Wall clock time and date at job start Tue Mar 31 2020 10:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 H 1.09001 * 109.47447 * 55.93072 * 3 2 1 5 5 C 1.50700 * 109.46697 * 175.92981 * 3 2 1 6 6 H 1.08000 * 120.00073 * 120.00204 * 5 3 2 7 7 C 1.37884 * 120.00074 * 300.27071 * 5 3 2 8 8 N 1.31507 * 119.99889 * 179.72481 * 7 5 3 9 9 Si 1.86795 * 119.99865 * 359.73078 * 7 5 3 10 10 H 1.48503 * 109.47283 * 89.99664 * 9 7 5 11 11 H 1.48497 * 109.47168 * 209.99920 * 9 7 5 12 12 H 1.48504 * 109.47375 * 329.99719 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.92779 * 3 2 1 14 14 C 1.46894 * 110.99946 * 153.54090 * 13 3 2 15 15 C 1.53004 * 109.47187 * 184.35828 * 14 13 3 16 16 H 1.08992 * 109.49911 * 55.06434 * 15 14 13 17 17 C 1.53045 * 109.49295 * 295.00190 * 15 14 13 18 18 C 1.53041 * 109.53366 * 178.68428 * 17 15 14 19 19 C 1.53190 * 109.31270 * 61.36575 * 18 17 15 20 20 N 1.46927 * 108.77425 * 305.36097 * 19 18 17 21 21 C 1.34778 * 120.62778 * 233.61331 * 20 19 18 22 22 O 1.21281 * 119.99752 * 174.73028 * 21 20 19 23 23 C 1.50702 * 120.00190 * 354.72046 * 21 20 19 24 24 C 1.53000 * 109.46829 * 186.13184 * 23 21 20 25 25 C 1.53003 * 109.47153 * 306.12886 * 23 21 20 26 26 C 1.52999 * 109.47031 * 66.13245 * 23 21 20 27 27 C 1.46918 * 118.74090 * 53.61405 * 20 19 18 28 28 H 1.09002 * 109.46852 * 65.97767 * 1 2 3 29 29 H 1.08996 * 109.47091 * 185.98037 * 1 2 3 30 30 H 1.08997 * 109.46877 * 305.98014 * 1 2 3 31 31 H 1.08990 * 109.47001 * 239.99916 * 2 1 3 32 32 H 1.09002 * 109.46758 * 119.99652 * 2 1 3 33 33 H 0.96995 * 119.99919 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99745 * 29.59082 * 13 3 2 35 35 H 1.09007 * 109.47323 * 304.35724 * 14 13 3 36 36 H 1.09002 * 109.47103 * 64.35403 * 14 13 3 37 37 H 1.09003 * 109.46120 * 298.70089 * 17 15 14 38 38 H 1.08997 * 109.46155 * 58.67265 * 17 15 14 39 39 H 1.09006 * 109.49457 * 181.31627 * 18 17 15 40 40 H 1.08994 * 109.49877 * 301.40692 * 18 17 15 41 41 H 1.08994 * 109.58832 * 65.15264 * 19 18 17 42 42 H 1.09001 * 109.58408 * 185.57688 * 19 18 17 43 43 H 1.09001 * 109.47875 * 60.00210 * 24 23 21 44 44 H 1.09006 * 109.47021 * 180.02562 * 24 23 21 45 45 H 1.08998 * 109.47394 * 300.00018 * 24 23 21 46 46 H 1.09004 * 109.46745 * 66.99910 * 25 23 21 47 47 H 1.09003 * 109.46842 * 186.99765 * 25 23 21 48 48 H 1.08997 * 109.47131 * 306.99821 * 25 23 21 49 49 H 1.09000 * 109.47220 * 74.29621 * 26 23 21 50 50 H 1.09003 * 109.46889 * 194.29647 * 26 23 21 51 51 H 1.09004 * 109.46973 * 314.29469 * 26 23 21 52 52 H 1.09000 * 109.58887 * 186.60359 * 27 20 19 53 53 H 1.08998 * 109.58988 * 66.17289 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9770 0.8513 5 6 3.5436 1.4437 0.1008 6 1 4.1370 1.8924 -0.6820 7 6 4.1620 0.8668 1.1899 8 7 5.4743 0.8630 1.2753 9 14 3.1357 0.0906 2.5440 10 1 2.9040 -1.3422 2.2299 11 1 3.8560 0.2036 3.8376 12 1 1.8310 0.7933 2.6409 13 7 1.6323 2.1061 -1.2456 14 6 1.5226 3.5587 -1.0567 15 6 0.9928 4.2013 -2.3402 16 1 0.0521 3.7287 -2.6222 17 6 2.0150 4.0155 -3.4639 18 6 1.4719 4.6292 -4.7564 19 6 1.2484 6.1305 -4.5495 20 7 0.3810 6.3226 -3.3793 21 6 -0.7447 7.0580 -3.4723 22 8 -1.5013 7.1308 -2.5272 23 6 -1.0630 7.7901 -4.7505 24 6 -2.3026 8.6627 -4.5432 25 6 0.1232 8.6739 -5.1411 26 6 -1.3330 6.7770 -5.8647 27 6 0.7639 5.6979 -2.1059 28 1 -0.3633 0.4184 -0.9387 29 1 -0.3633 -1.0220 0.1071 30 1 -0.3633 0.6037 0.8316 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.9093 0.4569 2.0412 34 1 0.7675 1.7205 -1.5943 35 1 0.8365 3.7676 -0.2358 36 1 2.5046 3.9699 -0.8229 37 1 2.9479 4.5091 -3.1916 38 1 2.1981 2.9518 -3.6161 39 1 2.1902 4.4759 -5.5618 40 1 0.5265 4.1530 -5.0160 41 1 2.2060 6.6225 -4.3792 42 1 0.7697 6.5538 -5.4326 43 1 -2.1104 9.3845 -3.7494 44 1 -2.5332 9.1918 -5.4679 45 1 -3.1478 8.0331 -4.2649 46 1 0.9721 8.0449 -5.4092 47 1 -0.1519 9.2955 -5.9932 48 1 0.3945 9.3109 -4.2992 49 1 -2.3127 6.3235 -5.7140 50 1 -1.3117 7.2838 -6.8295 51 1 -0.5668 6.0019 -5.8445 52 1 -0.0345 5.8356 -1.3766 53 1 1.6820 6.1545 -1.7363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:23 Heat of formation + Delta-G solvation = -37.385531 kcal Electronic energy + Delta-G solvation = -27503.600154 eV Core-core repulsion = 23989.069643 eV Total energy + Delta-G solvation = -3514.530511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87447 -38.04812 -36.50116 -36.06519 -33.62898 -32.12372 -31.83343 -30.33697 -27.71769 -27.67462 -27.10764 -25.84638 -24.62801 -22.54737 -22.41187 -21.50928 -20.07168 -19.64098 -18.75892 -16.77918 -16.74851 -16.20895 -15.47144 -15.34798 -14.90234 -14.66746 -14.38181 -14.17597 -14.03132 -13.90053 -13.76708 -13.21329 -12.95048 -12.74060 -12.60359 -12.57810 -12.36225 -12.35075 -12.14717 -12.01065 -11.92232 -11.69496 -11.62430 -11.27352 -11.22332 -11.03048 -10.92027 -10.62876 -10.47026 -10.36103 -10.30004 -10.20438 -9.89124 -9.59741 -9.38567 -9.18685 -8.63217 -8.50651 -7.34838 -6.03077 -3.99466 2.55815 2.90833 3.26392 3.37654 3.39110 4.16372 4.41887 4.45940 4.55474 4.67946 4.79000 4.89446 4.97150 4.98948 5.17720 5.23816 5.25196 5.28028 5.33464 5.36083 5.47970 5.50704 5.52936 5.56728 5.65874 5.72948 5.74083 5.78787 5.81564 5.83888 5.88708 5.92414 5.95952 5.98639 6.02558 6.08291 6.34397 6.35897 6.45409 6.47552 6.59682 6.64180 6.67965 6.75989 6.83971 7.18947 7.35960 7.73770 7.98003 8.11862 8.28019 8.77395 9.09034 9.60562 11.10432 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002974 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.372798 B = 9413.536128 C = 9670.519117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.189 3.811 4 H 0.000 1.000 5 C -0.493 4.493 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.074 3.926 15 C -0.096 4.096 16 H 0.065 0.935 17 C -0.106 4.106 18 C -0.138 4.138 19 C 0.084 3.916 20 N -0.605 5.605 21 C 0.522 3.478 22 O -0.543 6.543 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.156 4.156 26 C -0.155 4.155 27 C 0.114 3.886 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.262 0.738 34 H 0.317 0.683 35 H 0.018 0.982 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.089 0.911 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 12.795 -15.808 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.081 3.919 4 H 0.018 0.982 5 C -0.532 4.532 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.302 5.302 14 C -0.057 4.057 15 C -0.115 4.115 16 H 0.084 0.916 17 C -0.144 4.144 18 C -0.176 4.176 19 C -0.038 4.038 20 N -0.337 5.337 21 C 0.310 3.690 22 O -0.420 6.420 23 C -0.089 4.089 24 C -0.183 4.183 25 C -0.213 4.213 26 C -0.212 4.212 27 C -0.008 4.008 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.036 0.964 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.107 0.893 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.656 12.819 -15.424 23.197 hybrid contribution -1.154 -0.568 1.428 1.922 sum -12.810 12.251 -13.996 22.585 Atomic orbital electron populations 1.21909 0.98208 1.00535 1.00748 1.22123 0.92933 1.00512 1.01744 1.19635 0.96782 0.89148 0.86375 0.98209 1.21031 0.88893 1.36738 1.06503 0.90131 1.24959 0.94729 0.96069 0.97762 1.69880 1.08064 1.45693 1.30473 0.86953 0.80505 0.79816 0.81483 1.20639 1.22549 1.19363 1.60529 1.35297 1.01882 1.32477 1.21827 1.00486 0.89898 0.93459 1.21519 0.99117 0.94026 0.96877 0.91624 1.21466 0.97750 1.02644 0.92512 1.22007 1.01670 0.94659 0.99288 1.22444 0.94867 0.97506 0.88966 1.48036 1.23513 1.50619 1.11565 1.20582 0.80251 0.78694 0.89443 1.90678 1.48022 1.63255 1.40087 1.20765 0.98045 0.96481 0.93625 1.21657 0.95962 0.99198 1.01517 1.22267 0.97152 0.99771 1.02154 1.22179 1.03044 0.98707 0.97319 1.21672 1.01131 0.92735 0.85276 0.93129 0.93642 0.93617 0.91340 0.92917 0.92773 0.86568 0.96400 0.90322 0.91803 0.89773 0.90767 0.91826 0.91296 0.87780 0.92130 0.92127 0.91862 0.90622 0.91473 0.92100 0.91849 0.91282 0.90780 0.89296 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.62 37.16 0.36 -2.34 16 2 C -0.14 -2.88 5.03 -26.73 -0.13 -3.02 16 3 C 0.19 4.38 1.63 -68.86 -0.11 4.27 16 4 H 0.00 0.01 6.77 -51.93 -0.35 -0.34 16 5 C -0.49 -13.73 9.30 -34.44 -0.32 -14.05 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 9 Si 0.88 22.02 24.40 -169.99 -4.15 17.88 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 N -0.67 -13.08 5.76 -107.95 -0.62 -13.71 16 14 C 0.07 1.29 4.92 -3.83 -0.02 1.27 16 15 C -0.10 -1.34 2.44 -90.49 -0.22 -1.56 16 16 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 17 C -0.11 -1.37 5.07 -26.69 -0.14 -1.50 16 18 C -0.14 -1.33 5.89 -26.61 -0.16 -1.49 16 19 C 0.08 0.75 3.94 -3.71 -0.01 0.73 16 20 N -0.60 -7.06 2.96 -172.78 -0.51 -7.58 16 21 C 0.52 6.64 6.47 -10.98 -0.07 6.56 16 22 O -0.54 -9.03 15.40 5.56 0.09 -8.95 16 23 C -0.09 -0.77 0.75 -155.66 -0.12 -0.88 16 24 C -0.13 -1.12 7.73 37.16 0.29 -0.83 16 25 C -0.16 -1.09 8.00 37.16 0.30 -0.79 16 26 C -0.16 -1.12 8.09 37.16 0.30 -0.82 16 27 C 0.11 1.54 5.73 -3.71 -0.02 1.51 16 28 H 0.05 0.77 6.60 -51.93 -0.34 0.43 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.05 1.21 3.20 -51.93 -0.17 1.05 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.32 5.55 6.42 -39.29 -0.25 5.30 16 35 H 0.02 0.32 7.95 -51.93 -0.41 -0.09 16 36 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.24 7.72 -51.93 -0.40 0.84 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 41 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.10 0.72 2.65 -51.93 -0.14 0.58 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.63 8.03 -51.93 -0.42 0.22 16 46 H 0.08 0.46 4.69 -51.93 -0.24 0.22 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 49 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 50 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 51 H 0.07 0.53 4.77 -51.93 -0.25 0.28 16 52 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 53 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -31.98 384.98 -8.48 -40.46 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -9.68 Total: 4.08 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.18 Total: -11.14 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.36 Total: -48.13 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.98 -8.48 -40.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.070 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds