Wall clock time and date at job start Tue Mar 31 2020 10:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 N 1.46900 * 109.47512 * 119.99922 * 2 1 3 5 5 C 1.46848 * 110.99983 * 298.95344 * 4 2 1 6 6 C 1.53039 * 109.52175 * 174.15827 * 5 4 2 7 7 C 1.53110 * 109.27702 * 59.17957 * 6 5 4 8 8 C 1.53126 * 109.16402 * 302.34309 * 7 6 5 9 9 H 1.08996 * 109.49915 * 297.67677 * 8 7 6 10 10 C 1.52996 * 109.50302 * 177.59556 * 8 7 6 11 11 N 1.46499 * 109.47369 * 65.08127 * 10 8 7 12 12 C 1.34776 * 120.00217 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47188 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47510 * 119.99847 * 22 20 18 25 25 H 1.48506 * 109.47246 * 239.99882 * 22 20 18 26 26 C 1.46845 * 110.99559 * 174.69956 * 4 2 1 27 27 H 1.09006 * 109.47233 * 299.99722 * 1 2 3 28 28 H 1.09003 * 109.47594 * 59.99779 * 1 2 3 29 29 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46749 * 240.00307 * 2 1 3 31 31 H 1.08998 * 109.47189 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47350 * 300.00026 * 3 2 1 33 33 H 1.08994 * 109.47579 * 60.00093 * 3 2 1 34 34 H 1.09001 * 109.45823 * 54.14400 * 5 4 2 35 35 H 1.08990 * 109.45394 * 294.17105 * 5 4 2 36 36 H 1.09007 * 109.50113 * 299.23827 * 6 5 4 37 37 H 1.08998 * 109.50006 * 179.12565 * 6 5 4 38 38 H 1.09000 * 109.52314 * 182.44080 * 7 6 5 39 39 H 1.09002 * 109.57759 * 62.28530 * 7 6 5 40 40 H 1.09004 * 109.47298 * 305.07967 * 10 8 7 41 41 H 1.09001 * 109.46993 * 185.08381 * 10 8 7 42 42 H 0.97002 * 120.00016 * 359.97438 * 11 10 8 43 43 H 1.09000 * 109.47722 * 59.99170 * 14 12 11 44 44 H 1.09001 * 109.46665 * 299.99502 * 14 12 11 45 45 H 1.08996 * 109.47452 * 59.99830 * 15 14 12 46 46 H 1.09001 * 109.46997 * 299.99404 * 15 14 12 47 47 H 1.09001 * 109.47502 * 60.00153 * 16 15 14 48 48 H 1.09001 * 109.47289 * 299.99950 * 16 15 14 49 49 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 50 50 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 51 51 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 52 52 H 1.08997 * 109.42682 * 65.81024 * 26 4 2 53 53 H 1.08992 * 109.49752 * 305.83849 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5695 -0.0123 2.4205 6 6 1.9729 -0.8380 3.6442 7 6 3.4948 -1.0048 3.6621 8 6 3.9427 -1.6717 2.3585 9 1 3.5013 -2.6657 2.2880 10 6 5.4682 -1.7878 2.3421 11 7 5.9004 -2.6954 3.4078 12 6 7.2118 -2.9508 3.5849 13 8 8.0342 -2.4296 2.8617 14 6 7.6563 -3.8849 4.6807 15 6 9.1818 -4.0009 4.6644 16 6 9.6331 -4.9488 5.7774 17 6 11.1586 -5.0653 5.7607 18 6 11.6031 -5.9994 6.8565 19 1 10.8708 -6.4632 7.5008 20 6 12.9447 -6.2611 7.0373 21 7 13.8364 -5.6959 6.2532 22 14 13.4957 -7.4184 8.3962 23 1 12.3071 -7.9186 9.1327 24 1 14.2294 -8.5649 7.8027 25 1 14.3886 -6.6913 9.3339 26 6 3.4822 -0.8226 1.1715 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.4851 0.0962 2.3969 35 1 2.0319 0.9730 2.4787 36 1 1.4998 -1.8188 3.5935 37 1 1.6522 -0.3252 4.5510 38 1 3.7829 -1.6288 4.5081 39 1 3.9683 -0.0272 3.7527 40 1 5.9093 -0.8038 2.5018 41 1 5.7924 -2.1791 1.3778 42 1 5.2427 -3.1120 3.9865 43 1 7.2157 -4.8689 4.5205 44 1 7.3316 -3.4941 5.6451 45 1 9.6228 -3.0171 4.8245 46 1 9.5061 -4.3919 3.7000 47 1 9.1922 -5.9328 5.6177 48 1 9.3088 -4.5575 6.7417 49 1 11.4825 -5.4570 4.7964 50 1 11.5999 -4.0815 5.9201 51 1 14.7803 -5.8797 6.3806 52 1 3.9354 0.1666 1.2350 53 1 3.7870 -1.3026 0.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588328323.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:25 Heat of formation + Delta-G solvation = -77.149012 kcal Electronic energy + Delta-G solvation = -25394.778787 eV Core-core repulsion = 21878.524001 eV Total energy + Delta-G solvation = -3516.254785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30351 -39.41989 -36.52323 -34.87282 -34.19270 -32.60905 -31.76453 -30.85447 -29.63390 -27.76228 -26.60443 -25.30234 -24.42050 -22.84745 -22.12407 -20.68686 -20.16147 -19.90866 -19.61949 -16.99496 -16.48420 -16.22223 -16.05197 -15.75961 -15.38789 -15.06261 -14.94733 -14.46611 -14.39100 -14.32601 -13.80683 -13.73545 -13.32168 -13.28309 -12.65585 -12.59701 -12.56001 -12.41392 -12.17800 -11.98209 -11.79189 -11.65063 -11.57022 -11.50450 -11.17538 -11.06625 -10.97126 -10.73620 -10.67942 -10.50173 -10.46127 -10.37695 -9.76797 -9.58111 -9.18781 -9.11790 -8.94124 -8.70666 -8.28492 -5.93053 -3.95446 2.78587 3.08420 3.34682 3.41792 3.45796 3.48434 4.26737 4.27881 4.40617 4.49140 4.50985 4.63254 4.74895 4.80595 4.84055 4.94368 4.98904 5.09325 5.13488 5.15220 5.24806 5.28873 5.32648 5.35523 5.37905 5.41527 5.43266 5.47183 5.52743 5.54322 5.64704 5.68619 5.75452 5.75931 5.83556 5.91813 6.00779 6.18123 6.34047 6.37106 6.58909 6.67247 6.68099 6.88050 7.06120 7.23522 7.48461 7.77137 7.93236 8.08714 8.32106 8.50618 9.12570 9.68163 11.18303 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.044762 B = 0.001652 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.387221 B =16941.266485 C =17300.267696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.531 5.531 5 C 0.048 3.952 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.095 4.095 9 H 0.086 0.914 10 C 0.125 3.875 11 N -0.737 5.737 12 C 0.511 3.489 13 O -0.537 6.537 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.062 3.938 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.259 0.741 52 H 0.039 0.961 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.345 13.338 -10.937 35.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.248 4.248 4 N -0.255 5.255 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.114 4.114 9 H 0.105 0.895 10 C 0.000 4.000 11 N -0.390 5.390 12 C 0.298 3.702 13 O -0.412 6.412 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.066 4.066 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.069 0.931 52 H 0.058 0.942 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.755 13.261 -11.504 35.412 hybrid contribution 0.429 0.069 0.969 1.062 sum -30.325 13.330 -10.535 34.761 Atomic orbital electron populations 1.21878 0.94227 1.02508 1.01672 1.21700 0.95818 0.92426 0.93310 1.22496 1.01670 0.98146 1.02442 1.62124 1.10622 1.50887 1.01845 1.22186 1.00535 0.95520 0.89687 1.21589 0.95881 1.01060 0.96951 1.21659 0.95819 1.00954 0.97062 1.21405 0.94056 1.00748 0.95205 0.89549 1.21261 0.93173 0.94223 0.91322 1.46075 1.07974 1.49168 1.35831 1.21096 0.81587 0.81936 0.85535 1.90706 1.52315 1.51369 1.46859 1.21788 1.00219 0.98849 0.96999 1.21445 0.90822 1.01190 1.00668 1.21651 1.00253 0.96993 0.95902 1.19108 0.88714 0.96980 0.97027 1.21331 0.91885 1.26928 1.15640 0.92696 1.25042 0.96956 0.96281 0.96316 1.69984 1.01166 1.43823 1.38488 0.86559 0.78631 0.80820 0.82099 1.19787 1.21064 1.21077 1.22001 0.87465 0.98706 0.98436 0.92547 0.92247 0.91761 0.89890 0.92388 0.92010 0.92332 0.90447 0.94612 0.91017 0.91462 0.91500 0.91975 0.91743 0.91534 0.76668 0.89171 0.89217 0.91857 0.91825 0.93482 0.93499 0.96572 0.96584 0.93126 0.94238 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.00 37.16 0.33 -0.37 16 2 C 0.08 0.43 2.96 -67.71 -0.20 0.23 16 3 C -0.19 -1.02 8.50 37.16 0.32 -0.70 16 4 N -0.53 -3.47 4.64 -226.70 -1.05 -4.52 16 5 C 0.05 0.29 4.63 -3.83 -0.02 0.27 16 6 C -0.12 -0.67 6.09 -26.65 -0.16 -0.83 16 7 C -0.12 -0.74 5.13 -26.61 -0.14 -0.88 16 8 C -0.10 -0.65 2.39 -90.54 -0.22 -0.87 16 9 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 10 C 0.12 1.15 5.07 -4.04 -0.02 1.13 16 11 N -0.74 -7.35 5.31 -60.30 -0.32 -7.67 16 12 C 0.51 7.20 7.83 -10.99 -0.09 7.12 16 13 O -0.54 -9.98 15.98 5.56 0.09 -9.89 16 14 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 15 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 19 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 22 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 26 C 0.06 0.42 4.32 -3.83 -0.02 0.41 16 27 H 0.06 0.27 6.30 -51.93 -0.33 -0.06 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.06 0.35 6.66 -51.93 -0.35 0.00 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 6.52 -51.93 -0.34 -0.01 16 34 H 0.08 0.42 6.04 -51.93 -0.31 0.11 16 35 H 0.04 0.23 6.62 -51.93 -0.34 -0.12 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.40 7.26 -51.93 -0.38 0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.40 2.88 7.67 -40.82 -0.31 2.57 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 46 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 52 H 0.04 0.28 6.73 -51.93 -0.35 -0.07 16 53 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -33.69 405.21 -10.90 -44.59 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -10.27 Total: -4.12 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.17 Total: -14.54 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.64 Total: -39.19 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.69 -10.90 -44.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588328323.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.556 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds