Wall clock time and date at job start Tue Mar 31 2020 10:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46975 * 2 1 4 4 N 1.46900 * 109.47512 * 119.99922 * 2 1 3 5 5 C 1.46848 * 110.99983 * 298.95344 * 4 2 1 6 6 C 1.53039 * 109.52175 * 174.15827 * 5 4 2 7 7 C 1.53110 * 109.27702 * 59.17957 * 6 5 4 8 8 C 1.53126 * 109.16402 * 302.34309 * 7 6 5 9 9 H 1.08996 * 109.49915 * 297.67677 * 8 7 6 10 10 C 1.52996 * 109.50302 * 177.59556 * 8 7 6 11 11 N 1.46499 * 109.47369 * 65.08127 * 10 8 7 12 12 C 1.34776 * 120.00217 * 180.02562 * 11 10 8 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47188 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47510 * 119.99847 * 22 20 18 25 25 H 1.48506 * 109.47246 * 239.99882 * 22 20 18 26 26 C 1.46845 * 110.99559 * 174.69956 * 4 2 1 27 27 H 1.09006 * 109.47233 * 299.99722 * 1 2 3 28 28 H 1.09003 * 109.47594 * 59.99779 * 1 2 3 29 29 H 1.09005 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46749 * 240.00307 * 2 1 3 31 31 H 1.08998 * 109.47189 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47350 * 300.00026 * 3 2 1 33 33 H 1.08994 * 109.47579 * 60.00093 * 3 2 1 34 34 H 1.09001 * 109.45823 * 54.14400 * 5 4 2 35 35 H 1.08990 * 109.45394 * 294.17105 * 5 4 2 36 36 H 1.09007 * 109.50113 * 299.23827 * 6 5 4 37 37 H 1.08998 * 109.50006 * 179.12565 * 6 5 4 38 38 H 1.09000 * 109.52314 * 182.44080 * 7 6 5 39 39 H 1.09002 * 109.57759 * 62.28530 * 7 6 5 40 40 H 1.09004 * 109.47298 * 305.07967 * 10 8 7 41 41 H 1.09001 * 109.46993 * 185.08381 * 10 8 7 42 42 H 0.97002 * 120.00016 * 359.97438 * 11 10 8 43 43 H 1.09000 * 109.47722 * 59.99170 * 14 12 11 44 44 H 1.09001 * 109.46665 * 299.99502 * 14 12 11 45 45 H 1.08996 * 109.47452 * 59.99830 * 15 14 12 46 46 H 1.09001 * 109.46997 * 299.99404 * 15 14 12 47 47 H 1.09001 * 109.47502 * 60.00153 * 16 15 14 48 48 H 1.09001 * 109.47289 * 299.99950 * 16 15 14 49 49 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 50 50 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 51 51 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 52 52 H 1.08997 * 109.42682 * 65.81024 * 26 4 2 53 53 H 1.08992 * 109.49752 * 305.83849 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5695 -0.0123 2.4205 6 6 1.9729 -0.8380 3.6442 7 6 3.4948 -1.0048 3.6621 8 6 3.9427 -1.6717 2.3585 9 1 3.5013 -2.6657 2.2880 10 6 5.4682 -1.7878 2.3421 11 7 5.9004 -2.6954 3.4078 12 6 7.2118 -2.9508 3.5849 13 8 8.0342 -2.4296 2.8617 14 6 7.6563 -3.8849 4.6807 15 6 9.1818 -4.0009 4.6644 16 6 9.6331 -4.9488 5.7774 17 6 11.1586 -5.0653 5.7607 18 6 11.6031 -5.9994 6.8565 19 1 10.8708 -6.4632 7.5008 20 6 12.9447 -6.2611 7.0373 21 7 13.8364 -5.6959 6.2532 22 14 13.4957 -7.4184 8.3962 23 1 12.3071 -7.9186 9.1327 24 1 14.2294 -8.5649 7.8027 25 1 14.3886 -6.6913 9.3339 26 6 3.4822 -0.8226 1.1715 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.4851 0.0962 2.3969 35 1 2.0319 0.9730 2.4787 36 1 1.4998 -1.8188 3.5935 37 1 1.6522 -0.3252 4.5510 38 1 3.7829 -1.6288 4.5081 39 1 3.9683 -0.0272 3.7527 40 1 5.9093 -0.8038 2.5018 41 1 5.7924 -2.1791 1.3778 42 1 5.2427 -3.1120 3.9865 43 1 7.2157 -4.8689 4.5205 44 1 7.3316 -3.4941 5.6451 45 1 9.6228 -3.0171 4.8245 46 1 9.5061 -4.3919 3.7000 47 1 9.1922 -5.9328 5.6177 48 1 9.3088 -4.5575 6.7417 49 1 11.4825 -5.4570 4.7964 50 1 11.5999 -4.0815 5.9201 51 1 14.7803 -5.8797 6.3806 52 1 3.9354 0.1666 1.2350 53 1 3.7870 -1.3026 0.2417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588328323.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:24 Heat of formation + Delta-G solvation = -98.551198 kcal Electronic energy + Delta-G solvation = -25395.706855 eV Core-core repulsion = 21878.524001 eV Total energy + Delta-G solvation = -3517.182854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04504 -40.31322 -37.26713 -36.56069 -34.98423 -34.59419 -32.49531 -31.58382 -31.08339 -28.25422 -27.83262 -26.53319 -25.14657 -23.96979 -23.21943 -21.77892 -21.41419 -20.97314 -20.13863 -18.41863 -17.92220 -17.19750 -17.01702 -16.81398 -16.47175 -16.03561 -15.83320 -15.53066 -15.25170 -15.02519 -14.72636 -14.64397 -14.51224 -14.03550 -13.89101 -13.67926 -13.56670 -13.28908 -13.10053 -13.07647 -12.87210 -12.82528 -12.60896 -12.30342 -12.26278 -12.13765 -12.12056 -12.01268 -11.64832 -11.60390 -11.36857 -11.34991 -11.25561 -11.20336 -11.13661 -10.73656 -10.55143 -10.07974 -9.21201 -8.18146 -6.30376 1.40962 1.41950 1.55473 1.67956 2.19901 2.42656 2.93817 3.14613 3.69580 3.75839 3.86342 3.89970 4.02416 4.08989 4.15750 4.16786 4.24643 4.34592 4.37855 4.42522 4.51053 4.60257 4.61981 4.70553 4.70894 4.73924 4.79868 4.82938 4.86471 4.87555 4.90060 4.92934 5.03556 5.08414 5.11915 5.18379 5.20912 5.26202 5.30477 5.34634 5.36550 5.39705 5.45380 5.52841 5.58807 5.79122 5.88914 6.16686 6.20580 6.26082 6.58531 6.88352 7.30548 7.39349 8.94288 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.044762 B = 0.001652 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.387221 B =16941.266485 C =17300.267696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 C -0.184 4.184 4 N -0.536 5.536 5 C 0.048 3.952 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.081 4.081 9 H 0.091 0.909 10 C 0.127 3.873 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.591 6.591 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.096 4.096 17 C 0.017 3.983 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.063 3.937 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.417 0.583 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.061 0.939 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.262 0.738 52 H 0.033 0.967 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.923 12.411 -9.410 37.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.260 5.260 5 C -0.080 4.080 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.100 4.100 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.368 5.368 12 C 0.298 3.702 13 O -0.471 6.471 14 C -0.167 4.167 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.181 1.181 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.065 4.065 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.071 0.929 52 H 0.051 0.949 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.406 12.328 -9.961 36.975 hybrid contribution 1.222 0.407 0.433 1.359 sum -32.184 12.734 -9.529 35.899 Atomic orbital electron populations 1.21839 0.93391 1.02357 1.02230 1.21751 0.96453 0.92401 0.92907 1.22445 1.01022 0.98079 1.02731 1.62148 1.10125 1.51280 1.02409 1.22220 1.00894 0.95292 0.89576 1.21567 0.95170 1.01131 0.97210 1.21654 0.96359 1.00564 0.96778 1.21276 0.91959 1.01085 0.95729 0.89058 1.21270 0.94798 0.93216 0.90473 1.45870 1.07001 1.48287 1.35669 1.21204 0.82343 0.81560 0.85100 1.90696 1.53993 1.53579 1.48879 1.21669 0.96282 1.00531 0.98267 1.21245 0.94681 0.99076 0.98464 1.21451 0.95683 0.98573 0.97612 1.19076 0.93119 0.94761 0.95055 1.21796 0.92613 1.27308 1.16220 0.91522 1.26096 0.97108 0.98115 0.99093 1.70139 1.01667 1.45472 1.40561 0.85323 0.78524 0.78194 0.78516 1.18062 1.20484 1.20493 1.21959 0.87921 0.98343 0.98315 0.92322 0.91376 0.92213 0.90182 0.93308 0.91295 0.92433 0.89773 0.95101 0.90961 0.90480 0.90687 0.92817 0.92995 0.92622 0.74565 0.86305 0.86295 0.93977 0.93964 0.92030 0.92019 0.99719 0.99719 0.92883 0.94869 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.00 71.98 0.65 -0.52 16 2 C 0.07 0.76 2.96 44.91 0.13 0.90 16 3 C -0.18 -1.85 8.50 71.98 0.61 -1.24 16 4 N -0.54 -6.39 4.64 -871.14 -4.04 -10.43 16 5 C 0.05 0.50 4.63 86.33 0.40 0.90 16 6 C -0.11 -1.06 6.09 30.64 0.19 -0.87 16 7 C -0.12 -1.25 5.13 30.67 0.16 -1.10 16 8 C -0.08 -1.00 2.39 -10.74 -0.03 -1.03 16 9 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.13 2.26 5.07 86.38 0.44 2.70 16 11 N -0.72 -13.01 5.31 -463.06 -2.46 -15.47 16 12 C 0.51 13.88 7.83 87.66 0.69 14.57 16 13 O -0.59 -22.50 15.98 -3.04 -0.05 -22.55 16 14 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 15 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 16 C -0.10 -3.95 5.15 30.60 0.16 -3.79 16 17 C 0.02 0.95 4.97 29.85 0.15 1.09 16 18 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 20 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 21 N -0.94 -59.44 13.29 21.45 0.28 -59.16 16 22 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 C 0.06 0.82 4.32 86.33 0.37 1.19 16 27 H 0.06 0.46 6.30 -2.38 -0.02 0.45 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.05 0.58 6.66 -2.39 -0.02 0.56 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.59 6.52 -2.39 -0.02 0.57 16 34 H 0.08 0.77 6.04 -2.39 -0.01 0.76 16 35 H 0.03 0.36 6.62 -2.39 -0.02 0.34 16 36 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.70 7.26 -2.39 -0.02 0.68 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.42 4.72 7.67 -92.71 -0.71 4.01 16 43 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 46 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 47 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 49 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 50 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 51 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 52 H 0.03 0.47 6.73 -2.39 -0.02 0.46 16 53 H 0.07 1.00 8.07 -2.39 -0.02 0.98 16 Total: -1.00 -75.20 405.21 0.82 -74.38 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.14 Total: 11.12 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 4.92 Total: -25.00 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -6.21 Total: -85.06 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.20 0.82 -74.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588328323.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.173 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds