Wall clock time and date at job start Tue Mar 31 2020 10:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 H 1.09004 * 109.46960 * 54.77854 * 3 2 1 5 5 C 1.50700 * 109.47425 * 174.78104 * 3 2 1 6 6 H 1.07991 * 120.00002 * 120.00078 * 5 3 2 7 7 C 1.37878 * 119.99677 * 300.00122 * 5 3 2 8 8 N 1.31519 * 119.99911 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00188 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46980 * 90.00058 * 9 7 5 11 11 H 1.48499 * 109.47151 * 210.00187 * 9 7 5 12 12 H 1.48498 * 109.47250 * 330.00159 * 9 7 5 13 13 N 1.46899 * 109.47353 * 294.78174 * 3 2 1 14 14 C 1.46893 * 111.00541 * 154.13960 * 13 3 2 15 15 C 1.50697 * 109.47362 * 185.23264 * 14 13 3 16 16 O 1.21277 * 120.00145 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99821 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99881 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47476 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47609 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47023 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47279 * 294.99810 * 21 20 19 23 23 C 1.53004 * 109.47124 * 180.02562 * 22 21 20 24 24 C 1.52994 * 109.47124 * 60.00230 * 23 22 21 25 25 C 1.53008 * 109.47180 * 299.99820 * 24 23 22 26 26 C 1.52996 * 109.46783 * 60.00237 * 25 24 23 27 27 H 1.08997 * 109.47075 * 175.45968 * 1 2 3 28 28 H 1.09004 * 109.47222 * 295.45781 * 1 2 3 29 29 H 1.08996 * 109.47434 * 55.45456 * 1 2 3 30 30 H 1.08999 * 109.47291 * 240.00116 * 2 1 3 31 31 H 1.08998 * 109.47477 * 120.00044 * 2 1 3 32 32 H 0.96998 * 120.00011 * 179.97438 * 8 7 5 33 33 H 1.00901 * 110.99736 * 278.09861 * 13 3 2 34 34 H 1.09005 * 109.47440 * 305.23677 * 14 13 3 35 35 H 1.09003 * 109.46810 * 65.23100 * 14 13 3 36 36 H 0.96997 * 120.00091 * 359.97438 * 17 15 14 37 37 H 1.08999 * 109.47437 * 299.99799 * 18 17 15 38 38 H 1.09003 * 109.47345 * 59.99493 * 18 17 15 39 39 H 1.09005 * 109.47491 * 300.00375 * 19 18 17 40 40 H 1.09003 * 109.46705 * 59.99765 * 19 18 17 41 41 H 1.08998 * 109.46695 * 300.00409 * 20 19 18 42 42 H 1.09003 * 109.47070 * 60.00244 * 20 19 18 43 43 H 1.08997 * 109.47248 * 55.00279 * 21 20 19 44 44 H 1.08997 * 109.47363 * 300.00398 * 22 21 20 45 45 H 1.09002 * 109.46707 * 60.00387 * 22 21 20 46 46 H 1.08997 * 109.47032 * 300.00241 * 23 22 21 47 47 H 1.09001 * 109.46671 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.47074 * 180.02562 * 24 23 22 49 49 H 1.08997 * 109.47157 * 60.00087 * 24 23 22 50 50 H 1.08997 * 109.46899 * 300.00550 * 25 24 23 51 51 H 1.09002 * 109.46954 * 180.02562 * 25 24 23 52 52 H 1.09000 * 109.47079 * 180.02562 * 26 25 24 53 53 H 1.08997 * 109.47249 * 59.99919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 0.8396 5 6 3.5415 1.4445 0.1292 6 1 4.1495 1.8881 -0.6452 7 6 4.1388 0.8800 1.2363 8 7 5.4491 0.8822 1.3494 9 14 3.0870 0.1133 2.5762 10 1 2.8662 -1.3231 2.2711 11 1 3.7800 0.2409 3.8833 12 1 1.7785 0.8127 2.6394 13 7 1.6559 2.0977 -1.2574 14 6 1.5567 3.5530 -1.0839 15 6 1.0382 4.1761 -2.3543 16 8 0.7775 3.4769 -3.3102 17 7 0.8651 5.5108 -2.4283 18 6 0.3606 6.1165 -3.6630 19 6 0.2573 7.6323 -3.4824 20 6 -0.2691 8.2651 -4.7722 21 6 -0.3717 9.7808 -4.5916 22 6 -1.4237 10.0976 -3.5267 23 6 -1.5268 11.6135 -3.3466 24 6 -1.9337 12.2581 -4.6731 25 6 -0.8817 11.9414 -5.7380 26 6 -0.7787 10.4256 -5.9181 27 1 -0.3633 -1.0244 -0.0813 28 1 -0.3634 0.4417 0.9279 29 1 -0.3634 0.5827 -0.8464 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8693 0.4854 2.1283 33 1 2.3005 1.8649 -1.9980 34 1 0.8729 3.7755 -0.2646 35 1 2.5419 3.9596 -0.8555 36 1 1.0740 6.0701 -1.6638 37 1 1.0437 5.8937 -4.4827 38 1 -0.6249 5.7101 -3.8909 39 1 -0.4261 7.8549 -2.6628 40 1 1.2426 8.0389 -3.2544 41 1 0.4146 8.0425 -5.5913 42 1 -1.2543 7.8585 -5.0006 43 1 0.5943 10.1755 -4.2767 44 1 -2.3897 9.7029 -3.8416 45 1 -1.1340 9.6379 -2.5818 46 1 -0.5609 12.0084 -3.0319 47 1 -2.2760 11.8390 -2.5877 48 1 -2.0067 13.3381 -4.5449 49 1 -2.8997 11.8632 -4.9878 50 1 0.0842 12.3364 -5.4232 51 1 -1.1714 12.4011 -6.6829 52 1 -0.0289 10.1999 -6.6764 53 1 -1.7446 10.0306 -6.2328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581080507.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:39 Heat of formation + Delta-G solvation = -101.193352 kcal Electronic energy + Delta-G solvation = -25477.019168 eV Core-core repulsion = 21959.721742 eV Total energy + Delta-G solvation = -3517.297426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69187 -39.71693 -38.04903 -36.64121 -34.45500 -34.33210 -33.35828 -31.62384 -30.99371 -29.35874 -27.39433 -25.71548 -24.14410 -23.67473 -22.72725 -21.84359 -21.68904 -21.03462 -20.55894 -19.14844 -17.84475 -17.25452 -17.07530 -16.74613 -16.25109 -16.04230 -15.61222 -15.24843 -15.03563 -15.02349 -14.87300 -14.76390 -14.39245 -14.03567 -13.89994 -13.75763 -13.42689 -13.35896 -13.16238 -13.07098 -12.85298 -12.75366 -12.43115 -12.38872 -12.24434 -12.14426 -11.94388 -11.84754 -11.62204 -11.55157 -11.32019 -11.26920 -11.19856 -10.96172 -10.80001 -10.73598 -10.59411 -10.04679 -9.10488 -8.32547 -6.38497 1.33576 1.36850 1.48232 1.70759 2.19578 2.31139 3.02960 3.60651 3.71436 3.82394 3.87647 3.97436 4.09061 4.14276 4.27937 4.33487 4.35871 4.46771 4.50663 4.52348 4.60971 4.63912 4.66063 4.66990 4.70017 4.71253 4.75520 4.83872 4.88293 4.93454 5.00198 5.11311 5.14224 5.17946 5.22350 5.28251 5.30538 5.31315 5.39240 5.39940 5.44026 5.46182 5.48040 5.53723 5.56461 5.63926 5.67446 6.03942 6.36788 6.48420 6.67688 6.74224 7.30225 7.34116 8.83424 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.001935 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.810450 B =14464.042683 C =14699.461067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.191 3.809 4 H 0.038 0.962 5 C -0.548 4.548 6 H 0.033 0.967 7 C 0.016 3.984 8 N -0.945 5.945 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.300 1.300 12 H -0.241 1.241 13 N -0.662 5.662 14 C 0.046 3.954 15 C 0.516 3.484 16 O -0.571 6.571 17 N -0.722 5.722 18 C 0.121 3.879 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.082 4.082 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.333 0.667 34 H 0.112 0.888 35 H 0.057 0.943 36 H 0.414 0.586 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.063 0.937 52 H 0.061 0.939 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 23.038 -9.267 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.081 3.919 4 H 0.056 0.944 5 C -0.586 4.586 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.227 1.227 12 H -0.164 1.164 13 N -0.292 5.292 14 C -0.086 4.086 15 C 0.303 3.697 16 O -0.450 6.450 17 N -0.375 5.375 18 C -0.003 4.003 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.100 4.100 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.153 4.153 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.080 0.920 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.030 22.408 -9.771 29.792 hybrid contribution 1.483 -0.135 0.906 1.743 sum -15.546 22.273 -8.865 28.572 Atomic orbital electron populations 1.21654 0.94653 1.01246 1.01779 1.21760 0.96460 0.97736 0.99612 1.19499 0.91404 0.92204 0.88797 0.94378 1.22028 0.92674 1.38193 1.05751 0.94896 1.25877 0.95867 0.95907 1.00602 1.70066 1.11033 1.46708 1.30693 0.85804 0.79685 0.79520 0.77150 1.19639 1.22745 1.16418 1.60477 1.54888 1.06066 1.07733 1.21762 1.01151 0.90350 0.95373 1.20884 0.76831 0.82556 0.89471 1.90646 1.51759 1.62716 1.39840 1.45906 1.67415 1.06588 1.17641 1.21377 0.98614 0.94131 0.86169 1.21776 1.02815 0.91458 0.99682 1.21520 1.01480 0.94967 0.96775 1.21114 0.99162 0.94189 0.95558 1.21648 0.98883 0.95951 0.98877 1.21544 1.01487 0.95510 0.97304 1.21546 0.98735 1.00321 0.95195 1.21534 0.99320 0.95918 0.98963 1.21586 1.01462 0.95365 0.96869 0.92561 0.93307 0.91818 0.93227 0.94499 0.92544 0.85032 0.87000 0.92470 0.74916 0.93126 0.92619 0.89979 0.90642 0.91853 0.91730 0.91268 0.92278 0.91497 0.92153 0.91907 0.91861 0.92234 0.92164 0.91820 0.92039 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.85 71.98 0.71 -4.06 16 2 C -0.12 -5.03 5.11 30.59 0.16 -4.87 16 3 C 0.19 8.67 1.56 44.17 0.07 8.74 16 4 H 0.04 1.71 6.76 -2.38 -0.02 1.70 16 5 C -0.55 -30.32 9.05 25.60 0.23 -30.09 16 6 H 0.03 2.03 7.97 -2.92 -0.02 2.01 16 7 C 0.02 0.90 5.45 84.65 0.46 1.36 16 8 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 9 Si 0.95 44.12 24.41 68.60 1.67 45.79 16 10 H -0.27 -12.16 6.83 99.48 0.68 -11.48 16 11 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.24 -10.15 6.53 99.48 0.65 -9.51 16 13 N -0.66 -27.49 5.17 -499.47 -2.58 -30.07 16 14 C 0.05 1.59 5.99 85.56 0.51 2.10 16 15 C 0.52 16.79 7.88 87.66 0.69 17.49 16 16 O -0.57 -23.34 16.32 -3.02 -0.05 -23.39 16 17 N -0.72 -16.58 5.56 -463.07 -2.57 -19.15 16 18 C 0.12 2.45 5.67 86.38 0.49 2.94 16 19 C -0.12 -1.56 5.08 30.59 0.16 -1.41 16 20 C -0.11 -1.34 4.68 30.59 0.14 -1.19 16 21 C -0.08 -0.90 2.19 -10.79 -0.02 -0.92 16 22 C -0.12 -1.24 4.96 30.60 0.15 -1.09 16 23 C -0.12 -1.24 5.92 30.59 0.18 -1.05 16 24 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 25 C -0.12 -1.21 5.92 30.60 0.18 -1.03 16 26 C -0.12 -1.25 5.20 30.60 0.16 -1.09 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.06 2.27 7.64 -2.39 -0.02 2.25 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.63 3.22 -2.39 -0.01 1.63 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.33 15.07 8.29 -89.69 -0.74 14.33 16 34 H 0.11 3.33 7.92 -2.38 -0.02 3.31 16 35 H 0.06 2.04 8.11 -2.39 -0.02 2.02 16 36 H 0.41 6.96 8.47 -92.71 -0.79 6.17 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 0.93 6.57 -2.38 -0.02 0.92 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.69 6.57 -2.39 -0.02 0.68 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -68.35 402.72 0.47 -67.88 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.75 Total: 32.04 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.45 Total: -15.17 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -4.86 Total: -107.15 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.79 kcal Total: -68.35 0.47 -67.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581080507.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.313 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds