Wall clock time and date at job start Tue Mar 31 2020 10:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46893 * 2 1 4 4 H 1.09001 * 109.47447 * 55.93072 * 3 2 1 5 5 C 1.50700 * 109.46697 * 175.92981 * 3 2 1 6 6 H 1.08000 * 120.00073 * 120.00204 * 5 3 2 7 7 C 1.37884 * 120.00074 * 300.27071 * 5 3 2 8 8 N 1.31507 * 119.99889 * 179.72481 * 7 5 3 9 9 Si 1.86795 * 119.99865 * 359.73078 * 7 5 3 10 10 H 1.48503 * 109.47283 * 89.99664 * 9 7 5 11 11 H 1.48497 * 109.47168 * 209.99920 * 9 7 5 12 12 H 1.48504 * 109.47375 * 329.99719 * 9 7 5 13 13 N 1.46901 * 109.47324 * 295.92779 * 3 2 1 14 14 C 1.46894 * 110.99946 * 153.54090 * 13 3 2 15 15 C 1.53004 * 109.47187 * 184.35828 * 14 13 3 16 16 H 1.08992 * 109.49911 * 55.06434 * 15 14 13 17 17 C 1.53045 * 109.49295 * 295.00190 * 15 14 13 18 18 C 1.53041 * 109.53366 * 178.68428 * 17 15 14 19 19 C 1.53190 * 109.31270 * 61.36575 * 18 17 15 20 20 N 1.46927 * 108.77425 * 305.36097 * 19 18 17 21 21 C 1.34778 * 120.62778 * 233.61331 * 20 19 18 22 22 O 1.21281 * 119.99752 * 174.73028 * 21 20 19 23 23 C 1.50702 * 120.00190 * 354.72046 * 21 20 19 24 24 C 1.53000 * 109.46829 * 186.13184 * 23 21 20 25 25 C 1.53003 * 109.47153 * 306.12886 * 23 21 20 26 26 C 1.52999 * 109.47031 * 66.13245 * 23 21 20 27 27 C 1.46918 * 118.74090 * 53.61405 * 20 19 18 28 28 H 1.09002 * 109.46852 * 65.97767 * 1 2 3 29 29 H 1.08996 * 109.47091 * 185.98037 * 1 2 3 30 30 H 1.08997 * 109.46877 * 305.98014 * 1 2 3 31 31 H 1.08990 * 109.47001 * 239.99916 * 2 1 3 32 32 H 1.09002 * 109.46758 * 119.99652 * 2 1 3 33 33 H 0.96995 * 119.99919 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99745 * 29.59082 * 13 3 2 35 35 H 1.09007 * 109.47323 * 304.35724 * 14 13 3 36 36 H 1.09002 * 109.47103 * 64.35403 * 14 13 3 37 37 H 1.09003 * 109.46120 * 298.70089 * 17 15 14 38 38 H 1.08997 * 109.46155 * 58.67265 * 17 15 14 39 39 H 1.09006 * 109.49457 * 181.31627 * 18 17 15 40 40 H 1.08994 * 109.49877 * 301.40692 * 18 17 15 41 41 H 1.08994 * 109.58832 * 65.15264 * 19 18 17 42 42 H 1.09001 * 109.58408 * 185.57688 * 19 18 17 43 43 H 1.09001 * 109.47875 * 60.00210 * 24 23 21 44 44 H 1.09006 * 109.47021 * 180.02562 * 24 23 21 45 45 H 1.08998 * 109.47394 * 300.00018 * 24 23 21 46 46 H 1.09004 * 109.46745 * 66.99910 * 25 23 21 47 47 H 1.09003 * 109.46842 * 186.99765 * 25 23 21 48 48 H 1.08997 * 109.47131 * 306.99821 * 25 23 21 49 49 H 1.09000 * 109.47220 * 74.29621 * 26 23 21 50 50 H 1.09003 * 109.46889 * 194.29647 * 26 23 21 51 51 H 1.09004 * 109.46973 * 314.29469 * 26 23 21 52 52 H 1.09000 * 109.58887 * 186.60359 * 27 20 19 53 53 H 1.08998 * 109.58988 * 66.17289 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9770 0.8513 5 6 3.5436 1.4437 0.1008 6 1 4.1370 1.8924 -0.6820 7 6 4.1620 0.8668 1.1899 8 7 5.4743 0.8630 1.2753 9 14 3.1357 0.0906 2.5440 10 1 2.9040 -1.3422 2.2299 11 1 3.8560 0.2036 3.8376 12 1 1.8310 0.7933 2.6409 13 7 1.6323 2.1061 -1.2456 14 6 1.5226 3.5587 -1.0567 15 6 0.9928 4.2013 -2.3402 16 1 0.0521 3.7287 -2.6222 17 6 2.0150 4.0155 -3.4639 18 6 1.4719 4.6292 -4.7564 19 6 1.2484 6.1305 -4.5495 20 7 0.3810 6.3226 -3.3793 21 6 -0.7447 7.0580 -3.4723 22 8 -1.5013 7.1308 -2.5272 23 6 -1.0630 7.7901 -4.7505 24 6 -2.3026 8.6627 -4.5432 25 6 0.1232 8.6739 -5.1411 26 6 -1.3330 6.7770 -5.8647 27 6 0.7639 5.6979 -2.1059 28 1 -0.3633 0.4184 -0.9387 29 1 -0.3633 -1.0220 0.1071 30 1 -0.3633 0.6037 0.8316 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.9093 0.4569 2.0412 34 1 0.7675 1.7205 -1.5943 35 1 0.8365 3.7676 -0.2358 36 1 2.5046 3.9699 -0.8229 37 1 2.9479 4.5091 -3.1916 38 1 2.1981 2.9518 -3.6161 39 1 2.1902 4.4759 -5.5618 40 1 0.5265 4.1530 -5.0160 41 1 2.2060 6.6225 -4.3792 42 1 0.7697 6.5538 -5.4326 43 1 -2.1104 9.3845 -3.7494 44 1 -2.5332 9.1918 -5.4679 45 1 -3.1478 8.0331 -4.2649 46 1 0.9721 8.0449 -5.4092 47 1 -0.1519 9.2955 -5.9932 48 1 0.3945 9.3109 -4.2992 49 1 -2.3127 6.3235 -5.7140 50 1 -1.3117 7.2838 -6.8295 51 1 -0.5668 6.0019 -5.8445 52 1 -0.0345 5.8356 -1.3766 53 1 1.6820 6.1545 -1.7363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:22 Heat of formation + Delta-G solvation = -58.596075 kcal Electronic energy + Delta-G solvation = -27504.519912 eV Core-core repulsion = 23989.069643 eV Total energy + Delta-G solvation = -3515.450270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80203 -39.27844 -37.98724 -36.94535 -35.00330 -34.04935 -32.98674 -31.64335 -29.18096 -28.24253 -28.16944 -26.82255 -26.01899 -24.22550 -23.34018 -22.59787 -21.73736 -20.93113 -19.64367 -18.85702 -17.70756 -17.16278 -16.94393 -16.56653 -16.12011 -16.10376 -15.53417 -15.43186 -15.18513 -14.98330 -14.82780 -14.60832 -14.27123 -14.01172 -13.79008 -13.69029 -13.57761 -13.22959 -13.19385 -13.08719 -12.95325 -12.83176 -12.68028 -12.56668 -12.39779 -12.22010 -12.03463 -11.97753 -11.90147 -11.78451 -11.61846 -11.40026 -11.24992 -11.21635 -11.12358 -10.68943 -10.51778 -9.64390 -9.04269 -8.27571 -6.28194 1.26602 1.32636 1.41859 1.59957 1.97123 2.30481 3.05284 3.37971 3.44172 3.73568 3.83041 3.91352 3.92678 4.05660 4.15874 4.21952 4.27034 4.28910 4.31467 4.38550 4.43103 4.51559 4.62414 4.66707 4.72027 4.75828 4.77720 4.79571 4.83184 4.86545 4.93471 4.94631 4.96619 5.03045 5.06394 5.07378 5.16042 5.17780 5.22182 5.24738 5.34636 5.36176 5.41755 5.45869 5.52883 5.57636 5.71361 6.07217 6.43379 6.49390 6.78204 6.94089 7.14859 7.36110 8.89700 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002974 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.372798 B = 9413.536128 C = 9670.519117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.011 1.011 5 C -0.495 4.495 6 H 0.036 0.964 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.301 1.301 12 H -0.254 1.254 13 N -0.672 5.672 14 C 0.078 3.922 15 C -0.080 4.080 16 H 0.068 0.932 17 C -0.104 4.104 18 C -0.130 4.130 19 C 0.082 3.918 20 N -0.603 5.603 21 C 0.513 3.487 22 O -0.592 6.592 23 C -0.082 4.082 24 C -0.125 4.125 25 C -0.154 4.154 26 C -0.153 4.153 27 C 0.119 3.881 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.333 0.667 35 H 0.014 0.986 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.097 0.903 51 H 0.077 0.923 52 H 0.068 0.932 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 12.952 -18.116 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.006 0.994 5 C -0.533 4.533 6 H 0.054 0.946 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.773 3.227 10 H -0.190 1.190 11 H -0.229 1.229 12 H -0.178 1.178 13 N -0.304 5.304 14 C -0.053 4.053 15 C -0.100 4.100 16 H 0.086 0.914 17 C -0.142 4.142 18 C -0.168 4.168 19 C -0.039 4.039 20 N -0.334 5.334 21 C 0.303 3.697 22 O -0.473 6.473 23 C -0.085 4.085 24 C -0.183 4.183 25 C -0.211 4.211 26 C -0.210 4.210 27 C -0.005 4.005 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.095 0.905 52 H 0.087 0.913 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.625 12.976 -17.780 25.887 hybrid contribution -0.479 -0.553 2.090 2.215 sum -14.104 12.423 -15.690 24.483 Atomic orbital electron populations 1.21839 0.94561 1.02379 1.01853 1.22007 0.96172 0.98179 1.00921 1.19422 0.93675 0.91036 0.87411 0.99368 1.21284 0.91408 1.35519 1.05124 0.94551 1.25767 0.95734 0.96882 1.00403 1.70033 1.10065 1.47458 1.31610 0.85911 0.79226 0.79682 0.77901 1.19005 1.22858 1.17818 1.60342 1.36448 1.02792 1.30793 1.21774 0.99049 0.88936 0.95507 1.21340 0.99233 0.94050 0.95355 0.91372 1.21409 0.97081 1.01702 0.93978 1.21963 1.02286 0.94743 0.97761 1.22720 0.95161 0.97279 0.88753 1.48124 1.23720 1.49964 1.11582 1.21439 0.79605 0.78327 0.90322 1.90652 1.49615 1.64903 1.42098 1.20838 0.98837 0.96824 0.92031 1.21667 0.95439 0.98767 1.02384 1.22284 0.96525 0.99693 1.02567 1.22197 1.02640 0.98422 0.97738 1.21451 1.00348 0.92460 0.86252 0.91191 0.91193 0.93665 0.91592 0.94356 0.92713 0.84750 0.96790 0.93091 0.92927 0.91633 0.88372 0.91386 0.90268 0.84947 0.93706 0.89215 0.93606 0.89436 0.88962 0.93418 0.92730 0.88373 0.90458 0.91322 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.62 71.98 0.69 -3.97 16 2 C -0.13 -5.55 5.03 30.60 0.15 -5.40 16 3 C 0.19 9.02 1.63 44.17 0.07 9.10 16 4 H -0.01 -0.54 6.77 -2.39 -0.02 -0.56 16 5 C -0.49 -28.55 9.30 25.60 0.24 -28.32 16 6 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 7 C 0.01 0.51 5.45 84.66 0.46 0.97 16 8 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 9 Si 0.95 45.85 24.40 68.60 1.67 47.52 16 10 H -0.26 -12.09 6.83 99.48 0.68 -11.41 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 13 N -0.67 -26.38 5.76 -495.44 -2.85 -29.23 16 14 C 0.08 2.80 4.92 86.31 0.43 3.23 16 15 C -0.08 -2.25 2.44 -10.71 -0.03 -2.27 16 16 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 17 C -0.10 -2.63 5.07 30.62 0.16 -2.48 16 18 C -0.13 -2.17 5.89 30.67 0.18 -1.98 16 19 C 0.08 1.23 3.94 86.36 0.34 1.57 16 20 N -0.60 -13.49 2.96 -818.93 -2.42 -15.91 16 21 C 0.51 12.71 6.47 87.66 0.57 13.28 16 22 O -0.59 -20.19 15.40 -3.03 -0.05 -20.24 16 23 C -0.08 -1.29 0.75 -52.93 -0.04 -1.33 16 24 C -0.12 -2.06 7.73 71.98 0.56 -1.50 16 25 C -0.15 -1.65 8.00 71.98 0.58 -1.08 16 26 C -0.15 -1.68 8.09 71.98 0.58 -1.10 16 27 C 0.12 3.23 5.73 86.37 0.49 3.73 16 28 H 0.07 1.91 6.60 -2.39 -0.02 1.89 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.04 1.69 3.20 -2.39 -0.01 1.68 16 33 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.33 11.28 6.42 -89.69 -0.58 10.71 16 35 H 0.01 0.51 7.95 -2.38 -0.02 0.50 16 36 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 39 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.07 1.12 7.92 -2.39 -0.02 1.10 16 41 H 0.08 1.09 8.10 -2.39 -0.02 1.08 16 42 H 0.13 1.29 2.65 -2.39 -0.01 1.28 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.04 0.90 8.03 -2.39 -0.02 0.88 16 46 H 0.09 0.72 4.69 -2.39 -0.01 0.71 16 47 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.05 0.66 8.13 -2.39 -0.02 0.64 16 49 H 0.05 0.72 8.06 -2.39 -0.02 0.70 16 50 H 0.10 0.55 8.06 -2.39 -0.02 0.53 16 51 H 0.08 0.80 4.77 -2.38 -0.01 0.79 16 52 H 0.07 2.17 7.00 -2.39 -0.02 2.15 16 53 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.97 384.98 2.29 -71.68 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.21 Total: 23.72 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 5.43 Total: -17.55 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.98 Total: -105.13 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -73.97 2.29 -71.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.085 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds