Wall clock time and date at job start Tue Mar 31 2020 10:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46792 * 2 1 4 4 H 1.09000 * 109.47760 * 55.00302 * 3 2 1 5 5 C 1.53002 * 109.47683 * 295.00247 * 3 2 1 6 6 C 1.53006 * 109.47153 * 175.00318 * 3 2 1 7 7 H 1.08999 * 109.44775 * 297.67102 * 6 3 2 8 8 C 1.53034 * 109.46005 * 57.64318 * 6 3 2 9 9 C 1.53122 * 109.27769 * 179.20190 * 8 6 3 10 10 C 1.53126 * 109.15609 * 302.34215 * 9 8 6 11 11 C 1.53035 * 109.27509 * 57.65965 * 10 9 8 12 12 N 1.46840 * 109.46620 * 177.69824 * 6 3 2 13 13 C 1.46905 * 110.99819 * 54.14310 * 12 6 3 14 14 C 1.50706 * 109.46921 * 199.32666 * 13 12 6 15 15 O 1.21277 * 119.99873 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99900 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00109 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.46848 * 269.99758 * 17 16 14 19 19 C 1.46499 * 119.99988 * 179.97438 * 16 14 13 20 20 C 1.50697 * 109.47491 * 270.00153 * 19 16 14 21 21 H 1.08003 * 120.00050 * 359.97438 * 20 19 16 22 22 C 1.37879 * 120.00223 * 179.97438 * 20 19 16 23 23 N 1.31512 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00164 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47221 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47025 * 120.00172 * 24 22 20 27 27 H 1.48506 * 109.47051 * 239.99874 * 24 22 20 28 28 H 1.09004 * 109.47717 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47017 * 299.99799 * 1 2 3 31 31 H 1.08993 * 109.46753 * 240.00331 * 2 1 3 32 32 H 1.09000 * 109.47006 * 120.00317 * 2 1 3 33 33 H 1.08995 * 109.47400 * 180.02562 * 5 3 2 34 34 H 1.09012 * 109.46847 * 300.00482 * 5 3 2 35 35 H 1.09003 * 109.46932 * 59.99618 * 5 3 2 36 36 H 1.08995 * 109.50361 * 59.25695 * 8 6 3 37 37 H 1.09004 * 109.53789 * 299.16130 * 8 6 3 38 38 H 1.08999 * 109.52298 * 182.44524 * 9 8 6 39 39 H 1.08999 * 109.57565 * 62.27822 * 9 8 6 40 40 H 1.08993 * 109.50606 * 297.71772 * 10 9 8 41 41 H 1.09004 * 109.53225 * 177.61087 * 10 9 8 42 42 H 1.09004 * 109.46422 * 180.80469 * 11 10 9 43 43 H 1.09002 * 109.46707 * 60.83418 * 11 10 9 44 44 H 1.08992 * 109.47260 * 79.32651 * 13 12 6 45 45 H 1.08999 * 109.47095 * 319.32451 * 13 12 6 46 46 H 1.09001 * 109.47839 * 29.99672 * 17 16 14 47 47 H 1.08999 * 109.47698 * 150.00238 * 17 16 14 48 48 H 1.09005 * 109.47122 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.47583 * 300.00035 * 18 17 16 50 50 H 1.09000 * 109.47243 * 60.00455 * 18 17 16 51 51 H 1.09005 * 109.47214 * 149.99906 * 19 16 14 52 52 H 1.08999 * 109.47216 * 30.00322 * 19 16 14 53 53 H 0.97001 * 120.00120 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1256 7 1 3.8512 0.9942 1.0761 8 6 4.1722 0.6377 -1.0243 9 6 5.6986 0.6591 -0.9058 10 6 6.1833 2.1115 -0.9174 11 6 5.5176 2.8754 0.2295 12 7 4.0586 2.8262 0.0703 13 6 3.3908 3.6645 1.0749 14 6 3.5444 5.1161 0.7002 15 8 4.1509 5.4221 -0.3045 16 7 3.0087 6.0743 1.4821 17 6 2.2776 5.7047 2.6966 18 6 0.7976 5.5096 2.3613 19 6 3.1585 7.4854 1.1181 20 6 4.4165 8.0340 1.7407 21 1 5.0417 7.3955 2.3472 22 6 4.7693 9.3511 1.5360 23 7 4.0078 10.1287 0.7978 24 14 6.3290 10.0309 2.3070 25 1 7.0033 8.9611 3.0856 26 1 7.2393 10.5147 1.2383 27 1 5.9839 11.1576 3.2108 28 1 -0.3635 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9988 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1492 35 1 0.5488 2.1253 -1.3968 36 1 3.8747 1.0793 -1.9754 37 1 3.8176 -0.3918 -0.9745 38 1 6.1368 0.1222 -1.7472 39 1 5.9992 0.1822 0.0271 40 1 5.9175 2.5763 -1.8668 41 1 7.2657 2.1356 -0.7907 42 1 5.8496 3.9136 0.2154 43 1 5.7950 2.4185 1.1795 44 1 3.8432 3.4915 2.0513 45 1 2.3318 3.4097 1.1148 46 1 2.6847 4.7765 3.0976 47 1 2.3807 6.4969 3.4381 48 1 0.2536 5.2341 3.2648 49 1 0.3903 6.4377 1.9603 50 1 0.6944 4.7173 1.6199 51 1 2.2983 8.0477 1.4814 52 1 3.2203 7.5764 0.0337 53 1 4.2557 11.0554 0.6541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524811549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:03 Heat of formation + Delta-G solvation = -68.274475 kcal Electronic energy + Delta-G solvation = -28162.710396 eV Core-core repulsion = 24646.840440 eV Total energy + Delta-G solvation = -3515.869956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.28987 -39.91533 -36.97893 -36.55059 -35.00913 -34.41942 -31.78294 -31.59799 -29.84839 -29.36158 -27.95000 -25.97106 -25.02079 -24.35389 -23.89094 -22.87215 -21.22648 -19.92984 -19.57413 -18.61806 -17.92289 -17.32839 -16.70500 -16.66424 -16.16957 -15.91206 -15.73854 -15.15988 -15.10660 -14.77054 -14.61576 -14.35026 -14.32763 -14.01702 -13.86932 -13.64083 -13.40951 -13.23083 -13.15735 -13.05172 -12.78016 -12.73527 -12.68172 -12.62728 -12.48052 -12.15888 -12.05494 -11.89067 -11.81798 -11.76915 -11.68090 -11.37368 -11.33539 -11.02580 -10.83249 -10.65436 -10.45379 -9.37759 -9.12590 -8.22394 -6.37405 1.34115 1.36758 1.48402 1.93646 2.25165 2.40887 3.00117 3.06619 3.72859 3.73928 3.88495 3.96370 4.04685 4.13198 4.19717 4.27994 4.28220 4.33817 4.38740 4.43739 4.52968 4.58207 4.64762 4.73551 4.76384 4.79665 4.83502 4.90784 4.94778 4.98797 4.99578 5.04267 5.06116 5.10606 5.17121 5.22949 5.23667 5.26653 5.30290 5.35213 5.38647 5.39962 5.51733 5.59115 5.60231 5.65496 5.88894 6.06776 6.09466 6.30476 6.71590 6.88481 7.29440 7.60707 8.84601 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.003990 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.355077 B = 7016.377827 C = 8181.884026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.086 4.086 4 H 0.070 0.930 5 C -0.137 4.137 6 C 0.091 3.909 7 H 0.048 0.952 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.111 4.111 11 C 0.060 3.940 12 N -0.528 5.528 13 C 0.046 3.954 14 C 0.498 3.502 15 O -0.578 6.578 16 N -0.608 5.608 17 C 0.100 3.900 18 C -0.160 4.160 19 C 0.266 3.734 20 C -0.540 4.540 21 H 0.051 0.949 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.125 0.875 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.058 0.942 51 H 0.019 0.981 52 H -0.007 1.007 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -24.507 2.851 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.194 4.194 6 C -0.016 4.016 7 H 0.066 0.934 8 C -0.147 4.147 9 C -0.152 4.152 10 C -0.149 4.149 11 C -0.067 4.067 12 N -0.253 5.253 13 C -0.084 4.084 14 C 0.286 3.714 15 O -0.457 6.457 16 N -0.341 5.341 17 C -0.022 4.022 18 C -0.218 4.218 19 C 0.144 3.856 20 C -0.578 4.578 21 H 0.069 0.931 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.142 0.858 46 H 0.113 0.887 47 H 0.089 0.911 48 H 0.115 0.885 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.037 0.963 52 H 0.011 0.989 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.130 -23.980 1.809 24.589 hybrid contribution 1.028 1.209 0.773 1.765 sum -4.102 -22.771 2.581 23.281 Atomic orbital electron populations 1.21816 0.95500 1.01934 1.01810 1.21551 0.96119 0.94561 1.02687 1.21298 0.93292 0.97479 0.98349 0.91202 1.21744 1.00343 0.99926 0.97367 1.21774 0.94933 0.86544 0.98339 0.93375 1.21719 0.94904 1.00007 0.98097 1.21571 0.96003 0.95006 1.02580 1.21514 0.99410 0.96256 0.97742 1.22026 0.87398 0.99589 0.97727 1.61418 1.04768 1.10134 1.48936 1.22058 1.02736 0.89096 0.94529 1.21214 0.78427 0.88737 0.83022 1.90619 1.42786 1.83964 1.28342 1.48290 1.53762 1.06868 1.25144 1.21705 0.92524 1.01728 0.86247 1.22147 0.95143 1.01436 1.03048 1.18625 0.95523 0.77174 0.94251 1.21729 1.08779 0.95966 1.31354 0.93096 1.25862 1.00481 0.97189 0.95655 1.70064 1.39828 1.07239 1.39736 0.85374 0.78832 0.78399 0.78228 1.19177 1.20790 1.19287 0.92934 0.91959 0.92828 0.91096 0.91162 0.94913 0.92541 0.92467 0.92142 0.89005 0.90621 0.91304 0.93235 0.91062 0.94002 0.94382 0.91059 0.85767 0.88710 0.91071 0.88519 0.94306 0.92310 0.96282 0.98912 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.47 4.83 30.59 0.15 -1.33 16 3 C -0.09 -1.58 1.70 -10.79 -0.02 -1.59 16 4 H 0.07 1.29 6.07 -2.39 -0.01 1.27 16 5 C -0.14 -3.10 8.45 71.98 0.61 -2.49 16 6 C 0.09 1.90 1.69 44.94 0.08 1.98 16 7 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 8 C -0.11 -2.03 4.65 30.65 0.14 -1.88 16 9 C -0.11 -2.12 6.00 30.68 0.18 -1.94 16 10 C -0.11 -2.85 6.09 30.65 0.19 -2.66 16 11 C 0.06 1.85 5.11 86.32 0.44 2.29 16 12 N -0.53 -15.50 3.25 -875.64 -2.84 -18.34 16 13 C 0.05 1.41 3.56 85.56 0.30 1.71 16 14 C 0.50 21.67 7.38 87.66 0.65 22.32 16 15 O -0.58 -31.40 14.70 -3.02 -0.04 -31.45 16 16 N -0.61 -26.73 2.46 -826.16 -2.03 -28.76 16 17 C 0.10 3.16 5.93 86.38 0.51 3.67 16 18 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 19 C 0.27 14.88 5.16 85.63 0.44 15.33 16 20 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 21 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 22 C 0.01 0.41 5.46 84.66 0.46 0.87 16 23 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 24 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.05 0.72 6.57 -2.38 -0.02 0.71 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.88 6.69 -2.39 -0.02 0.87 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.03 0.99 7.27 -2.39 -0.02 0.98 16 34 H 0.06 1.23 6.47 -2.38 -0.02 1.22 16 35 H 0.06 1.15 6.56 -2.39 -0.02 1.14 16 36 H 0.06 1.32 6.45 -2.39 -0.02 1.31 16 37 H 0.09 1.24 6.55 -2.39 -0.02 1.22 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.66 6.65 -2.38 -0.02 1.65 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.92 7.27 -2.39 -0.02 1.90 16 45 H 0.12 3.15 4.36 -2.39 -0.01 3.14 16 46 H 0.09 2.34 6.44 -2.39 -0.02 2.32 16 47 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 48 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 1.39 7.22 -2.39 -0.02 1.38 16 51 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 52 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 53 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -75.54 393.67 4.06 -71.48 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.86 Total: 16.41 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.81 Total: -0.07 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.59 Total: -104.40 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.04 Total: -31.45 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -75.54 4.06 -71.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524811549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.209 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds