Wall clock time and date at job start Tue Mar 31 2020 09:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46776 * 2 1 4 4 C 1.50706 * 109.46845 * 119.99572 * 2 1 3 5 5 H 1.08000 * 119.99662 * 118.06284 * 4 2 1 6 6 C 1.37876 * 119.99970 * 298.06037 * 4 2 1 7 7 N 1.31515 * 119.99496 * 195.02112 * 6 4 2 8 8 Si 1.86799 * 120.00229 * 15.29985 * 6 4 2 9 9 H 1.48502 * 109.47006 * 84.72342 * 8 6 4 10 10 H 1.48497 * 109.47076 * 204.72601 * 8 6 4 11 11 H 1.48505 * 109.47016 * 324.72580 * 8 6 4 12 12 C 1.52992 * 109.47443 * 239.99963 * 2 1 3 13 13 N 1.46901 * 109.47235 * 59.99968 * 12 2 1 14 14 C 1.46904 * 111.00089 * 179.97438 * 13 12 2 15 15 C 1.53121 * 109.52301 * 274.68455 * 14 13 12 16 16 C 1.53038 * 109.27753 * 182.44212 * 15 14 13 17 17 N 1.46845 * 109.52431 * 59.17603 * 16 15 14 18 18 C 1.46896 * 110.99907 * 174.16141 * 17 16 15 19 19 C 1.52998 * 109.47287 * 199.99786 * 18 17 16 20 20 H 1.09004 * 110.33022 * 307.92448 * 19 18 17 21 21 C 1.54478 * 110.37577 * 185.67944 * 19 18 17 22 22 C 1.54510 * 104.06338 * 217.19002 * 21 19 18 23 23 C 1.54474 * 104.06182 * 359.97438 * 22 21 19 24 24 O 1.44422 * 110.37294 * 70.29566 * 19 18 17 25 25 C 1.46846 * 111.19751 * 298.26045 * 17 16 15 26 26 C 1.53031 * 109.52745 * 61.74214 * 25 17 16 27 27 H 1.08995 * 109.47645 * 300.00098 * 1 2 3 28 28 H 1.08999 * 109.46778 * 60.00746 * 1 2 3 29 29 H 1.09002 * 109.46803 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47333 * 189.29928 * 3 2 1 31 31 H 1.08996 * 109.47294 * 309.30015 * 3 2 1 32 32 H 1.08998 * 109.46984 * 69.29898 * 3 2 1 33 33 H 0.97000 * 119.99480 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47139 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47342 * 299.99940 * 12 2 1 36 36 H 1.00899 * 110.99970 * 303.95026 * 13 12 2 37 37 H 1.08999 * 109.52092 * 34.87129 * 14 13 12 38 38 H 1.09002 * 109.49980 * 302.38042 * 15 14 13 39 39 H 1.09004 * 109.50383 * 62.49433 * 15 14 13 40 40 H 1.08997 * 109.45969 * 299.15881 * 16 15 14 41 41 H 1.09002 * 109.45100 * 179.18611 * 16 15 14 42 42 H 1.09005 * 109.47067 * 319.99909 * 18 17 16 43 43 H 1.09007 * 109.47018 * 79.99589 * 18 17 16 44 44 H 1.09003 * 110.50805 * 335.83210 * 21 19 18 45 45 H 1.08998 * 110.51689 * 98.40335 * 21 19 18 46 46 H 1.09002 * 110.50836 * 118.63901 * 22 21 19 47 47 H 1.08998 * 110.50835 * 241.21674 * 22 21 19 48 48 H 1.09001 * 110.37501 * 142.81172 * 23 22 21 49 49 H 1.09003 * 110.37641 * 265.03897 * 23 22 21 50 50 H 1.09002 * 109.46210 * 301.72462 * 25 17 16 51 51 H 1.09002 * 109.46053 * 181.76137 * 25 17 16 52 52 H 1.09004 * 109.50427 * 180.88123 * 26 25 17 53 53 H 1.09002 * 109.50110 * 60.76040 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6271 -1.6064 1.1318 6 6 1.7325 -0.2163 2.4824 7 7 2.3966 -0.6434 3.5341 8 14 0.3778 1.0537 2.6855 9 1 -0.9338 0.3657 2.7927 10 1 0.6232 1.8465 3.9170 11 1 0.3672 1.9588 1.5081 12 6 2.0401 -0.7212 -1.2491 13 7 1.5504 -0.0288 -2.4486 14 6 2.0220 -0.6945 -3.6703 15 6 3.4170 -0.1756 -4.0299 16 6 3.8773 -0.8272 -5.3359 17 7 2.9250 -0.5065 -6.4067 18 6 3.4063 -0.9992 -7.7042 19 6 2.6925 -0.2498 -8.8310 20 1 1.6126 -0.2908 -8.6883 21 6 3.0767 -0.8478 -10.2025 22 6 3.1614 0.3798 -11.1369 23 6 2.8177 1.5742 -10.2196 24 8 3.1428 1.1213 -8.8870 25 6 1.5890 -1.0362 -6.1053 26 6 1.0603 -0.3908 -4.8224 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1172 1.4472 -0.1661 31 1 1.5474 2.0020 -0.7952 32 1 1.8185 1.9062 0.9613 33 1 2.1854 -0.2961 4.4149 34 1 3.1301 -0.7208 -1.2493 35 1 1.6768 -1.7489 -1.2492 36 1 0.5439 0.0412 -2.4402 37 1 2.0643 -1.7711 -3.5052 38 1 3.3813 0.9066 -4.1560 39 1 4.1157 -0.4266 -3.2318 40 1 3.9260 -1.9082 -5.2048 41 1 4.8642 -0.4488 -5.6022 42 1 4.4808 -0.8322 -7.7804 43 1 3.1976 -2.0658 -7.7879 44 1 4.0424 -1.3499 -10.1431 45 1 2.3081 -1.5399 -10.5463 46 1 4.1690 0.4845 -11.5395 47 1 2.4350 0.2952 -11.9452 48 1 3.4227 2.4416 -10.4833 49 1 1.7573 1.8158 -10.2925 50 1 1.6484 -2.1163 -5.9707 51 1 0.9139 -0.8099 -6.9306 52 1 0.0752 -0.7958 -4.5905 53 1 0.9876 0.6879 -4.9610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594515075.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:04 Heat of formation + Delta-G solvation = -55.880002 kcal Electronic energy + Delta-G solvation = -26872.169064 eV Core-core repulsion = 23356.836572 eV Total energy + Delta-G solvation = -3515.332492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69732 -39.83949 -38.55313 -36.03098 -33.97240 -32.99204 -32.29593 -31.83533 -30.05817 -27.92969 -27.12842 -26.70683 -25.42459 -24.13035 -23.37592 -22.29319 -21.67633 -20.74726 -20.37887 -18.09878 -17.62396 -17.39871 -16.86080 -16.52442 -16.37924 -16.28943 -15.67204 -15.59021 -15.20854 -14.94631 -14.76126 -14.56212 -14.43525 -14.21498 -13.97756 -13.79693 -13.61118 -13.40288 -13.20745 -12.80004 -12.72366 -12.59631 -12.43813 -12.31033 -12.11926 -11.98910 -11.95212 -11.82071 -11.79380 -11.57959 -11.47159 -11.36502 -11.19457 -10.91768 -10.60718 -10.54676 -10.28512 -9.22712 -9.18553 -8.28931 -6.27147 1.36010 1.39728 1.49977 2.36912 2.83794 3.07453 3.10010 3.30103 3.72620 3.81499 3.83766 3.99345 4.06391 4.17671 4.21064 4.28345 4.31542 4.35590 4.42497 4.45167 4.49091 4.57874 4.59728 4.65673 4.67894 4.71332 4.78542 4.84228 4.88028 4.89222 4.89616 4.94425 4.99560 5.04280 5.06407 5.12377 5.14575 5.17015 5.18071 5.22635 5.27115 5.34294 5.45934 5.62718 5.78047 5.88973 6.00718 6.14638 6.23733 6.26034 6.36663 6.64289 6.79957 7.37691 8.88254 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.002377 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.411807 B =11776.133099 C =11956.145781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 C -0.124 4.124 4 C -0.513 4.513 5 H 0.027 0.973 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.937 3.063 9 H -0.282 1.282 10 H -0.315 1.315 11 H -0.207 1.207 12 C 0.102 3.898 13 N -0.681 5.681 14 C 0.088 3.912 15 C -0.098 4.098 16 C 0.066 3.934 17 N -0.543 5.543 18 C 0.061 3.939 19 C 0.080 3.920 20 H 0.067 0.933 21 C -0.149 4.149 22 C -0.151 4.151 23 C 0.033 3.967 24 O -0.387 6.387 25 C 0.062 3.938 26 C -0.109 4.109 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.010 0.990 36 H 0.343 0.657 37 H 0.029 0.971 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.061 0.939 50 H 0.035 0.965 51 H 0.087 0.913 52 H 0.076 0.924 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 0.506 -32.244 32.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.033 3.967 3 C -0.181 4.181 4 C -0.551 4.551 5 H 0.045 0.955 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.210 1.210 10 H -0.244 1.244 11 H -0.131 1.131 12 C -0.027 4.027 13 N -0.314 5.314 14 C -0.022 4.022 15 C -0.137 4.137 16 C -0.062 4.062 17 N -0.268 5.268 18 C -0.067 4.067 19 C 0.022 3.978 20 H 0.085 0.915 21 C -0.187 4.187 22 C -0.188 4.188 23 C -0.043 4.043 24 O -0.307 6.307 25 C -0.066 4.066 26 C -0.147 4.147 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.163 0.837 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.053 0.947 51 H 0.105 0.895 52 H 0.095 0.905 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.654 1.595 -31.926 32.009 hybrid contribution -0.708 -1.587 1.080 2.046 sum -2.363 0.008 -30.846 30.937 Atomic orbital electron populations 1.22226 0.97487 1.00480 0.99913 1.18476 0.92543 0.93463 0.92172 1.22043 0.99573 0.96987 0.99476 1.21195 1.32326 1.10663 0.90907 0.95512 1.25833 0.98202 0.98649 0.95550 1.70129 1.41517 1.47196 0.99926 0.86495 0.79104 0.80575 0.77204 1.20970 1.24401 1.13058 1.21618 0.98390 0.93601 0.89118 1.60530 1.16339 1.53768 1.00751 1.21560 0.95806 0.95023 0.89827 1.21483 0.95717 1.00999 0.95504 1.22006 0.95817 0.97635 0.90759 1.61824 1.02589 1.60409 1.01999 1.22197 0.99997 0.96716 0.87768 1.23067 0.97987 0.82136 0.94615 0.91517 1.22984 1.03425 0.98585 0.93726 1.22922 1.03420 0.93866 0.98636 1.23561 1.00644 0.98129 0.82014 1.89245 1.82219 1.27300 1.31925 1.22087 0.90476 0.96377 0.97677 1.21686 0.97800 1.02118 0.93124 0.95223 0.91166 0.93650 0.95002 0.92270 0.94804 0.92888 0.93506 0.97199 0.83707 0.95345 0.91725 0.93049 0.94945 0.90389 0.90442 0.91928 0.90292 0.89063 0.90395 0.89096 0.88864 0.92050 0.94671 0.89509 0.90533 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 7.47 71.98 0.54 -5.24 16 2 C 0.03 1.56 0.57 -52.93 -0.03 1.53 16 3 C -0.12 -5.37 7.50 71.98 0.54 -4.83 16 4 C -0.51 -29.25 8.62 25.60 0.22 -29.03 16 5 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 6 C 0.01 0.86 5.30 84.65 0.45 1.30 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.17 16 8 Si 0.94 45.19 22.79 68.60 1.56 46.75 16 9 H -0.28 -13.26 7.10 99.48 0.71 -12.55 16 10 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 11 H -0.21 -8.84 4.59 99.48 0.46 -8.38 16 12 C 0.10 4.04 4.37 86.30 0.38 4.42 16 13 N -0.68 -21.59 5.71 -491.15 -2.80 -24.39 16 14 C 0.09 2.37 2.56 44.99 0.12 2.49 16 15 C -0.10 -2.68 5.59 30.65 0.17 -2.51 16 16 C 0.07 1.48 5.43 86.33 0.47 1.95 16 17 N -0.54 -11.35 4.58 -896.37 -4.11 -15.46 16 18 C 0.06 1.01 4.61 86.30 0.40 1.41 16 19 C 0.08 1.25 3.38 31.10 0.10 1.35 16 20 H 0.07 1.03 6.70 -2.39 -0.02 1.01 16 21 C -0.15 -1.53 6.63 31.61 0.21 -1.32 16 22 C -0.15 -1.43 7.09 31.61 0.22 -1.21 16 23 C 0.03 0.46 7.63 72.48 0.55 1.01 16 24 O -0.39 -8.14 11.35 -148.98 -1.69 -9.83 16 25 C 0.06 1.17 5.29 86.32 0.46 1.62 16 26 C -0.11 -2.37 5.36 30.64 0.16 -2.20 16 27 H 0.03 1.25 2.58 -2.39 -0.01 1.24 16 28 H 0.07 2.30 6.57 -2.39 -0.02 2.28 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 32 H 0.03 1.53 3.95 -2.39 -0.01 1.52 16 33 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.05 2.00 7.51 -2.38 -0.02 1.98 16 35 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 36 H 0.34 9.98 6.40 -89.69 -0.57 9.40 16 37 H 0.03 0.82 7.80 -2.39 -0.02 0.80 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.54 7.54 -2.39 -0.02 1.52 16 40 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 42 H 0.08 1.34 7.79 -2.38 -0.02 1.32 16 43 H 0.06 0.85 8.00 -2.38 -0.02 0.83 16 44 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 45 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.09 1.39 6.65 -2.39 -0.02 1.38 16 52 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.15 381.79 -1.74 -69.89 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.04 Total: 22.46 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.96 Total: -29.26 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -6.61 Total: -100.01 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.69 Total: -9.83 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.56 Total: 46.75 kcal Total: -68.15 -1.74 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594515075.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.006 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds