Wall clock time and date at job start Tue Mar 31 2020 09:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47430 * 240.00055 * 2 1 3 5 5 N 1.46901 * 109.47455 * 120.00196 * 2 1 3 6 6 C 1.47894 * 111.00198 * 64.60250 * 5 2 1 7 7 C 1.53994 * 107.06265 * 214.16046 * 6 5 2 8 8 C 1.54598 * 105.13803 * 1.22424 * 7 6 5 9 9 H 1.08999 * 110.72512 * 263.42084 * 8 7 6 10 10 C 1.52998 * 110.72155 * 140.31595 * 8 7 6 11 11 N 1.46497 * 109.47190 * 66.45646 * 10 8 7 12 12 C 1.34775 * 120.00124 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00213 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.47087 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46782 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.46769 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47075 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00182 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47399 * 89.99752 * 22 20 18 24 24 H 1.48501 * 109.46918 * 209.99599 * 22 20 18 25 25 H 1.48493 * 109.47370 * 329.99255 * 22 20 18 26 26 C 1.48536 * 110.99718 * 307.21026 * 5 2 1 27 27 H 1.08999 * 109.46992 * 307.06538 * 1 2 3 28 28 H 1.08994 * 109.47099 * 67.07119 * 1 2 3 29 29 H 1.09009 * 109.46798 * 187.07056 * 1 2 3 30 30 H 1.09002 * 109.47295 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46933 * 300.00100 * 3 2 1 32 32 H 1.09003 * 109.46825 * 60.00050 * 3 2 1 33 33 H 1.08996 * 109.47255 * 299.99979 * 4 2 1 34 34 H 1.09000 * 109.46534 * 59.99810 * 4 2 1 35 35 H 1.09002 * 109.47304 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.92132 * 333.51309 * 6 5 2 37 37 H 1.09002 * 109.91595 * 94.60875 * 6 5 2 38 38 H 1.09000 * 110.31084 * 120.14135 * 7 6 5 39 39 H 1.09001 * 110.30584 * 242.30892 * 7 6 5 40 40 H 1.09006 * 109.46685 * 186.45113 * 10 8 7 41 41 H 1.08993 * 109.47309 * 306.45355 * 10 8 7 42 42 H 0.96998 * 119.99964 * 359.97438 * 11 10 8 43 43 H 1.09003 * 109.46727 * 300.00324 * 14 12 11 44 44 H 1.09000 * 109.46871 * 59.99878 * 14 12 11 45 45 H 1.08996 * 109.46709 * 300.00025 * 15 14 12 46 46 H 1.09000 * 109.46577 * 60.00050 * 15 14 12 47 47 H 1.08993 * 109.47716 * 300.00243 * 16 15 14 48 48 H 1.09007 * 109.47099 * 60.00127 * 16 15 14 49 49 H 1.08994 * 109.47561 * 300.00152 * 17 16 15 50 50 H 1.09000 * 109.47290 * 60.00614 * 17 16 15 51 51 H 0.97005 * 119.99910 * 180.02562 * 21 20 18 52 52 H 1.09004 * 110.66598 * 278.15175 * 26 5 2 53 53 H 1.09005 * 110.67048 * 41.28141 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.6381 -2.1213 1.1795 7 6 1.3732 -2.5386 2.6379 8 6 1.5970 -1.2561 3.4718 9 1 2.6050 -1.2364 3.8860 10 6 0.5539 -1.1457 4.5856 11 7 0.7582 -2.2253 5.5547 12 6 -0.0491 -2.3281 6.6290 13 8 -0.9450 -1.5273 6.7933 14 6 0.1606 -3.4390 7.6256 15 6 -0.8825 -3.3285 8.7395 16 6 -0.6699 -4.4567 9.7509 17 6 -1.7125 -4.3458 10.8651 18 6 -1.5028 -5.4566 11.8617 19 1 -0.7058 -6.1705 11.7147 20 6 -2.3290 -5.5622 12.9604 21 7 -3.2997 -4.6932 13.1391 22 14 -2.0685 -6.9387 14.1960 23 1 -1.1319 -6.4831 15.2545 24 1 -3.3698 -7.3049 14.8106 25 1 -1.4968 -8.1224 13.5052 26 6 1.4065 -0.1268 2.4283 27 1 -0.3633 0.6194 0.8200 28 1 -0.3633 0.4003 -0.9464 29 1 -0.3633 -1.0200 0.1265 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1301 -0.7208 -1.2495 36 1 0.7346 -2.2561 0.5848 37 1 2.4499 -2.7166 0.7614 38 1 0.3473 -2.8890 2.7508 39 1 2.0748 -3.3152 2.9425 40 1 0.6579 -0.1833 5.0867 41 1 -0.4450 -1.2263 4.1572 42 1 1.4744 -2.8660 5.4231 43 1 0.0559 -4.4013 7.1243 44 1 1.1598 -3.3591 8.0537 45 1 -0.7781 -2.3662 9.2407 46 1 -1.8814 -3.4086 8.3109 47 1 -0.7743 -5.4187 9.2494 48 1 0.3293 -4.3770 10.1794 49 1 -1.6076 -3.3838 11.3665 50 1 -2.7117 -4.4253 10.4369 51 1 -3.8808 -4.7672 13.9123 52 1 1.9312 0.7767 2.7392 53 1 0.3473 0.0771 2.2710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597861910.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:11 Heat of formation + Delta-G solvation = -66.493119 kcal Electronic energy + Delta-G solvation = -25419.851063 eV Core-core repulsion = 21904.058352 eV Total energy + Delta-G solvation = -3515.792711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53503 -39.51323 -36.54995 -34.88370 -34.15785 -32.60027 -30.79512 -29.86015 -29.48266 -27.85479 -27.57445 -26.07706 -24.65374 -22.59590 -22.19994 -20.69657 -20.09661 -19.90568 -19.10749 -17.03777 -16.70976 -16.33527 -16.12706 -15.72932 -15.64033 -14.80930 -14.67537 -14.42613 -14.41079 -14.27725 -13.70767 -13.45616 -13.31270 -13.05021 -12.61259 -12.57975 -12.50377 -12.15298 -12.08960 -11.99258 -11.77660 -11.66841 -11.61949 -11.54303 -11.43885 -11.23737 -11.08020 -10.96344 -10.84315 -10.51421 -10.48457 -10.38396 -9.78509 -9.58759 -9.19613 -9.14971 -8.95862 -8.77471 -8.28640 -5.93425 -3.95881 2.76342 3.09371 3.35268 3.41210 3.44451 3.48471 4.13170 4.19797 4.35620 4.44724 4.49720 4.50535 4.68802 4.78875 4.91104 4.93691 5.05628 5.08364 5.14733 5.18504 5.24255 5.30985 5.35958 5.37706 5.39902 5.40483 5.42122 5.43531 5.46011 5.49960 5.60673 5.67429 5.69094 5.74137 5.87475 5.90801 5.92015 6.16980 6.32136 6.34909 6.47591 6.57864 6.67202 6.87002 7.05047 7.22689 7.46222 7.76281 7.92541 8.08176 8.29803 8.50009 9.11853 9.67635 11.17864 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.001639 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.683383 B =17083.687436 C =17318.918142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.091 3.909 3 C -0.136 4.136 4 C -0.140 4.140 5 N -0.504 5.504 6 C 0.032 3.968 7 C -0.129 4.129 8 C -0.103 4.103 9 H 0.090 0.910 10 C 0.128 3.872 11 N -0.737 5.737 12 C 0.511 3.489 13 O -0.536 6.536 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.260 0.740 52 H 0.084 0.916 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 9.214 -31.209 35.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.002 3.998 3 C -0.194 4.194 4 C -0.198 4.198 5 N -0.228 5.228 6 C -0.096 4.096 7 C -0.167 4.167 8 C -0.122 4.122 9 H 0.108 0.892 10 C 0.004 3.996 11 N -0.391 5.391 12 C 0.298 3.702 13 O -0.412 6.412 14 C -0.178 4.178 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.091 4.091 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.069 0.931 52 H 0.103 0.897 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.173 9.916 -30.991 35.104 hybrid contribution -0.474 -1.134 0.580 1.359 sum 12.698 8.782 -30.410 34.105 Atomic orbital electron populations 1.22541 0.96861 1.02325 1.02627 1.21218 0.92594 0.95042 0.90974 1.21819 1.01867 0.94016 1.01698 1.21893 1.01907 1.00083 0.95898 1.65028 1.54384 1.02071 1.01359 1.22911 1.00022 0.89929 0.96728 1.22512 1.02320 0.97582 0.94265 1.22316 0.99892 0.95343 0.94658 0.89171 1.21267 0.98243 0.91107 0.88990 1.46063 1.35651 1.32232 1.25140 1.21108 0.80998 0.86510 0.81537 1.90708 1.32021 1.43162 1.75333 1.21792 1.02763 0.96833 0.96462 1.21448 0.97420 1.00573 0.94688 1.21649 1.00639 0.95848 0.96660 1.19101 0.93588 0.97019 0.92082 1.21293 1.14761 1.12537 1.07293 0.92753 1.25043 0.95277 0.96189 0.98067 1.69977 1.18447 1.35986 1.29033 0.86608 0.77415 0.82496 0.81542 1.20717 1.21269 1.19941 1.23282 0.98844 0.97599 0.89401 0.91906 0.91893 0.92177 0.91778 0.92288 0.92585 0.92568 0.92202 0.91768 0.93120 0.90399 0.91052 0.90775 0.91451 0.91714 0.76660 0.89204 0.89161 0.91822 0.91857 0.93495 0.93482 0.96581 0.96588 0.93069 0.89741 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 7.60 37.16 0.28 -0.80 16 2 C 0.09 0.55 0.69 -131.60 -0.09 0.46 16 3 C -0.14 -0.76 8.48 37.16 0.32 -0.45 16 4 C -0.14 -0.75 8.27 37.16 0.31 -0.44 16 5 N -0.50 -3.40 5.09 -214.85 -1.09 -4.50 16 6 C 0.03 0.20 5.10 -2.76 -0.01 0.18 16 7 C -0.13 -0.79 6.20 -25.37 -0.16 -0.95 16 8 C -0.10 -0.68 3.13 -88.76 -0.28 -0.96 16 9 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 10 C 0.13 1.15 5.00 -4.04 -0.02 1.13 16 11 N -0.74 -7.19 5.40 -60.30 -0.33 -7.51 16 12 C 0.51 7.11 7.83 -10.98 -0.09 7.03 16 13 O -0.54 -9.89 15.98 5.55 0.09 -9.80 16 14 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 15 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 22 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.04 0.25 4.92 -1.90 -0.01 0.24 16 27 H 0.06 0.39 6.36 -51.93 -0.33 0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.38 6.05 -51.92 -0.31 0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 7.15 -51.93 -0.37 -0.05 16 33 H 0.06 0.30 6.78 -51.93 -0.35 -0.05 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.32 5.28 -51.93 -0.27 0.04 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.49 7.80 -51.93 -0.41 0.08 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.40 2.79 8.33 -40.82 -0.34 2.45 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 46 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 52 H 0.08 0.56 7.72 -51.93 -0.40 0.16 16 53 H 0.06 0.40 5.46 -51.93 -0.28 0.12 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -33.67 406.12 -10.43 -44.09 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -10.21 Total: -3.91 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.72 Total: -14.56 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.68 Total: -38.96 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.67 -10.43 -44.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597861910.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.400 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds