Wall clock time and date at job start Tue Mar 31 2020 09:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 H 1.09006 * 109.46933 * 304.37954 * 3 2 1 5 5 N 1.46901 * 109.47423 * 64.37851 * 3 2 1 6 6 C 1.46893 * 111.00142 * 218.82946 * 5 3 2 7 7 C 1.50700 * 109.47238 * 173.79811 * 6 5 3 8 8 O 1.21282 * 119.99720 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00436 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99729 * 0.02562 * 9 7 6 11 11 C 1.52997 * 109.47107 * 90.00037 * 10 9 7 12 12 C 1.46501 * 120.00488 * 179.97438 * 9 7 6 13 13 C 1.50706 * 109.46826 * 89.99938 * 12 9 7 14 14 H 1.07995 * 119.99998 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99661 * 180.02562 * 13 12 9 16 16 N 1.31517 * 120.00131 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47093 * 60.00298 * 17 15 13 19 19 H 1.48503 * 109.46822 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47196 * 299.99797 * 17 15 13 21 21 C 1.52997 * 109.47426 * 184.38659 * 3 2 1 22 22 C 1.53009 * 109.46531 * 297.50516 * 21 3 2 23 23 C 1.52998 * 109.46910 * 180.02562 * 22 21 3 24 24 C 1.52999 * 109.47548 * 59.99807 * 23 22 21 25 25 C 1.53002 * 109.46989 * 299.99836 * 24 23 22 26 26 C 1.52999 * 109.47418 * 177.50635 * 21 3 2 27 27 H 1.08997 * 109.46797 * 301.57941 * 1 2 3 28 28 H 1.08995 * 109.47253 * 61.58531 * 1 2 3 29 29 H 1.09008 * 109.47062 * 181.58415 * 1 2 3 30 30 H 1.08997 * 109.47194 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.47300 * 119.99856 * 2 1 3 32 32 H 1.00903 * 110.99797 * 94.87075 * 5 3 2 33 33 H 1.09003 * 109.47446 * 293.79325 * 6 5 3 34 34 H 1.08996 * 109.47418 * 53.79709 * 6 5 3 35 35 H 1.09009 * 109.47208 * 209.99968 * 10 9 7 36 36 H 1.09000 * 109.47230 * 329.99547 * 10 9 7 37 37 H 1.08997 * 109.47725 * 60.00374 * 11 10 9 38 38 H 1.09011 * 109.47172 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47343 * 299.99440 * 11 10 9 40 40 H 1.08999 * 109.47317 * 209.99805 * 12 9 7 41 41 H 1.09000 * 109.46945 * 330.00265 * 12 9 7 42 42 H 0.97006 * 119.99718 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47680 * 57.50040 * 21 3 2 44 44 H 1.09005 * 109.46938 * 299.99639 * 22 21 3 45 45 H 1.08991 * 109.47498 * 59.99980 * 22 21 3 46 46 H 1.09008 * 109.47358 * 299.99714 * 23 22 21 47 47 H 1.08998 * 109.47567 * 179.97438 * 23 22 21 48 48 H 1.09006 * 109.47175 * 180.02562 * 24 23 22 49 49 H 1.09000 * 109.47180 * 59.99643 * 24 23 22 50 50 H 1.08997 * 109.47476 * 299.99818 * 25 24 23 51 51 H 1.09004 * 109.47194 * 179.97438 * 25 24 23 52 52 H 1.08994 * 109.47254 * 299.99987 * 26 21 3 53 53 H 1.09001 * 109.47140 * 59.99886 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9785 -0.8482 5 7 1.6386 2.1038 1.2488 6 6 1.2448 3.4975 1.0034 7 6 0.6971 4.0959 2.2734 8 8 0.6401 3.4269 3.2835 9 7 0.2708 5.3743 2.2869 10 6 0.3392 6.1822 1.0667 11 6 -0.9622 6.0253 0.2776 12 6 -0.2622 5.9559 3.5215 13 6 0.8601 6.5867 4.3049 14 1 1.8692 6.5577 3.9213 15 6 0.5985 7.2008 5.5112 16 7 -0.6304 7.2356 5.9785 17 14 1.9895 7.9833 6.4820 18 1 2.6232 9.0502 5.6664 19 1 1.4494 8.5716 7.7340 20 1 3.0015 6.9497 6.8177 21 6 3.5660 1.4439 -0.1103 22 6 4.1662 0.7457 1.1117 23 6 5.6923 0.7477 1.0018 24 6 6.1973 2.1906 0.9395 25 6 5.5972 2.8887 -0.2825 26 6 4.0715 2.8866 -0.1729 27 1 -0.3633 0.5382 0.8755 28 1 -0.3633 0.4890 -0.9038 29 1 -0.3633 -1.0273 0.0284 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.3738 2.0517 1.9380 33 1 2.1142 4.0690 0.6781 34 1 0.4794 3.5277 0.2280 35 1 0.4791 7.2302 1.3321 36 1 1.1773 5.8472 0.4557 37 1 -1.8003 6.3604 0.8885 38 1 -0.9114 6.6268 -0.6301 39 1 -1.1021 4.9774 0.0121 40 1 -1.0044 6.7150 3.2747 41 1 -0.7281 5.1732 4.1202 42 1 -0.8143 7.6674 6.8275 43 1 3.8655 0.9144 -1.0148 44 1 3.8668 1.2753 2.0162 45 1 3.8062 -0.2820 1.1564 46 1 5.9921 0.2184 0.0973 47 1 6.1200 0.2508 1.8726 48 1 7.2845 2.1919 0.8607 49 1 5.8975 2.7199 1.8440 50 1 5.8969 2.3595 -1.1870 51 1 5.9566 3.9168 -0.3267 52 1 3.6439 3.3840 -1.0434 53 1 3.7721 3.4161 0.7316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611433727.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:15 Heat of formation + Delta-G solvation = -65.953454 kcal Electronic energy + Delta-G solvation = -27736.538381 eV Core-core repulsion = 24220.769071 eV Total energy + Delta-G solvation = -3515.769309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93461 -38.70618 -36.05242 -35.13919 -32.91837 -32.38876 -30.86825 -30.74503 -30.02872 -27.79950 -26.20205 -24.62531 -23.12888 -22.96884 -22.15252 -21.94742 -20.47159 -19.43317 -18.24328 -16.47844 -16.29609 -16.08405 -15.72339 -15.21967 -15.03407 -14.43248 -14.37918 -14.26356 -14.09675 -13.65075 -13.29406 -13.13399 -13.05690 -12.93847 -12.71208 -12.37756 -12.31069 -11.95496 -11.91699 -11.84697 -11.47135 -11.39914 -11.24675 -11.15989 -11.02362 -10.93183 -10.87673 -10.70620 -10.69423 -10.56849 -10.48546 -10.15762 -10.09345 -10.03997 -9.60900 -8.81301 -8.40134 -8.08905 -7.58111 -6.00909 -4.05551 3.32865 3.37534 3.39718 3.55064 3.83922 4.40464 4.44955 4.49399 4.55411 4.63140 4.94066 5.02566 5.10736 5.17200 5.22744 5.27071 5.32939 5.34031 5.37258 5.38410 5.41471 5.50028 5.52408 5.55795 5.61772 5.67954 5.72049 5.80926 5.84788 5.86565 5.94188 6.00107 6.02326 6.03776 6.06363 6.10191 6.12707 6.19136 6.26497 6.30902 6.34591 6.51635 6.55125 7.02762 7.23553 7.50827 7.58188 7.62662 7.96222 8.28091 8.52190 8.94772 9.21501 9.59556 11.07027 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004037 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.518138 B = 6933.545117 C = 8009.626428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.091 3.909 4 H 0.071 0.929 5 N -0.663 5.663 6 C 0.037 3.963 7 C 0.504 3.496 8 O -0.528 6.528 9 N -0.600 5.600 10 C 0.108 3.892 11 C -0.169 4.169 12 C 0.248 3.752 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.116 4.116 26 C -0.122 4.122 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.350 0.650 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.061 0.939 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.651 -10.509 -17.497 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.020 4.020 4 H 0.089 0.911 5 N -0.297 5.297 6 C -0.096 4.096 7 C 0.289 3.711 8 O -0.404 6.404 9 N -0.334 5.334 10 C -0.017 4.017 11 C -0.227 4.227 12 C 0.129 3.871 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.131 4.131 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.154 4.154 26 C -0.160 4.160 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.173 0.827 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.079 0.921 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.848 -11.017 -16.781 21.554 hybrid contribution 1.592 1.080 0.334 1.952 sum 9.439 -9.937 -16.447 21.409 Atomic orbital electron populations 1.21670 0.95537 1.00716 1.02386 1.21507 0.96511 0.95387 1.01182 1.21684 0.92130 0.95773 0.92365 0.91099 1.60233 1.45900 1.13991 1.09615 1.22093 1.00258 0.89941 0.97271 1.20251 0.79200 0.82011 0.89588 1.90668 1.54672 1.60191 1.34829 1.48249 1.62254 1.10829 1.12026 1.21379 0.96534 0.97409 0.86361 1.22224 0.99284 1.01361 0.99865 1.19222 0.94187 0.93774 0.79945 1.21395 0.94474 1.35613 1.04884 0.92683 1.24925 0.95672 0.96263 0.97195 1.69927 1.18851 1.44167 1.20448 0.86588 0.82293 0.79396 0.79297 1.20316 1.21180 1.20240 1.21810 0.95992 0.96211 0.99106 1.21642 0.94978 1.00879 0.98106 1.21510 0.95829 0.96609 1.01483 1.21560 0.99661 0.96109 0.98677 1.21487 0.95406 1.00339 0.98139 1.21744 0.95745 0.96479 1.02017 0.90945 0.93816 0.93772 0.92621 0.91625 0.82692 0.92697 0.89144 0.90113 0.92044 0.92042 0.92325 0.93056 0.95196 0.93950 0.92712 0.90900 0.91483 0.91387 0.92299 0.92119 0.92315 0.91793 0.92262 0.92142 0.92077 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 3 C 0.09 0.97 1.96 -67.71 -0.13 0.84 16 4 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 5 N -0.66 -9.32 4.98 -108.00 -0.54 -9.86 16 6 C 0.04 0.55 4.13 -4.98 -0.02 0.53 16 7 C 0.50 10.50 7.73 -10.99 -0.08 10.42 16 8 O -0.53 -13.47 15.92 5.56 0.09 -13.38 16 9 N -0.60 -12.70 2.46 -175.05 -0.43 -13.13 16 10 C 0.11 1.73 5.93 -4.04 -0.02 1.70 16 11 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 12 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 13 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 14 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.11 -1.05 1.98 -90.62 -0.18 -1.23 16 22 C -0.12 -1.17 4.66 -26.73 -0.12 -1.29 16 23 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 24 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 25 C -0.12 -1.06 5.92 -26.75 -0.16 -1.22 16 26 C -0.12 -1.21 4.17 -26.75 -0.11 -1.32 16 27 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 32 H 0.35 5.31 5.66 -39.29 -0.22 5.08 16 33 H 0.06 0.74 4.91 -51.93 -0.25 0.49 16 34 H 0.09 1.21 6.97 -51.93 -0.36 0.85 16 35 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 36 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 40 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.79 6.12 -51.93 -0.32 0.47 16 45 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 46 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 53 H 0.07 0.78 5.78 -51.93 -0.30 0.48 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -32.01 398.24 -10.07 -42.08 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -9.91 Total: 3.00 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.99 Total: -5.60 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.23 Total: -49.10 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.01 -10.07 -42.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611433727.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.875 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds