Wall clock time and date at job start Tue Mar 31 2020 11:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.45410 * 2 1 4 4 C 1.53033 * 109.46123 * 119.96946 * 2 1 3 5 5 C 1.53122 * 109.27556 * 179.19458 * 4 2 1 6 6 C 1.53113 * 109.16317 * 302.34542 * 5 4 2 7 7 C 1.53043 * 109.27814 * 57.65663 * 6 5 4 8 8 N 1.46847 * 109.52199 * 300.82136 * 7 6 5 9 9 C 1.46901 * 110.99936 * 185.83857 * 8 7 6 10 10 C 1.52995 * 109.47277 * 66.27947 * 9 8 7 11 11 C 1.52995 * 109.47034 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.46909 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00151 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99447 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00330 * 179.97438 * 13 12 11 16 16 C 1.52995 * 109.47088 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46826 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.46984 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47246 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00213 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00139 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99826 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46963 * 90.00310 * 23 21 19 25 25 H 1.48502 * 109.46992 * 209.99990 * 23 21 19 26 26 H 1.48496 * 109.47165 * 330.00494 * 23 21 19 27 27 H 1.09000 * 109.47020 * 172.46867 * 1 2 3 28 28 H 1.09001 * 109.47244 * 292.47627 * 1 2 3 29 29 H 1.09006 * 109.46905 * 52.47095 * 1 2 3 30 30 H 1.09002 * 109.50088 * 59.25978 * 4 2 1 31 31 H 1.09000 * 109.53911 * 299.15694 * 4 2 1 32 32 H 1.09005 * 109.51773 * 182.44088 * 5 4 2 33 33 H 1.08994 * 109.52445 * 62.25346 * 5 4 2 34 34 H 1.09009 * 109.50560 * 297.71874 * 6 5 4 35 35 H 1.08995 * 109.53902 * 177.61536 * 6 5 4 36 36 H 1.09002 * 109.46228 * 180.80504 * 7 6 5 37 37 H 1.09000 * 109.45254 * 60.83042 * 7 6 5 38 38 H 1.09003 * 109.47060 * 306.27867 * 9 8 7 39 39 H 1.09006 * 109.46625 * 186.28209 * 9 8 7 40 40 H 1.09003 * 109.47140 * 59.99969 * 10 9 8 41 41 H 1.08996 * 109.47138 * 300.00120 * 10 9 8 42 42 H 1.08994 * 109.47094 * 60.00289 * 11 10 9 43 43 H 1.08996 * 109.47182 * 299.99569 * 11 10 9 44 44 H 0.97002 * 120.00234 * 0.02562 * 12 11 10 45 45 H 1.09003 * 109.46977 * 60.00244 * 15 13 12 46 46 H 1.08996 * 109.47247 * 300.00427 * 15 13 12 47 47 H 1.08996 * 109.47341 * 300.00267 * 16 15 13 48 48 H 1.09003 * 109.47097 * 60.00214 * 16 15 13 49 49 H 1.09006 * 109.47443 * 299.99660 * 17 16 15 50 50 H 1.08994 * 109.47216 * 60.00157 * 17 16 15 51 51 H 1.08996 * 109.47222 * 299.99918 * 18 17 16 52 52 H 1.09003 * 109.47058 * 59.99768 * 18 17 16 53 53 H 0.96995 * 119.99913 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2356 6 6 4.0548 -1.4187 -0.0466 7 6 3.4865 -0.6777 -1.2591 8 7 2.0193 -0.6917 -1.1994 9 6 1.4373 -0.1106 -2.4166 10 6 1.7565 -1.0086 -3.6135 11 6 1.1498 -0.4036 -4.8810 12 7 1.4549 -1.2638 -6.0270 13 6 1.0179 -0.9280 -7.2570 14 8 0.3726 0.0866 -7.4151 15 6 1.3322 -1.8125 -8.4359 16 6 0.7254 -1.2076 -9.7034 17 6 1.0441 -2.1061 -10.9002 18 6 0.4378 -1.5008 -12.1680 19 6 0.7521 -2.3854 -13.3469 20 1 1.3264 -3.2890 -13.2059 21 6 0.3065 -2.0410 -14.6053 22 7 0.5803 -2.8132 -15.6341 23 14 -0.6876 -0.4783 -14.8489 24 1 0.2308 0.6529 -15.1358 25 1 -1.6219 -0.6586 -15.9890 26 1 -1.4617 -0.1868 -13.6157 27 1 -0.3633 -1.0188 -0.1347 28 1 -0.3634 0.3929 0.9496 29 1 -0.3633 0.6261 -0.8150 30 1 1.6659 -1.7446 1.2576 31 1 1.6894 -0.1987 2.1403 32 1 3.9379 -1.2862 2.1021 33 1 3.9457 0.2871 1.2671 34 1 3.7124 -2.4536 -0.0594 35 1 5.1439 -1.3952 -0.0835 36 1 3.8175 -1.1699 -2.1736 37 1 3.8404 0.3533 -1.2530 38 1 1.8589 0.8807 -2.5834 39 1 0.3564 -0.0308 -2.3001 40 1 1.3348 -1.9998 -3.4466 41 1 2.8373 -1.0883 -3.7298 42 1 1.5710 0.5877 -5.0481 43 1 0.0690 -0.3243 -4.7644 44 1 1.9707 -2.0755 -5.9004 45 1 0.9114 -2.8040 -8.2686 46 1 2.4130 -1.8916 -8.5529 47 1 -0.3553 -1.1282 -9.5867 48 1 1.1467 -0.2163 -9.8705 49 1 2.1249 -2.1858 -11.0172 50 1 0.6226 -3.0972 -10.7329 51 1 -0.6430 -1.4207 -12.0514 52 1 0.8597 -0.5098 -12.3351 53 1 0.2665 -2.5711 -16.5194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588256396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:52 Heat of formation + Delta-G solvation = -99.022233 kcal Electronic energy + Delta-G solvation = -24917.470732 eV Core-core repulsion = 21400.267453 eV Total energy + Delta-G solvation = -3517.203279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80575 -40.29446 -37.02540 -36.48387 -34.83665 -34.58846 -33.54816 -32.22811 -31.25979 -28.21076 -27.75742 -26.32716 -24.54707 -23.47386 -22.36523 -22.10411 -21.71421 -21.03266 -20.57051 -18.85005 -17.82572 -17.32713 -17.11415 -16.65458 -16.41649 -16.21140 -16.08389 -15.46888 -15.28890 -15.09418 -14.94477 -14.71259 -14.59390 -14.06244 -13.90968 -13.69502 -13.52406 -13.44044 -13.03810 -12.92546 -12.83005 -12.74886 -12.66527 -12.46331 -12.32516 -12.06389 -11.95864 -11.83304 -11.75255 -11.56926 -11.50963 -11.33976 -11.25946 -11.15833 -11.05928 -10.77757 -10.75645 -10.08521 -9.27844 -8.29484 -6.32526 1.34796 1.36337 1.49290 1.67417 2.19709 2.36139 2.89760 3.05979 3.81509 3.82190 3.87405 3.90592 4.03614 4.05284 4.10454 4.17205 4.17576 4.27831 4.43369 4.45110 4.48726 4.56981 4.62416 4.66088 4.67485 4.68650 4.76624 4.79424 4.87152 4.87615 4.91507 4.97266 5.06267 5.08064 5.15515 5.18180 5.20124 5.22103 5.24802 5.26662 5.29806 5.33728 5.48427 5.50679 5.61599 5.66509 5.69186 6.15175 6.19531 6.29911 6.58466 6.75444 7.29832 7.32434 8.87098 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.040054 B = 0.001563 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.894814 B =17907.865975 C =18350.082666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.032 0.968 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.115 4.115 7 C 0.049 3.951 8 N -0.537 5.537 9 C 0.054 3.946 10 C -0.111 4.111 11 C 0.122 3.878 12 N -0.719 5.719 13 C 0.510 3.490 14 O -0.589 6.589 15 C -0.131 4.131 16 C -0.098 4.098 17 C -0.094 4.094 18 C -0.017 4.017 19 C -0.532 4.532 20 H 0.037 0.963 21 C 0.005 3.995 22 N -0.950 5.950 23 Si 0.947 3.053 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.253 1.253 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.030 0.970 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.418 0.582 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.013 0.987 52 H 0.012 0.988 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 4.134 40.478 41.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 H 0.050 0.950 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.078 4.078 8 N -0.262 5.262 9 C -0.075 4.075 10 C -0.149 4.149 11 C -0.003 4.003 12 N -0.372 5.372 13 C 0.298 3.702 14 O -0.470 6.470 15 C -0.171 4.171 16 C -0.136 4.136 17 C -0.132 4.132 18 C -0.055 4.055 19 C -0.570 4.570 20 H 0.056 0.944 21 C -0.192 4.192 22 N -0.591 5.591 23 Si 0.771 3.229 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.177 1.177 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.255 0.745 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.032 0.968 52 H 0.031 0.969 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.168 4.349 40.255 40.817 hybrid contribution 0.070 1.073 -0.817 1.350 sum 5.239 5.422 39.437 40.152 Atomic orbital electron populations 1.21918 0.93865 1.02458 1.02232 1.21657 0.95755 0.95030 0.90503 0.95019 1.21621 0.95657 1.01173 0.96260 1.21598 0.95647 1.00632 0.98152 1.21577 1.00205 0.99865 0.93668 1.22204 0.87046 0.98754 0.99811 1.61978 1.07414 1.55101 1.01730 1.22051 1.00806 0.95433 0.89164 1.21635 1.01741 1.00229 0.91317 1.21239 1.00090 0.93834 0.85126 1.45914 1.56649 1.28046 1.06617 1.21183 0.77936 0.85812 0.85224 1.90686 1.41573 1.28753 1.85958 1.21679 1.04579 0.99838 0.90979 1.21282 1.00421 0.98676 0.93246 1.21348 1.00342 0.98450 0.93047 1.19582 0.96163 0.95699 0.94047 1.21557 1.33888 1.08653 0.92858 0.94436 1.25980 0.97086 1.00404 0.95707 1.70060 1.48421 1.40345 1.00292 0.85701 0.79239 0.79597 0.78386 1.19232 1.20666 1.17670 0.91976 0.91186 0.92678 0.91487 0.90776 0.91017 0.92544 0.91451 0.90753 0.89940 0.95605 0.95160 0.89811 0.89821 0.90358 0.92899 0.92589 0.74528 0.86548 0.86545 0.93112 0.93047 0.92394 0.92404 0.96822 0.96930 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.53 71.98 0.61 -0.82 16 2 C 0.08 0.86 2.44 44.94 0.11 0.97 16 3 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 4 C -0.11 -1.00 5.37 30.65 0.16 -0.83 16 5 C -0.12 -1.04 6.00 30.67 0.18 -0.86 16 6 C -0.12 -1.03 6.09 30.65 0.19 -0.85 16 7 C 0.05 0.52 5.30 86.33 0.46 0.98 16 8 N -0.54 -6.28 4.49 -871.08 -3.91 -10.19 16 9 C 0.05 0.63 4.69 86.30 0.40 1.03 16 10 C -0.11 -1.18 5.27 30.59 0.16 -1.02 16 11 C 0.12 1.96 5.67 86.38 0.49 2.45 16 12 N -0.72 -12.14 5.56 -463.07 -2.57 -14.71 16 13 C 0.51 12.91 7.83 87.66 0.69 13.60 16 14 O -0.59 -20.80 15.98 -3.03 -0.05 -20.84 16 15 C -0.13 -3.00 5.70 29.85 0.17 -2.83 16 16 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 17 C -0.09 -3.65 5.15 30.60 0.16 -3.49 16 18 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 19 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 20 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 21 C 0.00 0.30 5.47 84.65 0.46 0.76 16 22 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 23 Si 0.95 46.27 27.47 68.60 1.88 48.15 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.25 -11.79 6.54 99.48 0.65 -11.13 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.54 8.13 -2.39 -0.02 0.53 16 29 H 0.05 0.56 6.56 -2.38 -0.02 0.54 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.50 8.14 -2.38 -0.02 0.49 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.79 6.23 -2.39 -0.01 0.77 16 37 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.03 0.39 8.12 -2.39 -0.02 0.37 16 39 H 0.08 0.99 5.80 -2.38 -0.01 0.98 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.72 6.44 -2.39 -0.02 0.71 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.42 4.22 8.47 -92.71 -0.79 3.44 16 45 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 48 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 49 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 50 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 52 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 53 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -74.52 407.22 0.41 -74.11 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.00 Total: 10.02 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.75 Total: -26.06 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -6.18 Total: -85.38 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -74.52 0.41 -74.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588256396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.911 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds