Wall clock time and date at job start Tue Mar 31 2020 09:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 H 1.09006 * 109.46933 * 304.37954 * 3 2 1 5 5 N 1.46901 * 109.47423 * 64.37851 * 3 2 1 6 6 C 1.46893 * 111.00142 * 218.82946 * 5 3 2 7 7 C 1.50700 * 109.47238 * 173.79811 * 6 5 3 8 8 O 1.21282 * 119.99720 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00436 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99729 * 0.02562 * 9 7 6 11 11 C 1.52997 * 109.47107 * 90.00037 * 10 9 7 12 12 C 1.46501 * 120.00488 * 179.97438 * 9 7 6 13 13 C 1.50706 * 109.46826 * 89.99938 * 12 9 7 14 14 H 1.07995 * 119.99998 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99661 * 180.02562 * 13 12 9 16 16 N 1.31517 * 120.00131 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99775 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47093 * 60.00298 * 17 15 13 19 19 H 1.48503 * 109.46822 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47196 * 299.99797 * 17 15 13 21 21 C 1.52997 * 109.47426 * 184.38659 * 3 2 1 22 22 C 1.53009 * 109.46531 * 297.50516 * 21 3 2 23 23 C 1.52998 * 109.46910 * 180.02562 * 22 21 3 24 24 C 1.52999 * 109.47548 * 59.99807 * 23 22 21 25 25 C 1.53002 * 109.46989 * 299.99836 * 24 23 22 26 26 C 1.52999 * 109.47418 * 177.50635 * 21 3 2 27 27 H 1.08997 * 109.46797 * 301.57941 * 1 2 3 28 28 H 1.08995 * 109.47253 * 61.58531 * 1 2 3 29 29 H 1.09008 * 109.47062 * 181.58415 * 1 2 3 30 30 H 1.08997 * 109.47194 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.47300 * 119.99856 * 2 1 3 32 32 H 1.00903 * 110.99797 * 94.87075 * 5 3 2 33 33 H 1.09003 * 109.47446 * 293.79325 * 6 5 3 34 34 H 1.08996 * 109.47418 * 53.79709 * 6 5 3 35 35 H 1.09009 * 109.47208 * 209.99968 * 10 9 7 36 36 H 1.09000 * 109.47230 * 329.99547 * 10 9 7 37 37 H 1.08997 * 109.47725 * 60.00374 * 11 10 9 38 38 H 1.09011 * 109.47172 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47343 * 299.99440 * 11 10 9 40 40 H 1.08999 * 109.47317 * 209.99805 * 12 9 7 41 41 H 1.09000 * 109.46945 * 330.00265 * 12 9 7 42 42 H 0.97006 * 119.99718 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47680 * 57.50040 * 21 3 2 44 44 H 1.09005 * 109.46938 * 299.99639 * 22 21 3 45 45 H 1.08991 * 109.47498 * 59.99980 * 22 21 3 46 46 H 1.09008 * 109.47358 * 299.99714 * 23 22 21 47 47 H 1.08998 * 109.47567 * 179.97438 * 23 22 21 48 48 H 1.09006 * 109.47175 * 180.02562 * 24 23 22 49 49 H 1.09000 * 109.47180 * 59.99643 * 24 23 22 50 50 H 1.08997 * 109.47476 * 299.99818 * 25 24 23 51 51 H 1.09004 * 109.47194 * 179.97438 * 25 24 23 52 52 H 1.08994 * 109.47254 * 299.99987 * 26 21 3 53 53 H 1.09001 * 109.47140 * 59.99886 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9785 -0.8482 5 7 1.6386 2.1038 1.2488 6 6 1.2448 3.4975 1.0034 7 6 0.6971 4.0959 2.2734 8 8 0.6401 3.4269 3.2835 9 7 0.2708 5.3743 2.2869 10 6 0.3392 6.1822 1.0667 11 6 -0.9622 6.0253 0.2776 12 6 -0.2622 5.9559 3.5215 13 6 0.8601 6.5867 4.3049 14 1 1.8692 6.5577 3.9213 15 6 0.5985 7.2008 5.5112 16 7 -0.6304 7.2356 5.9785 17 14 1.9895 7.9833 6.4820 18 1 2.6232 9.0502 5.6664 19 1 1.4494 8.5716 7.7340 20 1 3.0015 6.9497 6.8177 21 6 3.5660 1.4439 -0.1103 22 6 4.1662 0.7457 1.1117 23 6 5.6923 0.7477 1.0018 24 6 6.1973 2.1906 0.9395 25 6 5.5972 2.8887 -0.2825 26 6 4.0715 2.8866 -0.1729 27 1 -0.3633 0.5382 0.8755 28 1 -0.3633 0.4890 -0.9038 29 1 -0.3633 -1.0273 0.0284 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.3738 2.0517 1.9380 33 1 2.1142 4.0690 0.6781 34 1 0.4794 3.5277 0.2280 35 1 0.4791 7.2302 1.3321 36 1 1.1773 5.8472 0.4557 37 1 -1.8003 6.3604 0.8885 38 1 -0.9114 6.6268 -0.6301 39 1 -1.1021 4.9774 0.0121 40 1 -1.0044 6.7150 3.2747 41 1 -0.7281 5.1732 4.1202 42 1 -0.8143 7.6674 6.8275 43 1 3.8655 0.9144 -1.0148 44 1 3.8668 1.2753 2.0162 45 1 3.8062 -0.2820 1.1564 46 1 5.9921 0.2184 0.0973 47 1 6.1200 0.2508 1.8726 48 1 7.2845 2.1919 0.8607 49 1 5.8975 2.7199 1.8440 50 1 5.8969 2.3595 -1.1870 51 1 5.9566 3.9168 -0.3267 52 1 3.6439 3.3840 -1.0434 53 1 3.7721 3.4161 0.7316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611433727.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:14 Heat of formation + Delta-G solvation = -84.671287 kcal Electronic energy + Delta-G solvation = -27737.350047 eV Core-core repulsion = 24220.769071 eV Total energy + Delta-G solvation = -3516.580976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.03154 -40.08776 -37.08410 -36.70982 -34.93236 -33.56523 -31.71115 -31.59112 -31.46826 -29.48872 -27.56684 -25.86594 -24.59774 -23.98670 -23.61064 -22.75587 -21.27583 -20.28314 -19.81234 -18.60444 -17.75644 -17.35977 -17.08735 -16.45153 -16.21256 -15.94458 -15.47397 -15.12064 -15.04930 -14.87871 -14.64793 -14.44509 -14.19127 -13.97451 -13.84402 -13.62963 -13.50514 -13.30111 -13.19289 -13.06279 -12.92878 -12.67422 -12.64543 -12.48133 -12.19273 -12.14887 -12.02455 -11.91861 -11.81422 -11.77206 -11.72601 -11.54074 -11.34010 -10.92961 -10.81183 -10.64519 -10.46913 -9.39652 -9.15575 -8.21972 -6.37164 1.34737 1.39333 1.46571 1.91584 2.28173 2.43438 3.06986 3.33300 3.67754 3.75763 3.79665 3.89412 4.09832 4.16228 4.24962 4.30793 4.36888 4.37964 4.45612 4.49717 4.52990 4.61722 4.65540 4.66548 4.67454 4.75097 4.77703 4.89311 4.94243 4.99618 5.05043 5.06206 5.09001 5.17150 5.21280 5.23340 5.24165 5.28645 5.31978 5.37917 5.39727 5.41563 5.50411 5.58470 5.59138 5.63119 5.88140 6.07453 6.16533 6.45586 6.71173 6.87378 7.29384 7.57443 8.84787 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004037 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.518138 B = 6933.545117 C = 8009.626428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.093 3.907 4 H 0.084 0.916 5 N -0.679 5.679 6 C 0.057 3.943 7 C 0.493 3.507 8 O -0.587 6.587 9 N -0.606 5.606 10 C 0.101 3.899 11 C -0.160 4.160 12 C 0.264 3.736 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.113 4.113 26 C -0.122 4.122 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.341 0.659 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.019 0.981 41 H -0.008 1.008 42 H 0.267 0.733 43 H 0.094 0.906 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.059 0.941 52 H 0.074 0.926 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -10.585 -20.639 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.016 4.016 4 H 0.102 0.898 5 N -0.313 5.313 6 C -0.075 4.075 7 C 0.282 3.718 8 O -0.467 6.467 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.218 4.218 12 C 0.143 3.857 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.162 4.162 25 C -0.151 4.151 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.011 0.989 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.094 0.906 51 H 0.078 0.922 52 H 0.093 0.907 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.767 -11.077 -19.990 24.853 hybrid contribution 0.952 1.063 1.310 1.937 sum 10.719 -10.014 -18.680 23.751 Atomic orbital electron populations 1.21629 0.96345 1.00817 1.01273 1.21510 0.95708 0.95220 1.01862 1.21774 0.93182 0.95721 0.90967 0.89752 1.60236 1.46229 1.13567 1.11290 1.21969 1.01220 0.90471 0.93844 1.21394 0.78010 0.81388 0.91052 1.90631 1.56959 1.61590 1.37524 1.48284 1.61736 1.11724 1.12056 1.21717 0.99463 0.96195 0.84787 1.22150 0.96667 1.02591 1.00430 1.18642 0.93535 0.91733 0.81833 1.21668 0.94669 1.35930 1.05712 0.92982 1.25862 0.98351 0.96697 0.98230 1.70056 1.20996 1.44863 1.20964 0.85488 0.78780 0.78634 0.78021 1.18356 1.20287 1.20439 1.21735 0.94794 0.96174 0.99451 1.21618 0.95803 1.00730 0.97382 1.21491 0.94975 0.96447 1.02179 1.21571 1.00343 0.96225 0.98057 1.21475 0.94737 1.00484 0.98393 1.21733 0.96448 0.96473 1.01283 0.94278 0.92709 0.93032 0.90064 0.92718 0.83722 0.90552 0.86739 0.91130 0.88388 0.94452 0.88539 0.92207 0.96271 0.98946 0.92436 0.88808 0.94155 0.91069 0.90664 0.92365 0.91351 0.94054 0.90621 0.92233 0.90724 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.81 71.98 0.71 -2.29 16 2 C -0.10 -1.92 5.20 30.59 0.16 -1.76 16 3 C 0.09 1.77 1.96 44.91 0.09 1.85 16 4 H 0.08 1.42 7.53 -2.38 -0.02 1.40 16 5 N -0.68 -18.84 4.98 -495.59 -2.47 -21.30 16 6 C 0.06 1.63 4.13 85.56 0.35 1.98 16 7 C 0.49 21.12 7.73 87.66 0.68 21.80 16 8 O -0.59 -31.77 15.92 -3.04 -0.05 -31.82 16 9 N -0.61 -26.28 2.46 -826.14 -2.03 -28.31 16 10 C 0.10 3.11 5.93 86.38 0.51 3.62 16 11 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 12 C 0.26 14.73 5.16 85.63 0.44 15.17 16 13 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 17 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 21 C -0.10 -1.65 1.98 -10.79 -0.02 -1.67 16 22 C -0.12 -2.19 4.66 30.60 0.14 -2.05 16 23 C -0.11 -1.85 5.92 30.59 0.18 -1.66 16 24 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 25 C -0.11 -1.77 5.92 30.58 0.18 -1.59 16 26 C -0.12 -2.10 4.17 30.58 0.13 -1.97 16 27 H 0.04 1.07 7.69 -2.39 -0.02 1.06 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.13 6.72 -2.38 -0.02 1.11 16 32 H 0.34 10.64 5.66 -89.69 -0.51 10.13 16 33 H 0.08 1.89 4.91 -2.39 -0.01 1.88 16 34 H 0.11 2.74 6.97 -2.39 -0.02 2.72 16 35 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 36 H 0.10 2.31 6.44 -2.39 -0.02 2.30 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 1.40 7.22 -2.39 -0.02 1.39 16 40 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 41 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 42 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 0.98 6.12 -2.38 -0.01 0.96 16 45 H 0.07 1.27 6.59 -2.39 -0.02 1.25 16 46 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.04 0.92 5.78 -2.39 -0.01 0.90 16 Total: -1.00 -74.57 398.24 3.29 -71.28 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.35 Total: 24.28 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.17 Total: -4.65 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.21 Total: -106.84 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.57 3.29 -71.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611433727.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.390 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds