255 -23.55730 -22.95348 -22.66342 -21.70514 -20.28970 -18.81744 -18.16274 -16.55776 -16.31749 -15.90317 -15.50055 -15.30500 -14.97255 -14.69703 -14.32021 -13.96832 -13.88571 -13.70499 -13.38490 -13.27106 -12.88360 -12.77814 -12.67283 -12.26117 -12.21220 -11.95926 -11.92953 -11.87144 -11.69441 -11.38650 -11.19592 -11.10779 -10.97291 -10.85771 -10.82809 -10.69515 -10.60534 -10.52099 -10.41023 -10.12768 -10.05717 -9.92148 -9.56211 -8.78774 -8.40301 -7.96984 -7.55608 -6.00700 -4.05044 3.31157 3.38624 3.42076 3.57672 3.70479 4.26106 4.47989 4.61300 4.69211 4.89190 4.96284 5.02370 5.09505 5.14586 5.23889 5.28767 5.33614 5.38375 5.45812 5.51620 5.53957 5.56721 5.60309 5.65186 5.69760 5.71732 5.78150 5.83752 5.87332 5.90943 5.96977 5.98412 6.01694 6.06456 6.08336 6.12231 6.23966 6.26945 6.34305 6.38068 6.49791 6.51662 6.59865 7.06901 7.26777 7.35311 7.52488 7.64705 7.97022 8.28985 8.54563 8.96250 9.25504 9.60330 11.07249 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.003990 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.355077 B = 7016.377827 C = 8181.884026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.142 4.142 6 C 0.092 3.908 7 H 0.035 0.965 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.114 4.114 11 C 0.058 3.942 12 N -0.509 5.509 13 C 0.029 3.971 14 C 0.507 3.493 15 O -0.522 6.522 16 N -0.602 5.602 17 C 0.107 3.893 18 C -0.169 4.169 19 C 0.248 3.752 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.060 3.940 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.030 0.970 52 H 0.043 0.957 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -21.356 0.871 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.088 0.912 5 C -0.199 4.199 6 C -0.017 4.017 7 H 0.053 0.947 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.151 4.151 11 C -0.069 4.069 12 N -0.233 5.233 13 C -0.102 4.102 14 C 0.293 3.707 15 O -0.397 6.397 16 N -0.335 5.335 17 C -0.017 4.017 18 C -0.227 4.227 19 C 0.129 3.871 20 C -0.562 4.562 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.724 3.276 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.048 0.952 52 H 0.061 0.939 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.902 -20.793 -0.208 21.364 hybrid contribution 1.005 0.215 1.440 1.770 sum -3.897 -20.577 1.233 20.979 Atomic orbital electron populations 1.21816 0.95918 1.01233 1.02068 1.21601 0.95825 0.96365 1.01813 1.21307 0.94102 0.95963 0.99448 0.91236 1.21818 0.99820 1.02146 0.96134 1.21634 0.94203 0.88620 0.97226 0.94739 1.21700 0.94931 0.98933 0.99370 1.21601 0.95989 0.97078 1.01180 1.21539 0.98954 0.94707 0.99944 1.22132 0.86777 1.01960 0.96055 1.61492 1.05003 1.08044 1.48766 1.22205 1.01028 0.93155 0.93812 1.20157 0.79939 0.86556 0.84074 1.90653 1.40449 1.82750 1.25861 1.48252 1.53117 1.08811 1.23346 1.21373 0.91116 1.00634 0.88584 1.22225 0.97105 1.02237 1.01145 1.19215 0.96502 0.73838 0.97538 1.21482 1.08046 0.95513 1.31162 0.92579 1.24930 0.97019 0.96880 0.95295 1.69943 1.37976 1.06766 1.38711 0.86474 0.83329 0.78781 0.79010 1.19886 1.20899 1.21022 0.92313 0.93106 0.92887 0.91660 0.92409 0.91007 0.92748 0.93468 0.90601 0.91709 0.92151 0.92720 0.90790 0.91938 0.89280 0.95891 0.92888 0.88139 0.92134 0.90104 0.92331 0.92004 0.93131 0.95233 0.93942 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -1.00 4.83 -26.73 -0.13 -1.13 16 3 C -0.09 -0.94 1.70 -90.62 -0.15 -1.09 16 4 H 0.07 0.75 6.07 -51.93 -0.32 0.44 16 5 C -0.14 -1.66 8.45 37.16 0.31 -1.35 16 6 C 0.09 1.06 1.69 -67.72 -0.11 0.95 16 7 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 8 C -0.11 -1.17 4.65 -26.65 -0.12 -1.30 16 9 C -0.12 -1.27 6.00 -26.60 -0.16 -1.43 16 10 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 11 C 0.06 0.88 5.11 -3.83 -0.02 0.87 16 12 N -0.51 -7.56 3.25 -228.12 -0.74 -8.30 16 13 C 0.03 0.45 3.56 -4.97 -0.02 0.43 16 14 C 0.51 10.61 7.38 -10.98 -0.08 10.53 16 15 O -0.52 -13.19 14.70 5.56 0.08 -13.11 16 16 N -0.60 -12.77 2.46 -175.06 -0.43 -13.20 16 17 C 0.11 1.74 5.93 -4.04 -0.02 1.71 16 18 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 19 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 20 C -0.52 -14.94 9.39 -34.44 -0.32 -15.26 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 24 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 6.69 -51.93 -0.35 0.19 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.07 7.27 -51.93 -0.38 0.70 16 34 H 0.05 0.61 6.47 -51.92 -0.34 0.28 16 35 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 36 H 0.08 0.88 6.45 -51.93 -0.33 0.54 16 37 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.67 6.65 -51.93 -0.35 1.32 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.78 7.27 -51.93 -0.38 0.40 16 45 H 0.10 1.37 4.36 -51.93 -0.23 1.15 16 46 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 47 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.05 0.65 7.22 -51.93 -0.37 0.28 16 51 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 52 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 53 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -32.08 393.67 -9.63 -41.71 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -9.81 Total: -0.70 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.38 Total: -3.28 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.43 Total: -47.59 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.08 -9.63 -41.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.944 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds