Wall clock time and date at job start Tue Mar 31 2020 10:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 O 1.42897 * 109.47091 * 120.00258 * 2 1 3 5 5 C 1.42906 * 113.99962 * 89.99853 * 4 2 1 6 6 H 1.09002 * 112.84931 * 338.30767 * 5 4 2 7 7 C 1.53780 * 113.61217 * 109.50542 * 5 4 2 8 8 C 1.53787 * 87.07919 * 140.06222 * 7 5 4 9 9 H 1.09003 * 113.61167 * 89.20077 * 8 7 5 10 10 N 1.46893 * 113.61370 * 220.01343 * 8 7 5 11 11 C 1.46895 * 111.00566 * 255.49522 * 10 8 7 12 12 C 1.53038 * 109.46417 * 205.00531 * 11 10 8 13 13 C 1.53192 * 109.34054 * 178.63146 * 12 11 10 14 14 N 1.46935 * 108.77544 * 54.61647 * 13 12 11 15 15 C 1.36937 * 120.62533 * 126.37007 * 14 13 12 16 16 H 1.08009 * 119.99440 * 207.67575 * 15 14 13 17 17 C 1.38803 * 120.00530 * 27.68794 * 15 14 13 18 18 N 1.31619 * 120.00080 * 17.36290 * 17 15 14 19 19 Si 1.86797 * 120.00079 * 197.36919 * 17 15 14 20 20 H 1.48501 * 109.47213 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47373 * 119.99468 * 19 17 15 22 22 H 1.48498 * 109.47465 * 239.99698 * 19 17 15 23 23 C 1.46925 * 118.73829 * 306.39519 * 14 13 12 24 24 C 1.53036 * 109.48387 * 84.91473 * 11 10 8 25 25 C 1.53774 * 87.08090 * 334.56681 * 8 7 5 26 26 C 1.53001 * 113.61454 * 139.98015 * 25 8 7 27 27 C 1.53000 * 113.61749 * 270.88067 * 25 8 7 28 28 H 1.08996 * 109.47309 * 300.00163 * 1 2 3 29 29 H 1.09008 * 109.47077 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46818 * 240.00287 * 2 1 3 32 32 H 1.09001 * 109.47141 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47274 * 299.99964 * 3 2 1 34 34 H 1.08994 * 109.46857 * 60.00190 * 3 2 1 35 35 H 1.09000 * 113.61666 * 25.51392 * 7 5 4 36 36 H 1.08994 * 113.61455 * 254.61112 * 7 5 4 37 37 H 1.00901 * 111.00529 * 19.45490 * 10 8 7 38 38 H 1.09004 * 109.44760 * 324.97073 * 11 10 8 39 39 H 1.08994 * 109.49868 * 58.65935 * 12 11 10 40 40 H 1.09006 * 109.49420 * 298.59542 * 12 11 10 41 41 H 1.08999 * 109.59130 * 174.39991 * 13 12 11 42 42 H 1.08995 * 109.58772 * 294.68779 * 13 12 11 43 43 H 0.97006 * 120.00073 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.58688 * 173.39929 * 23 14 13 45 45 H 1.09013 * 109.58356 * 293.67790 * 23 14 13 46 46 H 1.09000 * 109.47185 * 61.41001 * 24 11 10 47 47 H 1.09003 * 109.52779 * 301.34039 * 24 11 10 48 48 H 1.08993 * 109.47035 * 60.00033 * 26 25 8 49 49 H 1.09002 * 109.47190 * 180.02562 * 26 25 8 50 50 H 1.09004 * 109.46909 * 299.99990 * 26 25 8 51 51 H 1.09000 * 109.46636 * 59.99872 * 27 25 8 52 52 H 1.08994 * 109.47281 * 180.02562 * 27 25 8 53 53 H 1.09002 * 109.46799 * 300.00822 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9885 6 1 1.6231 -2.4830 0.1569 7 6 3.6790 -2.4993 0.9749 8 6 3.2554 -3.7279 1.7971 9 1 2.9685 -4.5841 1.1865 10 7 4.2045 -4.0791 2.8618 11 6 4.9983 -5.2584 2.4917 12 6 5.4880 -5.9619 3.7595 13 6 6.2865 -7.2101 3.3709 14 7 7.3588 -6.8167 2.4465 15 6 8.6610 -7.1519 2.7055 16 1 9.4628 -6.5345 2.3280 17 6 8.9506 -8.2850 3.4531 18 7 8.0332 -9.2133 3.6233 19 14 10.6422 -8.4923 4.2177 20 1 11.4855 -7.3175 3.8800 21 1 10.5091 -8.5989 5.6929 22 1 11.2773 -9.7256 3.6877 23 6 7.0073 -6.0566 1.2393 24 6 6.2006 -4.8214 1.6518 25 6 2.0622 -2.8907 2.2869 26 6 0.7555 -3.6813 2.3794 27 6 2.3591 -2.0812 3.5508 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 4.3326 -1.8156 1.5166 36 1 4.0534 -2.7466 -0.0184 37 1 4.8016 -3.2973 3.0864 38 1 4.3807 -5.9441 1.9115 39 1 4.6318 -6.2526 4.3681 40 1 6.1254 -5.2847 4.3281 41 1 6.7207 -7.6590 4.2642 42 1 5.6272 -7.9288 2.8843 43 1 8.2355 -10.0050 4.1461 44 1 7.9168 -5.7445 0.7262 45 1 6.4092 -6.6812 0.5754 46 1 6.8315 -4.1547 2.2398 47 1 5.8520 -4.3000 0.7602 48 1 0.8804 -4.5090 3.0773 49 1 -0.0415 -3.0261 2.7310 50 1 0.4967 -4.0717 1.3951 51 1 3.1815 -1.3928 3.3565 52 1 1.4720 -1.5164 3.8373 53 1 2.6353 -2.7581 4.3593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613242446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:30 Heat of formation + Delta-G solvation = -19.556359 kcal Electronic energy + Delta-G solvation = -27313.107749 eV Core-core repulsion = 23799.350368 eV Total energy + Delta-G solvation = -3513.757380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.46280 -38.02461 -37.09393 -34.22202 -32.49740 -31.65343 -30.47166 -29.76631 -28.71707 -27.54874 -27.32096 -24.85606 -23.31398 -22.56019 -22.00625 -21.47720 -21.20711 -19.44571 -18.30524 -17.08465 -16.73146 -15.47878 -15.36203 -15.12081 -14.70974 -14.48219 -14.23681 -13.88044 -13.61967 -13.47800 -13.33275 -13.06224 -12.91716 -12.70602 -12.55272 -12.48226 -12.32503 -12.14359 -12.06462 -11.94897 -11.69269 -11.61003 -11.31953 -11.08844 -11.04180 -10.81214 -10.70402 -10.64625 -10.57996 -10.41711 -10.16836 -10.11835 -9.89440 -9.62712 -9.44031 -9.31545 -8.45481 -7.94780 -6.63921 -5.75672 -3.17373 3.38977 3.46844 3.48898 3.49088 4.38250 4.40968 4.52051 4.54414 4.63949 4.75015 4.78052 4.92121 4.94981 5.19140 5.26863 5.28806 5.37058 5.45195 5.46217 5.47025 5.50266 5.55101 5.58822 5.65063 5.75049 5.76319 5.82049 5.87100 5.90553 5.93171 5.95640 6.03136 6.04926 6.14776 6.20111 6.33663 6.37753 6.51817 6.55375 6.66305 6.70020 6.75306 6.90070 6.98532 7.20238 7.42134 7.46338 7.70857 7.74715 7.83299 8.48757 9.25075 9.88803 10.45488 11.32814 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.002658 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.113505 B =10531.996470 C =10932.358017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.361 6.361 5 C 0.070 3.930 6 H 0.081 0.919 7 C -0.185 4.185 8 C 0.081 3.919 9 H 0.095 0.905 10 N -0.669 5.669 11 C 0.096 3.904 12 C -0.125 4.125 13 C 0.170 3.830 14 N -0.592 5.592 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.149 3.851 24 C -0.158 4.158 25 C -0.068 4.068 26 C -0.134 4.134 27 C -0.109 4.109 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.340 0.660 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.015 0.985 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.049 0.951 51 H 0.053 0.947 52 H 0.048 0.952 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 17.369 -6.295 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.280 6.280 5 C 0.011 3.989 6 H 0.099 0.901 7 C -0.224 4.224 8 C -0.030 4.030 9 H 0.113 0.887 10 N -0.297 5.297 11 C -0.013 4.013 12 C -0.165 4.165 13 C 0.044 3.956 14 N -0.315 5.315 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.218 1.218 23 C 0.022 3.978 24 C -0.199 4.199 25 C -0.069 4.069 26 C -0.192 4.192 27 C -0.166 4.166 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.072 0.928 52 H 0.067 0.933 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.209 16.935 -5.656 24.115 hybrid contribution 1.363 0.091 -0.682 1.527 sum -14.846 17.026 -6.338 23.462 Atomic orbital electron populations 1.22313 0.96241 1.02261 1.02317 1.22085 0.93420 0.93829 0.88596 1.21847 1.01813 0.94687 1.02270 1.87996 1.85735 1.19610 1.34671 1.23775 0.95786 0.81159 0.98172 0.90081 1.24243 0.97386 0.99383 1.01417 1.22841 0.93674 0.94916 0.91608 0.88714 1.60552 1.21172 1.08565 1.39380 1.21588 0.92203 0.90951 0.96535 1.22170 0.99061 0.99464 0.95769 1.20799 0.88436 0.91009 0.95339 1.44081 1.04115 1.63473 1.19862 1.19217 0.83237 1.04531 1.31003 0.91794 1.25024 0.97461 0.94927 1.02337 1.70049 1.33684 1.08386 1.42606 0.86247 0.84071 0.77504 0.79099 1.20320 1.21538 1.21790 1.20811 0.96375 0.90921 0.89680 1.22708 0.98356 0.99905 0.98886 1.22259 0.95249 0.94606 0.94824 1.21716 0.95996 0.99951 1.01501 1.21234 1.00914 0.98692 0.95802 0.91854 0.91993 0.92547 0.92523 0.92040 0.91560 0.91872 0.89208 0.91670 0.84081 0.91486 0.92787 0.92932 0.89407 0.96626 0.93723 0.93126 0.96749 0.92394 0.93617 0.91746 0.92856 0.93180 0.92755 0.93292 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.53 37.16 0.35 -0.93 16 2 C 0.08 0.67 3.22 -26.73 -0.09 0.58 16 3 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 4 O -0.36 -3.90 9.10 -35.23 -0.32 -4.22 16 5 C 0.07 0.72 3.51 -25.92 -0.09 0.63 16 6 H 0.08 0.77 7.64 -51.93 -0.40 0.37 16 7 C -0.18 -2.05 6.88 -25.92 -0.18 -2.22 16 8 C 0.08 0.97 3.41 -66.90 -0.23 0.74 16 9 H 0.09 1.18 7.47 -51.93 -0.39 0.79 16 10 N -0.67 -9.30 5.32 -98.85 -0.53 -9.83 16 11 C 0.10 1.61 2.43 -67.68 -0.16 1.44 16 12 C -0.12 -2.43 5.69 -26.61 -0.15 -2.58 16 13 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 14 N -0.59 -14.98 3.00 -172.31 -0.52 -15.50 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 16 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 19 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 24 C -0.16 -2.72 5.33 -26.61 -0.14 -2.86 16 25 C -0.07 -0.75 1.35 -153.70 -0.21 -0.95 16 26 C -0.13 -1.36 9.20 37.16 0.34 -1.02 16 27 C -0.11 -1.25 7.76 37.16 0.29 -0.96 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 7.76 -51.93 -0.40 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.06 7.34 -51.93 -0.38 0.68 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.34 4.69 7.80 -39.29 -0.31 4.38 16 38 H 0.07 1.17 7.47 -51.93 -0.39 0.78 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.70 7.74 -51.93 -0.40 0.29 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.46 7.94 -51.93 -0.41 0.05 16 51 H 0.05 0.64 7.19 -51.93 -0.37 0.27 16 52 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 53 H 0.07 0.83 7.77 -51.93 -0.40 0.42 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -28.94 402.10 -10.36 -39.30 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -10.47 Total: 1.96 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.18 Total: -8.82 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.42 Total: -51.16 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.32 Total: -4.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.94 -10.36 -39.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613242446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.746 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds