Wall clock time and date at job start Tue Mar 31 2020 09:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 C 1.50706 * 109.46845 * 119.99572 * 2 1 3 5 5 H 1.08000 * 119.99662 * 118.06284 * 4 2 1 6 6 C 1.37876 * 119.99970 * 298.06037 * 4 2 1 7 7 N 1.31515 * 119.99496 * 195.02112 * 6 4 2 8 8 Si 1.86799 * 120.00229 * 15.29985 * 6 4 2 9 9 H 1.48502 * 109.47006 * 84.72342 * 8 6 4 10 10 H 1.48497 * 109.47076 * 204.72601 * 8 6 4 11 11 H 1.48505 * 109.47016 * 324.72580 * 8 6 4 12 12 C 1.52992 * 109.47443 * 239.99963 * 2 1 3 13 13 N 1.46901 * 109.47235 * 59.99968 * 12 2 1 14 14 C 1.46904 * 111.00089 * 179.97438 * 13 12 2 15 15 C 1.53121 * 109.52301 * 274.68455 * 14 13 12 16 16 C 1.53038 * 109.27753 * 182.44212 * 15 14 13 17 17 N 1.46845 * 109.52431 * 59.17603 * 16 15 14 18 18 C 1.46896 * 110.99907 * 174.16141 * 17 16 15 19 19 C 1.52998 * 109.47287 * 199.99786 * 18 17 16 20 20 H 1.09004 * 110.33022 * 307.92448 * 19 18 17 21 21 C 1.54478 * 110.37577 * 185.67944 * 19 18 17 22 22 C 1.54510 * 104.06338 * 217.19002 * 21 19 18 23 23 C 1.54474 * 104.06182 * 359.97438 * 22 21 19 24 24 O 1.44422 * 110.37294 * 70.29566 * 19 18 17 25 25 C 1.46846 * 111.19751 * 298.26045 * 17 16 15 26 26 C 1.53031 * 109.52745 * 61.74214 * 25 17 16 27 27 H 1.08995 * 109.47645 * 300.00098 * 1 2 3 28 28 H 1.08999 * 109.46778 * 60.00746 * 1 2 3 29 29 H 1.09002 * 109.46803 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47333 * 189.29928 * 3 2 1 31 31 H 1.08996 * 109.47294 * 309.30015 * 3 2 1 32 32 H 1.08998 * 109.46984 * 69.29898 * 3 2 1 33 33 H 0.97000 * 119.99480 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47139 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47342 * 299.99940 * 12 2 1 36 36 H 1.00899 * 110.99970 * 303.95026 * 13 12 2 37 37 H 1.08999 * 109.52092 * 34.87129 * 14 13 12 38 38 H 1.09002 * 109.49980 * 302.38042 * 15 14 13 39 39 H 1.09004 * 109.50383 * 62.49433 * 15 14 13 40 40 H 1.08997 * 109.45969 * 299.15881 * 16 15 14 41 41 H 1.09002 * 109.45100 * 179.18611 * 16 15 14 42 42 H 1.09005 * 109.47067 * 319.99909 * 18 17 16 43 43 H 1.09007 * 109.47018 * 79.99589 * 18 17 16 44 44 H 1.09003 * 110.50805 * 335.83210 * 21 19 18 45 45 H 1.08998 * 110.51689 * 98.40335 * 21 19 18 46 46 H 1.09002 * 110.50836 * 118.63901 * 22 21 19 47 47 H 1.08998 * 110.50835 * 241.21674 * 22 21 19 48 48 H 1.09001 * 110.37501 * 142.81172 * 23 22 21 49 49 H 1.09003 * 110.37641 * 265.03897 * 23 22 21 50 50 H 1.09002 * 109.46210 * 301.72462 * 25 17 16 51 51 H 1.09002 * 109.46053 * 181.76137 * 25 17 16 52 52 H 1.09004 * 109.50427 * 180.88123 * 26 25 17 53 53 H 1.09002 * 109.50110 * 60.76040 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6271 -1.6064 1.1318 6 6 1.7325 -0.2163 2.4824 7 7 2.3966 -0.6434 3.5341 8 14 0.3778 1.0537 2.6855 9 1 -0.9338 0.3657 2.7927 10 1 0.6232 1.8465 3.9170 11 1 0.3672 1.9588 1.5081 12 6 2.0401 -0.7212 -1.2491 13 7 1.5504 -0.0288 -2.4486 14 6 2.0220 -0.6945 -3.6703 15 6 3.4170 -0.1756 -4.0299 16 6 3.8773 -0.8272 -5.3359 17 7 2.9250 -0.5065 -6.4067 18 6 3.4063 -0.9992 -7.7042 19 6 2.6925 -0.2498 -8.8310 20 1 1.6126 -0.2908 -8.6883 21 6 3.0767 -0.8478 -10.2025 22 6 3.1614 0.3798 -11.1369 23 6 2.8177 1.5742 -10.2196 24 8 3.1428 1.1213 -8.8870 25 6 1.5890 -1.0362 -6.1053 26 6 1.0603 -0.3908 -4.8224 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1172 1.4472 -0.1661 31 1 1.5474 2.0020 -0.7952 32 1 1.8185 1.9062 0.9613 33 1 2.1854 -0.2961 4.4149 34 1 3.1301 -0.7208 -1.2493 35 1 1.6768 -1.7489 -1.2492 36 1 0.5439 0.0412 -2.4402 37 1 2.0643 -1.7711 -3.5052 38 1 3.3813 0.9066 -4.1560 39 1 4.1157 -0.4266 -3.2318 40 1 3.9260 -1.9082 -5.2048 41 1 4.8642 -0.4488 -5.6022 42 1 4.4808 -0.8322 -7.7804 43 1 3.1976 -2.0658 -7.7879 44 1 4.0424 -1.3499 -10.1431 45 1 2.3081 -1.5399 -10.5463 46 1 4.1690 0.4845 -11.5395 47 1 2.4350 0.2952 -11.9452 48 1 3.4227 2.4416 -10.4833 49 1 1.7573 1.8158 -10.2925 50 1 1.6484 -2.1163 -5.9707 51 1 0.9139 -0.8099 -6.9306 52 1 0.0752 -0.7958 -4.5905 53 1 0.9876 0.6879 -4.9610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594515075.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:05 Heat of formation + Delta-G solvation = -34.046470 kcal Electronic energy + Delta-G solvation = -26871.222291 eV Core-core repulsion = 23356.836572 eV Total energy + Delta-G solvation = -3514.385719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94347 -38.89114 -37.01665 -34.70020 -32.44086 -32.04277 -31.10032 -30.83075 -29.11933 -26.17179 -25.74369 -25.01478 -24.17090 -23.11717 -22.46358 -21.57824 -21.00273 -19.59823 -18.61115 -16.91713 -16.26493 -16.04762 -15.86259 -15.74446 -15.39954 -14.81579 -14.70568 -14.28848 -14.19245 -14.01134 -13.51021 -13.18908 -12.93400 -12.71338 -12.61148 -12.48779 -12.32823 -12.12817 -12.04576 -11.87221 -11.79759 -11.61285 -11.33770 -11.21097 -11.11814 -11.02017 -10.77643 -10.48906 -10.31072 -10.15430 -9.96767 -9.93929 -9.85722 -9.72878 -8.92431 -8.50958 -8.37856 -8.30386 -7.79429 -6.04733 -3.99307 3.34726 3.44671 3.47548 3.55902 3.75795 4.25090 4.41732 4.47937 4.55498 4.56466 4.70117 4.82827 4.94140 4.98107 5.06493 5.13261 5.26149 5.28834 5.29237 5.34024 5.36703 5.39374 5.46062 5.52739 5.58628 5.63405 5.70106 5.71742 5.79814 5.83512 5.98876 6.10828 6.15582 6.18575 6.30553 6.32763 6.52028 6.60600 6.63627 6.66842 6.82915 6.87761 6.99957 7.01126 7.03373 7.13223 7.46928 7.59782 7.69762 7.91377 8.00923 8.59504 9.00559 9.62186 11.08707 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.002377 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.411807 B =11776.133099 C =11956.145781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.070 0.930 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.878 3.122 9 H -0.288 1.288 10 H -0.306 1.306 11 H -0.241 1.241 12 C 0.086 3.914 13 N -0.685 5.685 14 C 0.087 3.913 15 C -0.102 4.102 16 C 0.059 3.941 17 N -0.530 5.530 18 C 0.060 3.940 19 C 0.082 3.918 20 H 0.068 0.932 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.041 3.959 24 O -0.353 6.353 25 C 0.059 3.941 26 C -0.117 4.117 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.335 0.665 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.030 0.970 51 H 0.071 0.929 52 H 0.062 0.938 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -0.200 -29.167 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.039 3.961 3 C -0.186 4.186 4 C -0.549 4.549 5 H 0.088 0.912 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.710 3.290 9 H -0.216 1.216 10 H -0.235 1.235 11 H -0.166 1.166 12 C -0.042 4.042 13 N -0.317 5.317 14 C -0.023 4.023 15 C -0.141 4.141 16 C -0.069 4.069 17 N -0.254 5.254 18 C -0.068 4.068 19 C 0.024 3.976 20 H 0.086 0.914 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.036 4.036 24 O -0.271 6.271 25 C -0.069 4.069 26 C -0.155 4.155 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.155 0.845 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.048 0.952 51 H 0.090 0.910 52 H 0.081 0.919 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.189 0.888 -28.799 28.813 hybrid contribution -1.380 -1.305 0.171 1.907 sum -1.191 -0.416 -28.627 28.655 Atomic orbital electron populations 1.22313 0.99500 0.99868 0.98687 1.18476 0.90957 0.93447 0.93231 1.22125 0.99790 0.97370 0.99313 1.20861 1.33532 1.11945 0.88610 0.91208 1.24977 0.95949 0.96021 0.95926 1.69981 1.39337 1.44791 0.99288 0.87452 0.82375 0.82594 0.76558 1.21637 1.23458 1.16610 1.21977 0.99493 0.94104 0.88620 1.60610 1.15863 1.54046 1.01160 1.21503 0.95059 0.95601 0.90137 1.21560 0.96063 1.01781 0.94682 1.22129 0.95477 0.97730 0.91547 1.61834 1.02416 1.59717 1.01448 1.22144 1.00157 0.95802 0.88670 1.22991 0.98214 0.82770 0.93618 0.91432 1.22987 1.02762 0.98271 0.95093 1.22927 1.02690 0.94987 0.98685 1.23391 1.00223 0.97199 0.82833 1.89286 1.81767 1.26029 1.30042 1.22091 0.90545 0.96305 0.97979 1.21754 0.97770 1.02484 0.93515 0.94280 0.94821 0.93728 0.94111 0.94835 0.93672 0.92809 0.91785 0.96403 0.84541 0.94842 0.90330 0.91412 0.95325 0.90730 0.90026 0.93446 0.90587 0.90623 0.90742 0.90730 0.89258 0.92506 0.95194 0.91038 0.91937 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 7.47 37.16 0.28 -2.87 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.13 -2.91 7.50 37.16 0.28 -2.63 16 4 C -0.51 -14.26 8.62 -34.44 -0.30 -14.56 16 5 H 0.07 2.11 7.99 -52.49 -0.42 1.70 16 6 C 0.07 2.11 5.30 -17.82 -0.09 2.02 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 8 Si 0.88 22.05 22.79 -169.99 -3.87 18.17 16 9 H -0.29 -7.20 7.10 56.52 0.40 -6.80 16 10 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.24 -5.62 4.59 56.52 0.26 -5.36 16 12 C 0.09 1.73 4.37 -3.83 -0.02 1.71 16 13 N -0.68 -11.46 5.71 -106.59 -0.61 -12.07 16 14 C 0.09 1.24 2.56 -67.59 -0.17 1.07 16 15 C -0.10 -1.42 5.59 -26.65 -0.15 -1.57 16 16 C 0.06 0.69 5.43 -3.83 -0.02 0.67 16 17 N -0.53 -5.98 4.58 -234.67 -1.08 -7.06 16 18 C 0.06 0.56 4.61 -3.83 -0.02 0.54 16 19 C 0.08 0.73 3.38 -25.96 -0.09 0.64 16 20 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 21 C -0.15 -0.98 6.63 -25.16 -0.17 -1.15 16 22 C -0.16 -0.92 7.09 -25.17 -0.18 -1.10 16 23 C 0.04 0.31 7.63 37.93 0.29 0.60 16 24 O -0.35 -3.92 11.35 -35.23 -0.40 -4.32 16 25 C 0.06 0.63 5.29 -3.84 -0.02 0.61 16 26 C -0.12 -1.41 5.36 -26.65 -0.14 -1.55 16 27 H 0.04 0.89 2.58 -51.93 -0.13 0.76 16 28 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.03 0.69 7.88 -51.93 -0.41 0.28 16 32 H 0.04 1.07 3.95 -51.93 -0.21 0.87 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.06 1.34 7.51 -51.93 -0.39 0.95 16 35 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.34 5.41 6.40 -39.29 -0.25 5.16 16 37 H 0.03 0.50 7.80 -51.93 -0.41 0.10 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.00 7.54 -51.93 -0.39 0.60 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 42 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 43 H 0.05 0.38 8.00 -51.92 -0.42 -0.03 16 44 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.68 6.65 -51.93 -0.35 0.34 16 52 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 53 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -30.83 381.79 -10.09 -40.92 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -10.05 Total: 2.22 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.61 Total: -16.73 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.91 Total: -46.01 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.40 Total: -4.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -3.87 Total: 18.17 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.83 -10.09 -40.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594515075.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.869 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds