Wall clock time and date at job start Tue Mar 31 2020 09:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47430 * 240.00055 * 2 1 3 5 5 N 1.46901 * 109.47455 * 120.00196 * 2 1 3 6 6 C 1.47894 * 111.00198 * 64.60250 * 5 2 1 7 7 C 1.53994 * 107.06265 * 214.16046 * 6 5 2 8 8 C 1.54598 * 105.13803 * 1.22424 * 7 6 5 9 9 H 1.08999 * 110.72512 * 263.42084 * 8 7 6 10 10 C 1.52998 * 110.72155 * 140.31595 * 8 7 6 11 11 N 1.46497 * 109.47190 * 66.45646 * 10 8 7 12 12 C 1.34775 * 120.00124 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00213 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.47087 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46782 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.46769 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47075 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99947 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00182 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47399 * 89.99752 * 22 20 18 24 24 H 1.48501 * 109.46918 * 209.99599 * 22 20 18 25 25 H 1.48493 * 109.47370 * 329.99255 * 22 20 18 26 26 C 1.48536 * 110.99718 * 307.21026 * 5 2 1 27 27 H 1.08999 * 109.46992 * 307.06538 * 1 2 3 28 28 H 1.08994 * 109.47099 * 67.07119 * 1 2 3 29 29 H 1.09009 * 109.46798 * 187.07056 * 1 2 3 30 30 H 1.09002 * 109.47295 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46933 * 300.00100 * 3 2 1 32 32 H 1.09003 * 109.46825 * 60.00050 * 3 2 1 33 33 H 1.08996 * 109.47255 * 299.99979 * 4 2 1 34 34 H 1.09000 * 109.46534 * 59.99810 * 4 2 1 35 35 H 1.09002 * 109.47304 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.92132 * 333.51309 * 6 5 2 37 37 H 1.09002 * 109.91595 * 94.60875 * 6 5 2 38 38 H 1.09000 * 110.31084 * 120.14135 * 7 6 5 39 39 H 1.09001 * 110.30584 * 242.30892 * 7 6 5 40 40 H 1.09006 * 109.46685 * 186.45113 * 10 8 7 41 41 H 1.08993 * 109.47309 * 306.45355 * 10 8 7 42 42 H 0.96998 * 119.99964 * 359.97438 * 11 10 8 43 43 H 1.09003 * 109.46727 * 300.00324 * 14 12 11 44 44 H 1.09000 * 109.46871 * 59.99878 * 14 12 11 45 45 H 1.08996 * 109.46709 * 300.00025 * 15 14 12 46 46 H 1.09000 * 109.46577 * 60.00050 * 15 14 12 47 47 H 1.08993 * 109.47716 * 300.00243 * 16 15 14 48 48 H 1.09007 * 109.47099 * 60.00127 * 16 15 14 49 49 H 1.08994 * 109.47561 * 300.00152 * 17 16 15 50 50 H 1.09000 * 109.47290 * 60.00614 * 17 16 15 51 51 H 0.97005 * 119.99910 * 180.02562 * 21 20 18 52 52 H 1.09004 * 110.66598 * 278.15175 * 26 5 2 53 53 H 1.09005 * 110.67048 * 41.28141 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.6381 -2.1213 1.1795 7 6 1.3732 -2.5386 2.6379 8 6 1.5970 -1.2561 3.4718 9 1 2.6050 -1.2364 3.8860 10 6 0.5539 -1.1457 4.5856 11 7 0.7582 -2.2253 5.5547 12 6 -0.0491 -2.3281 6.6290 13 8 -0.9450 -1.5273 6.7933 14 6 0.1606 -3.4390 7.6256 15 6 -0.8825 -3.3285 8.7395 16 6 -0.6699 -4.4567 9.7509 17 6 -1.7125 -4.3458 10.8651 18 6 -1.5028 -5.4566 11.8617 19 1 -0.7058 -6.1705 11.7147 20 6 -2.3290 -5.5622 12.9604 21 7 -3.2997 -4.6932 13.1391 22 14 -2.0685 -6.9387 14.1960 23 1 -1.1319 -6.4831 15.2545 24 1 -3.3698 -7.3049 14.8106 25 1 -1.4968 -8.1224 13.5052 26 6 1.4065 -0.1268 2.4283 27 1 -0.3633 0.6194 0.8200 28 1 -0.3633 0.4003 -0.9464 29 1 -0.3633 -1.0200 0.1265 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2073 -2.1392 35 1 3.1301 -0.7208 -1.2495 36 1 0.7346 -2.2561 0.5848 37 1 2.4499 -2.7166 0.7614 38 1 0.3473 -2.8890 2.7508 39 1 2.0748 -3.3152 2.9425 40 1 0.6579 -0.1833 5.0867 41 1 -0.4450 -1.2263 4.1572 42 1 1.4744 -2.8660 5.4231 43 1 0.0559 -4.4013 7.1243 44 1 1.1598 -3.3591 8.0537 45 1 -0.7781 -2.3662 9.2407 46 1 -1.8814 -3.4086 8.3109 47 1 -0.7743 -5.4187 9.2494 48 1 0.3293 -4.3770 10.1794 49 1 -1.6076 -3.3838 11.3665 50 1 -2.7117 -4.4253 10.4369 51 1 -3.8808 -4.7672 13.9123 52 1 1.9312 0.7767 2.7392 53 1 0.3473 0.0771 2.2710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597861910.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:11 Heat of formation + Delta-G solvation = -88.358060 kcal Electronic energy + Delta-G solvation = -25420.799198 eV Core-core repulsion = 21904.058352 eV Total energy + Delta-G solvation = -3516.740846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16603 -40.49522 -37.27785 -36.56655 -34.98658 -34.59240 -31.88700 -30.85403 -30.31495 -28.31682 -28.15915 -27.52389 -25.80145 -23.86455 -23.11838 -21.77093 -21.41413 -20.92841 -19.60494 -18.41618 -17.93902 -17.40382 -16.98776 -16.84735 -16.57827 -16.38896 -15.71373 -15.25571 -15.15528 -14.87370 -14.72260 -14.53096 -14.43894 -13.96279 -13.69436 -13.58152 -13.52025 -13.25289 -13.06375 -12.95589 -12.80628 -12.58841 -12.54630 -12.34406 -12.23088 -12.14757 -12.11927 -12.06033 -12.05460 -11.77622 -11.56402 -11.36846 -11.35757 -11.34062 -11.15498 -10.74539 -10.54458 -10.09149 -9.28525 -8.18111 -6.30406 1.40829 1.43196 1.54254 1.67462 2.20098 2.42654 2.96983 3.14546 3.60957 3.62538 3.81599 3.91476 3.95663 4.02254 4.08975 4.16515 4.22854 4.29037 4.36891 4.41924 4.60693 4.61825 4.66731 4.69812 4.71047 4.72206 4.79402 4.86421 4.86972 4.89739 4.91446 4.95045 4.98662 5.00962 5.06850 5.14781 5.20643 5.22303 5.26550 5.34387 5.35793 5.39085 5.44791 5.48683 5.58385 5.78938 5.88711 5.97705 6.18084 6.25906 6.58340 6.88072 7.30215 7.39230 8.94059 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.001639 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.683383 B =17083.687436 C =17318.918142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 C -0.134 4.134 4 C -0.137 4.137 5 N -0.510 5.510 6 C 0.032 3.968 7 C -0.125 4.125 8 C -0.090 4.090 9 H 0.098 0.902 10 C 0.131 3.869 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.591 6.591 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.096 4.096 17 C 0.017 3.983 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.259 1.259 26 C 0.037 3.963 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.417 0.583 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.061 0.939 49 H -0.016 1.016 50 H -0.016 1.016 51 H 0.262 0.738 52 H 0.085 0.915 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.683 7.528 -32.202 36.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.001 4.001 3 C -0.192 4.192 4 C -0.195 4.195 5 N -0.235 5.235 6 C -0.096 4.096 7 C -0.164 4.164 8 C -0.110 4.110 9 H 0.117 0.883 10 C 0.007 3.993 11 N -0.368 5.368 12 C 0.298 3.702 13 O -0.471 6.471 14 C -0.167 4.167 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.091 4.091 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.255 0.745 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.071 0.929 52 H 0.103 0.897 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.501 8.208 -32.028 36.516 hybrid contribution -1.202 -0.551 0.841 1.568 sum 14.299 7.657 -31.186 35.152 Atomic orbital electron populations 1.22505 0.96860 1.01920 1.02728 1.21287 0.92588 0.95269 0.91000 1.21803 1.01575 0.93876 1.01941 1.21866 1.01633 1.00098 0.95860 1.65047 1.54492 1.02394 1.01518 1.22922 1.00127 0.89717 0.96790 1.22500 1.02290 0.97497 0.94065 1.22200 0.99245 0.95782 0.93756 0.88341 1.21265 0.98513 0.90302 0.89242 1.45854 1.34907 1.32313 1.23760 1.21205 0.80674 0.85990 0.82337 1.90699 1.34524 1.45188 1.76733 1.21671 1.02190 0.97989 0.94897 1.21247 0.98244 0.98387 0.95596 1.21449 0.99047 0.97519 0.95303 1.19070 0.94057 0.95119 0.93737 1.21769 1.15158 1.13179 1.07965 0.91529 1.26098 0.94772 0.99053 1.00477 1.70137 1.19540 1.38168 1.29943 0.85370 0.77532 0.79100 0.78563 1.19711 1.20956 1.18311 1.23260 0.98604 0.97673 0.89592 0.92529 0.91240 0.92632 0.92145 0.91439 0.92997 0.92578 0.91385 0.92105 0.93264 0.89971 0.91758 0.89360 0.92522 0.92984 0.74531 0.86311 0.86294 0.93961 0.93983 0.92037 0.92024 0.99728 0.99727 0.92884 0.89704 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 7.60 71.98 0.55 -1.45 16 2 C 0.09 0.96 0.69 3.53 0.00 0.96 16 3 C -0.13 -1.38 8.48 71.98 0.61 -0.77 16 4 C -0.14 -1.28 8.27 71.98 0.60 -0.69 16 5 N -0.51 -6.24 5.09 -833.65 -4.24 -10.49 16 6 C 0.03 0.35 5.10 86.45 0.44 0.79 16 7 C -0.13 -1.29 6.20 31.47 0.20 -1.09 16 8 C -0.09 -1.05 3.13 -9.59 -0.03 -1.08 16 9 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 10 C 0.13 2.25 5.00 86.38 0.43 2.68 16 11 N -0.72 -12.59 5.40 -463.07 -2.50 -15.09 16 12 C 0.51 13.66 7.83 87.66 0.69 14.35 16 13 O -0.59 -22.26 15.98 -3.04 -0.05 -22.31 16 14 C -0.13 -3.12 5.70 29.85 0.17 -2.95 16 15 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 16 C -0.10 -3.93 5.15 30.59 0.16 -3.78 16 17 C 0.02 0.96 4.97 29.85 0.15 1.11 16 18 C -0.54 -31.71 9.11 25.60 0.23 -31.47 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 20 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 21 N -0.94 -59.34 13.29 21.45 0.28 -59.05 16 22 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.04 0.46 4.92 86.65 0.43 0.89 16 27 H 0.06 0.69 6.36 -2.39 -0.02 0.67 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 6.05 -2.38 -0.01 0.64 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 7.15 -2.39 -0.02 0.55 16 33 H 0.06 0.52 6.78 -2.39 -0.02 0.51 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.56 5.28 -2.38 -0.01 0.54 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.78 7.80 -2.39 -0.02 0.76 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 42 H 0.42 4.45 8.33 -92.71 -0.77 3.68 16 43 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 46 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 47 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 49 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 50 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 51 H 0.26 15.56 8.31 -92.70 -0.77 14.78 16 52 H 0.08 1.05 7.72 -2.38 -0.02 1.03 16 53 H 0.05 0.72 5.46 -2.38 -0.01 0.70 16 Total: -1.00 -75.16 406.12 0.81 -74.34 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.08 Total: 11.40 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 5.22 Total: -25.82 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -6.46 Total: -84.63 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.16 0.81 -74.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597861910.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.014 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds